RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 ZMYM3Q14202 1370 aa14.3□□□□□ -0.12
TRIM3-211ENST00000532542 SPHKAPQ2M3C7 1700 aa14.3□□□□□ -0.12
TRIM3-211ENST00000532542 PLEKHG5O94827 1062 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 TCP11L2Q8N4U5 519 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 NPC1L1Q9UHC9 1359 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 SBNO2Q9Y2G9 1366 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 IPO8O15397 1037 aaKnown RBP14.29□□□□□ -0.12
TRIM3-211ENST00000532542 EXOC6Q8TAG9 804 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 CCDC61Q9Y6R9 512 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 KIF1BO60333 1816 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 CLTCL1P53675 1640 aa14.29□□□□□ -0.12
TRIM3-211ENST00000532542 RBM19Q9Y4C8 960 aaKnown RBP14.29□□□□□ -0.12
TRIM3-211ENST00000532542 E9PCH4 1651 aa14.28□□□□□ -0.12
TRIM3-211ENST00000532542 PLIN1O60240 522 aa14.28□□□□□ -0.12
TRIM3-211ENST00000532542 SLC26A8Q96RN1 970 aa14.28□□□□□ -0.12
TRIM3-211ENST00000532542 ARHGAP31Q2M1Z3 1444 aa14.28□□□□□ -0.12
TRIM3-211ENST00000532542 TRPM1Q7Z4N2 1603 aa14.28□□□□□ -0.12
TRIM3-211ENST00000532542 LMTK2Q8IWU2 1503 aa14.28□□□□□ -0.12
TRIM3-211ENST00000532542 ANKRD36BQ8N2N9 1353 aa14.27□□□□□ -0.12
TRIM3-211ENST00000532542 CEBPAP49715 358 aaPredicted RBP14.27□□□□□ -0.13
TRIM3-211ENST00000532542 RTF1Q92541 710 aaKnown RBP14.27□□□□□ -0.13
TRIM3-211ENST00000532542 AMPHP49418 695 aa14.26□□□□□ -0.13
TRIM3-211ENST00000532542 NUDT16Q96DE0 195 aaKnown RBP14.26□□□□□ -0.13
TRIM3-211ENST00000532542 WASLO00401 505 aaPredicted RBP14.26□□□□□ -0.13
TRIM3-211ENST00000532542 TCERG1O14776 1098 aaKnown RBP14.25□□□□□ -0.13
TRIM3-211ENST00000532542 RNF17Q9BXT8 1623 aaKnown RBP14.25□□□□□ -0.13
TRIM3-211ENST00000532542 BCL11AQ9H165 835 aa14.25□□□□□ -0.13
TRIM3-211ENST00000532542 SMC4Q9NTJ3 1288 aa14.25□□□□□ -0.13
TRIM3-211ENST00000532542 PIK3C2GO75747 1445 aa14.25□□□□□ -0.13
TRIM3-211ENST00000532542 LRPPRCP42704 1394 aaKnown RBP14.25□□□□□ -0.13
TRIM3-211ENST00000532542 RIPK4P57078 832 aa14.25□□□□□ -0.13
TRIM3-211ENST00000532542 YTHDC2Q9H6S0 1430 aaKnown RBP14.24□□□□□ -0.13
TRIM3-211ENST00000532542 CRBNQ96SW2 442 aa14.24□□□□□ -0.13
TRIM3-211ENST00000532542 CARD14Q9BXL6 1004 aa14.24□□□□□ -0.13
TRIM3-211ENST00000532542 KIDINS220Q9ULH0 1771 aa14.24□□□□□ -0.13
TRIM3-211ENST00000532542 ANKLE2Q86XL3 938 aa14.23□□□□□ -0.13
TRIM3-211ENST00000532542 BCORL1Q5H9F3 1711 aa14.23□□□□□ -0.13
TRIM3-211ENST00000532542 TSPOAP1O95153 1857 aa14.23□□□□□ -0.13
TRIM3-211ENST00000532542 RGS3P49796 1198 aa14.23□□□□□ -0.13
TRIM3-211ENST00000532542 RIMBP3CA6NJZ7 1639 aa14.22□□□□□ -0.13
TRIM3-211ENST00000532542 RIMBP3BA6NNM3 1639 aa14.22□□□□□ -0.13
TRIM3-211ENST00000532542 RIMBP3Q9UFD9 1639 aa14.22□□□□□ -0.13
TRIM3-211ENST00000532542 WDR63Q8IWG1 891 aa14.21□□□□□ -0.13
TRIM3-211ENST00000532542 MAP3K4Q9Y6R4 1608 aa14.21□□□□□ -0.13
TRIM3-211ENST00000532542 SLFN5Q08AF3 891 aa14.2□□□□□ -0.14
TRIM3-211ENST00000532542 MADDQ8WXG6 1647 aa14.2□□□□□ -0.14
TRIM3-211ENST00000532542 INSRP06213 1382 aa14.2□□□□□ -0.14
TRIM3-211ENST00000532542 PMFBP1Q8TBY8 1022 aa14.2□□□□□ -0.14
TRIM3-211ENST00000532542 POLR3AO14802 1390 aaPredicted RBP14.2□□□□□ -0.14
TRIM3-211ENST00000532542 LAMC1P11047 1609 aa14.2□□□□□ -0.14
TRIM3-211ENST00000532542 CENPQQ7L2Z9 268 aaPredicted RBP14.19□□□□□ -0.14
TRIM3-211ENST00000532542 KDM5AP29375 1690 aaKnown RBP14.19□□□□□ -0.14
TRIM3-211ENST00000532542 RWDD1Q9H446 243 aaPredicted RBP14.19□□□□□ -0.14
TRIM3-211ENST00000532542 GLI2P10070 1586 aa14.19□□□□□ -0.14
TRIM3-211ENST00000532542 DIP2CQ9Y2E4 1556 aa14.19□□□□□ -0.14
TRIM3-211ENST00000532542 ERVK-7P63135 1459 aa14.19□□□□□ -0.14
TRIM3-211ENST00000532542 ZKSCAN2Q63HK3 967 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 CLUAP1Q96AJ1 413 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 AMOTL2Q9Y2J4 779 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 HMOX1P09601 288 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 WWC1Q8IX03 1113 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 DDRGK1Q96HY6 314 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 PPRC1Q5VV67 1664 aaKnown RBP14.18□□□□□ -0.14
TRIM3-211ENST00000532542 CEP152O94986 1710 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 ITPRIPQ8IWB1 547 aa14.18□□□□□ -0.14
TRIM3-211ENST00000532542 SYNMO15061 1565 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 PRKAR2BP31323 418 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 BCL2L13Q9BXK5 485 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 ADGRB3O60242 1522 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 ZFYVE9O95405 1425 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 DEPDC5O75140 1603 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 ABCA6Q8N139 1617 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 FCHSD2O94868 740 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 VWDEQ8N2E2 1590 aa14.17□□□□□ -0.14
TRIM3-211ENST00000532542 FYB1O15117 783 aa14.16□□□□□ -0.14
TRIM3-211ENST00000532542 PSME1Q06323 249 aa14.16□□□□□ -0.14
TRIM3-211ENST00000532542 NLRP6P59044 892 aa14.16□□□□□ -0.14
TRIM3-211ENST00000532542 GNAI1P63096 354 aa14.15□□□□□ -0.14
TRIM3-211ENST00000532542 AAMPQ13685 434 aa14.15□□□□□ -0.14
TRIM3-211ENST00000532542 COG6Q9Y2V7 657 aa14.15□□□□□ -0.14
TRIM3-211ENST00000532542 A0A1W2PP64 1363 aa14.14□□□□□ -0.15
TRIM3-211ENST00000532542 CT47B1P0C2W7 299 aaPredicted RBP14.14□□□□□ -0.15
TRIM3-211ENST00000532542 DUSP27Q5VZP5 1158 aa14.14□□□□□ -0.15
TRIM3-211ENST00000532542 ABCC11Q96J66 1382 aa14.14□□□□□ -0.15
TRIM3-211ENST00000532542 LTV1Q96GA3 475 aaPredicted RBP14.14□□□□□ -0.15
TRIM3-211ENST00000532542 PDE3AQ14432 1141 aa14.13□□□□□ -0.15
TRIM3-211ENST00000532542 NME9Q86XW9 330 aa14.13□□□□□ -0.15
TRIM3-211ENST00000532542 CHMP4AQ9BY43 222 aa14.13□□□□□ -0.15
TRIM3-211ENST00000532542 TMEM2Q9UHN6 1383 aa14.13□□□□□ -0.15
TRIM3-211ENST00000532542 CAMSAP1Q5T5Y3 1602 aa14.13□□□□□ -0.15
TRIM3-211ENST00000532542 TMPOP42166 694 aaKnown RBP14.13□□□□□ -0.15
TRIM3-211ENST00000532542 POLR1AO95602 1720 aaPredicted RBP14.12□□□□□ -0.15
TRIM3-211ENST00000532542 KIF16BQ96L93 1317 aa14.12□□□□□ -0.15
TRIM3-211ENST00000532542 DZIP1LQ8IYY4 767 aaKnown RBP14.12□□□□□ -0.15
TRIM3-211ENST00000532542 ABTB2Q8N961 1025 aa14.11□□□□□ -0.15
TRIM3-211ENST00000532542 PPIP5K1Q6PFW1 1433 aa14.11□□□□□ -0.15
TRIM3-211ENST00000532542 NKTRP30414 1462 aaKnown RBP14.11□□□□□ -0.15
TRIM3-211ENST00000532542 NEURL4Q96JN8 1562 aa14.1□□□□□ -0.15
TRIM3-211ENST00000532542 RRS1Q15050 365 aaKnown RBP14.1□□□□□ -0.15
TRIM3-211ENST00000532542 SIRT1Q96EB6 747 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms