RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 FRMPD1Q5SYB0 1578 aa22.06■■□□□ 1.12
USP28-208ENST00000540438 KIF1BO60333 1816 aa22.05■■□□□ 1.12
USP28-208ENST00000540438 STAC3Q96MF2 364 aa22.05■■□□□ 1.12
USP28-208ENST00000540438 TSR2Q969E8 191 aaKnown RBP22.05■■□□□ 1.12
USP28-208ENST00000540438 MYOM1P52179 1685 aa22.04■■□□□ 1.12
USP28-208ENST00000540438 NCKAP5LQ9HCH0 1330 aa22.03■■□□□ 1.12
USP28-208ENST00000540438 BACH2Q9BYV9 841 aa22.02■■□□□ 1.12
USP28-208ENST00000540438 SYNMO15061 1565 aa22.02■■□□□ 1.12
USP28-208ENST00000540438 TCERG1O14776 1098 aaKnown RBP22.01■■□□□ 1.11
USP28-208ENST00000540438 KDM5AP29375 1690 aaKnown RBP22.01■■□□□ 1.11
USP28-208ENST00000540438 EVC2Q86UK5 1308 aa22.01■■□□□ 1.11
USP28-208ENST00000540438 IGHDP01880 384 aa22.01■■□□□ 1.11
USP28-208ENST00000540438 PIK3C2GO75747 1445 aa22■■□□□ 1.11
USP28-208ENST00000540438 CABP1Q9NZU7 370 aa22■■□□□ 1.11
USP28-208ENST00000540438 CGNL1Q0VF96 1302 aa21.99■■□□□ 1.11
USP28-208ENST00000540438 E9PSI1 815 aa21.98■■□□□ 1.11
USP28-208ENST00000540438 ABCC3O15438 1527 aa21.97■■□□□ 1.11
USP28-208ENST00000540438 MYOM2P54296 1465 aa21.97■■□□□ 1.11
USP28-208ENST00000540438 RLBP1P12271 317 aa21.96■■□□□ 1.11
USP28-208ENST00000540438 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.96■■□□□ 1.11
USP28-208ENST00000540438 ZRANB1Q9UGI0 708 aa21.96■■□□□ 1.11
USP28-208ENST00000540438 SOX12O15370 315 aa21.95■■□□□ 1.1
USP28-208ENST00000540438 RUNDC1Q96C34 613 aa21.94■■□□□ 1.1
USP28-208ENST00000540438 CDK19Q9BWU1 502 aa21.94■■□□□ 1.1
USP28-208ENST00000540438 MLH3Q9UHC1 1453 aa21.94■■□□□ 1.1
USP28-208ENST00000540438 ADGRB3O60242 1522 aa21.94■■□□□ 1.1
USP28-208ENST00000540438 SIGLEC1Q9BZZ2 1709 aa21.94■■□□□ 1.1
USP28-208ENST00000540438 CFAP53Q96M91 514 aa21.93■■□□□ 1.1
USP28-208ENST00000540438 HECW2Q9P2P5 1572 aa21.93■■□□□ 1.1
USP28-208ENST00000540438 A0A1W2PP64 1363 aa21.92■■□□□ 1.1
USP28-208ENST00000540438 HMOX1P09601 288 aa21.92■■□□□ 1.1
USP28-208ENST00000540438 TRMT2AQ8IZ69 625 aaKnown RBP21.92■■□□□ 1.1
USP28-208ENST00000540438 TSPOAP1O95153 1857 aa21.92■■□□□ 1.1
USP28-208ENST00000540438 TXNDC2Q86VQ3 553 aa21.91■■□□□ 1.1
USP28-208ENST00000540438 THUMPD2Q9BTF0 503 aaKnown RBP21.91■■□□□ 1.1
USP28-208ENST00000540438 FYB1O15117 783 aa21.9■■□□□ 1.1
USP28-208ENST00000540438 KDM2BQ8NHM5 1336 aa21.9■■□□□ 1.1
USP28-208ENST00000540438 NKTRP30414 1462 aaKnown RBP21.9■■□□□ 1.1
USP28-208ENST00000540438 ELL2O00472 640 aaPredicted RBP21.89■■□□□ 1.1
USP28-208ENST00000540438 ADGRB1O14514 1584 aa21.89■■□□□ 1.09
USP28-208ENST00000540438 DEKP35659 375 aaKnown RBP21.88■■□□□ 1.09
USP28-208ENST00000540438 RPGRIP1LQ68CZ1 1315 aa21.87■■□□□ 1.09
USP28-208ENST00000540438 NPC1L1Q9UHC9 1359 aa21.87■■□□□ 1.09
USP28-208ENST00000540438 RARSP54136 660 aaKnown RBP21.87■■□□□ 1.09
USP28-208ENST00000540438 CENPQQ7L2Z9 268 aaPredicted RBP21.87■■□□□ 1.09
USP28-208ENST00000540438 QRICH2Q9H0J4 1663 aa21.86■■□□□ 1.09
USP28-208ENST00000540438 NRXN1Q9ULB1 1477 aa21.86■■□□□ 1.09
USP28-208ENST00000540438 SLC52A1Q9NWF4 448 aa21.86■■□□□ 1.09
USP28-208ENST00000540438 POLR3AO14802 1390 aaPredicted RBP21.86■■□□□ 1.09
USP28-208ENST00000540438 EXOSC9Q06265 439 aaKnown RBP21.85■■□□□ 1.09
USP28-208ENST00000540438 SLC24A1O60721 1099 aa21.85■■□□□ 1.09
USP28-208ENST00000540438 PCDHB15Q9Y5E8 787 aa21.84■■□□□ 1.09
USP28-208ENST00000540438 TULP4Q9NRJ4 1543 aa21.84■■□□□ 1.09
USP28-208ENST00000540438 DIP2CQ9Y2E4 1556 aa21.83■■□□□ 1.09
USP28-208ENST00000540438 SEC24BO95487 1268 aa21.83■■□□□ 1.08
USP28-208ENST00000540438 ESF1Q9H501 851 aaKnown RBP21.82■■□□□ 1.08
USP28-208ENST00000540438 GLI2P10070 1586 aa21.82■■□□□ 1.08
USP28-208ENST00000540438 CEBPAP49715 358 aaPredicted RBP21.82■■□□□ 1.08
USP28-208ENST00000540438 LMTK2Q8IWU2 1503 aa21.82■■□□□ 1.08
USP28-208ENST00000540438 PPLO60437 1756 aa21.82■■□□□ 1.08
USP28-208ENST00000540438 RIPK4P57078 832 aa21.82■■□□□ 1.08
USP28-208ENST00000540438 EMILIN1Q9Y6C2 1016 aa21.82■■□□□ 1.08
USP28-208ENST00000540438 IFT172Q9UG01 1749 aa21.81■■□□□ 1.08
USP28-208ENST00000540438 INSRP06213 1382 aa21.81■■□□□ 1.08
USP28-208ENST00000540438 PLEKHG5O94827 1062 aa21.81■■□□□ 1.08
USP28-208ENST00000540438 RRS1Q15050 365 aaKnown RBP21.81■■□□□ 1.08
USP28-208ENST00000540438 ANKRD36BQ8N2N9 1353 aa21.81■■□□□ 1.08
USP28-208ENST00000540438 C8orf34Q49A92 452 aa21.81■■□□□ 1.08
USP28-208ENST00000540438 NME9Q86XW9 330 aa21.81■■□□□ 1.08
USP28-208ENST00000540438 MAPK8IP3Q9UPT6 1336 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 CAMSAP1Q5T5Y3 1602 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 MYO5BQ9ULV0 1848 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 SBNO2Q9Y2G9 1366 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 NEFMP07197 916 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 TERF2IPQ9NYB0 399 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 MS4A1P11836 297 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 RTL5Q5HYW3 569 aaPredicted RBP21.8■■□□□ 1.08
USP28-208ENST00000540438 SMC4Q9NTJ3 1288 aa21.8■■□□□ 1.08
USP28-208ENST00000540438 NEXMIFQ5QGS0 1516 aa21.78■■□□□ 1.08
USP28-208ENST00000540438 TMPOP42166 694 aaKnown RBP21.78■■□□□ 1.08
USP28-208ENST00000540438 KIAA1210Q9ULL0 1709 aa21.78■■□□□ 1.08
USP28-208ENST00000540438 HDGFL2Q7Z4V5 671 aaPredicted RBP21.78■■□□□ 1.08
USP28-208ENST00000540438 FTSJ3Q8IY81 847 aaKnown RBP21.77■■□□□ 1.08
USP28-208ENST00000540438 YTHDC2Q9H6S0 1430 aaKnown RBP21.76■■□□□ 1.07
USP28-208ENST00000540438 PHACTR3Q96KR7 559 aa21.76■■□□□ 1.07
USP28-208ENST00000540438 PRKAR2BP31323 418 aa21.76■■□□□ 1.07
USP28-208ENST00000540438 TRIM35Q9UPQ4 493 aa21.76■■□□□ 1.07
USP28-208ENST00000540438 FAM161AQ3B820 660 aa21.75■■□□□ 1.07
USP28-208ENST00000540438 NEO1Q92859 1461 aa21.75■■□□□ 1.07
USP28-208ENST00000540438 PIK3C2BO00750 1634 aa21.75■■□□□ 1.07
USP28-208ENST00000540438 DIAPH1O60610 1272 aaKnown RBP21.75■■□□□ 1.07
USP28-208ENST00000540438 DAXXQ9UER7 740 aaPredicted RBP21.75■■□□□ 1.07
USP28-208ENST00000540438 DCTN1Q14203 1278 aa21.74■■□□□ 1.07
USP28-208ENST00000540438 ITPRIPQ8IWB1 547 aa21.74■■□□□ 1.07
USP28-208ENST00000540438 SSH1Q8WYL5 1049 aa21.74■■□□□ 1.07
USP28-208ENST00000540438 SLC26A8Q96RN1 970 aa21.74■■□□□ 1.07
USP28-208ENST00000540438 SPRYD3Q8NCJ5 442 aa21.73■■□□□ 1.07
USP28-208ENST00000540438 FAM83GA6ND36 823 aa21.72■■□□□ 1.07
USP28-208ENST00000540438 NOB1Q9ULX3 412 aaKnown RBP21.71■■□□□ 1.07
USP28-208ENST00000540438 PLEKHF1Q96S99 279 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms