RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NHSL1Q5SYE7 1610 aa20.74■□□□□ 0.91
USP28-209ENST00000540925 DLC1Q96QB1 1528 aa20.73■□□□□ 0.91
USP28-209ENST00000540925 WAPLQ7Z5K2 1190 aa20.73■□□□□ 0.91
USP28-209ENST00000540925 TRIM26Q12899 539 aaPredicted RBP20.72■□□□□ 0.91
USP28-209ENST00000540925 KDM2AQ9Y2K7 1162 aa20.7■□□□□ 0.9
USP28-209ENST00000540925 JCADQ9P266 1359 aa20.69■□□□□ 0.9
USP28-209ENST00000540925 SHPRHQ149N8 1683 aa20.66■□□□□ 0.9
USP28-209ENST00000540925 KIAA1210Q9ULL0 1709 aa20.66■□□□□ 0.9
USP28-209ENST00000540925 FMN2Q9NZ56 1722 aa20.65■□□□□ 0.9
USP28-209ENST00000540925 ORAI2Q96SN7 254 aa20.64■□□□□ 0.89
USP28-209ENST00000540925 RGS17Q9UGC6 210 aaPredicted RBP20.64■□□□□ 0.89
USP28-209ENST00000540925 PRAM1Q96QH2 718 aa20.63■□□□□ 0.89
USP28-209ENST00000540925 ADGRB2O60241 1585 aa20.63■□□□□ 0.89
USP28-209ENST00000540925 SIN3AQ96ST3 1273 aa20.62■□□□□ 0.89
USP28-209ENST00000540925 DDX17Q92841 729 aaKnown RBP20.61■□□□□ 0.89
USP28-209ENST00000540925 SOS2Q07890 1332 aaPredicted RBP20.6■□□□□ 0.89
USP28-209ENST00000540925 L3MBTL2Q969R5 705 aa20.6■□□□□ 0.89
USP28-209ENST00000540925 ARHGEF28Q8N1W1 1705 aaKnown RBP20.6■□□□□ 0.89
USP28-209ENST00000540925 LRP6O75581 1613 aa20.6■□□□□ 0.89
USP28-209ENST00000540925 SPATA31A6Q5VVP1 1343 aa20.59■□□□□ 0.89
USP28-209ENST00000540925 TRAK1Q9UPV9 953 aa20.59■□□□□ 0.89
USP28-209ENST00000540925 LRRC59Q96AG4 307 aaKnown RBP20.57■□□□□ 0.88
USP28-209ENST00000540925 PXDNQ92626 1479 aa20.56■□□□□ 0.88
USP28-209ENST00000540925 PNPLA6Q8IY17 1366 aa20.56■□□□□ 0.88
USP28-209ENST00000540925 USP32Q8NFA0 1604 aa20.56■□□□□ 0.88
USP28-209ENST00000540925 NBPF1Q3BBV0 1214 aa20.55■□□□□ 0.88
USP28-209ENST00000540925 SAFB2Q14151 953 aaKnown RBP eCLIP20.54■□□□□ 0.88
USP28-209ENST00000540925 ESCO1Q5FWF5 840 aa20.54■□□□□ 0.88
USP28-209ENST00000540925 POGKQ9P215 609 aa20.54■□□□□ 0.88
USP28-209ENST00000540925 KIF1AQ12756 1690 aa20.54■□□□□ 0.88
USP28-209ENST00000540925 ANKARQ7Z5J8 1434 aa20.53■□□□□ 0.88
USP28-209ENST00000540925 NPHP3Q7Z494 1330 aa20.53■□□□□ 0.88
USP28-209ENST00000540925 RGPD8O14715 1765 aaPredicted RBP20.52■□□□□ 0.88
USP28-209ENST00000540925 NUTM2FA1L443 756 aa20.52■□□□□ 0.88
USP28-209ENST00000540925 NEUROD1Q13562 356 aa20.51■□□□□ 0.87
USP28-209ENST00000540925 TRPM1Q7Z4N2 1603 aa20.51■□□□□ 0.87
USP28-209ENST00000540925 COL22A1Q8NFW1 1626 aaPredicted RBP20.5■□□□□ 0.87
USP28-209ENST00000540925 TULP4Q9NRJ4 1543 aa20.49■□□□□ 0.87
USP28-209ENST00000540925 FOXO3O43524 673 aa20.49■□□□□ 0.87
USP28-209ENST00000540925 MINK1Q8N4C8 1332 aaPredicted RBP20.49■□□□□ 0.87
USP28-209ENST00000540925 HIRIP3Q9BW71 556 aaPredicted RBP20.48■□□□□ 0.87
USP28-209ENST00000540925 PRR36Q9H6K5 1346 aa20.48■□□□□ 0.87
USP28-209ENST00000540925 WASLO00401 505 aaPredicted RBP20.47■□□□□ 0.87
USP28-209ENST00000540925 POTEAQ6S8J7 498 aa20.47■□□□□ 0.87
USP28-209ENST00000540925 PHF8Q9UPP1 1060 aa20.46■□□□□ 0.87
USP28-209ENST00000540925 EIF3AQ14152 1382 aaKnown RBP20.46■□□□□ 0.87
USP28-209ENST00000540925 ATP7BP35670 1465 aa20.44■□□□□ 0.86
USP28-209ENST00000540925 NBPF8Q3BBV2 869 aa20.44■□□□□ 0.86
USP28-209ENST00000540925 GPRASP1Q5JY77 1395 aa20.44■□□□□ 0.86
USP28-209ENST00000540925 XPCQ01831 940 aaPredicted RBP20.43■□□□□ 0.86
USP28-209ENST00000540925 NUTM2BA6NNL0 878 aaPredicted RBP20.42■□□□□ 0.86
USP28-209ENST00000540925 NUTM2EB1AL46 878 aaPredicted RBP20.42■□□□□ 0.86
USP28-209ENST00000540925 NUTM2AQ8IVF1 878 aaPredicted RBP20.42■□□□□ 0.86
USP28-209ENST00000540925 SPATA31A3Q5VYP0 1347 aa20.42■□□□□ 0.86
USP28-209ENST00000540925 SBNO1A3KN83 1393 aa20.4■□□□□ 0.86
USP28-209ENST00000540925 KRT28Q7Z3Y7 464 aa20.4■□□□□ 0.86
USP28-209ENST00000540925 TRPM3Q9HCF6 1732 aaPredicted RBP20.39■□□□□ 0.86
USP28-209ENST00000540925 TOPAZ1Q8N9V7 1692 aa20.39■□□□□ 0.86
USP28-209ENST00000540925 CENPJQ9HC77 1338 aaPredicted RBP20.39■□□□□ 0.85
USP28-209ENST00000540925 QRICH2Q9H0J4 1663 aa20.38■□□□□ 0.85
USP28-209ENST00000540925 TNS3Q68CZ2 1445 aa20.38■□□□□ 0.85
USP28-209ENST00000540925 ROCK2O75116 1388 aaKnown RBP20.38■□□□□ 0.85
USP28-209ENST00000540925 MEX3CQ5U5Q3 659 aaKnown RBP20.38■□□□□ 0.85
USP28-209ENST00000540925 ITSN1Q15811 1721 aa20.38■□□□□ 0.85
USP28-209ENST00000540925 RALGAPBQ86X10 1494 aa20.37■□□□□ 0.85
USP28-209ENST00000540925 TONSLQ96HA7 1378 aa20.37■□□□□ 0.85
USP28-209ENST00000540925 PMFBP1Q8TBY8 1022 aa20.37■□□□□ 0.85
USP28-209ENST00000540925 NUDT16Q96DE0 195 aaKnown RBP20.37■□□□□ 0.85
USP28-209ENST00000540925 CDK19Q9BWU1 502 aa20.37■□□□□ 0.85
USP28-209ENST00000540925 PSME1Q06323 249 aa20.35■□□□□ 0.85
USP28-209ENST00000540925 ZNF772Q68DY9 489 aaPredicted RBP20.35■□□□□ 0.85
USP28-209ENST00000540925 AFF2P51816 1311 aa20.34■□□□□ 0.85
USP28-209ENST00000540925 ALS2Q96Q42 1657 aa20.34■□□□□ 0.85
USP28-209ENST00000540925 POLR3AO14802 1390 aaPredicted RBP20.34■□□□□ 0.85
USP28-209ENST00000540925 MARF1Q9Y4F3 1742 aaKnown RBP20.33■□□□□ 0.84
USP28-209ENST00000540925 ADAMTS2O95450 1211 aa20.32■□□□□ 0.84
USP28-209ENST00000540925 C8orf37Q96NL8 207 aa20.32■□□□□ 0.84
USP28-209ENST00000540925 ARHGEF10O15013 1369 aa20.32■□□□□ 0.84
USP28-209ENST00000540925 ABCA3Q99758 1704 aa20.31■□□□□ 0.84
USP28-209ENST00000540925 PLEKHG3A1L390 1219 aa20.31■□□□□ 0.84
USP28-209ENST00000540925 FNBP4Q8N3X1 1017 aaPredicted RBP20.31■□□□□ 0.84
USP28-209ENST00000540925 PCGF6Q9BYE7 350 aa20.31■□□□□ 0.84
USP28-209ENST00000540925 CCDC61Q9Y6R9 512 aa20.31■□□□□ 0.84
USP28-209ENST00000540925 CLSPNQ9HAW4 1339 aa20.29■□□□□ 0.84
USP28-209ENST00000540925 SBNO2Q9Y2G9 1366 aa20.29■□□□□ 0.84
USP28-209ENST00000540925 BCL9LQ86UU0 1499 aa20.27■□□□□ 0.84
USP28-209ENST00000540925 NGDNQ8NEJ9 315 aaKnown RBP20.27■□□□□ 0.84
USP28-209ENST00000540925 NGLY1Q96IV0 654 aa20.27■□□□□ 0.84
USP28-209ENST00000540925 CRYBG1Q9Y4K1 1723 aa20.27■□□□□ 0.83
USP28-209ENST00000540925 CDK12Q9NYV4 1490 aaPredicted RBP20.26■□□□□ 0.83
USP28-209ENST00000540925 CABP2Q9NPB3 220 aa20.26■□□□□ 0.83
USP28-209ENST00000540925 ACEP12821 1306 aa20.26■□□□□ 0.83
USP28-209ENST00000540925 CARD11Q9BXL7 1154 aa20.25■□□□□ 0.83
USP28-209ENST00000540925 SLIT2O94813 1529 aa20.25■□□□□ 0.83
USP28-209ENST00000540925 PPIP5K1Q6PFW1 1433 aa20.25■□□□□ 0.83
USP28-209ENST00000540925 SRPK2P78362 688 aaKnown RBP20.24■□□□□ 0.83
USP28-209ENST00000540925 EVC2Q86UK5 1308 aa20.24■□□□□ 0.83
USP28-209ENST00000540925 ATRNO75882 1429 aa20.23■□□□□ 0.83
USP28-209ENST00000540925 CABLES1Q8TDN4 633 aa20.23■□□□□ 0.83
USP28-209ENST00000540925 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms