RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ORAI2Q96SN7 254 aa15.67■□□□□ 0.1
CD44-227ENST00000528086 KDM2AQ9Y2K7 1162 aa15.67■□□□□ 0.1
CD44-227ENST00000528086 SHPRHQ149N8 1683 aa15.67■□□□□ 0.1
CD44-227ENST00000528086 DCAF11Q8TEB1 546 aa15.66■□□□□ 0.1
CD44-227ENST00000528086 JCADQ9P266 1359 aa15.65■□□□□ 0.1
CD44-227ENST00000528086 RGPD8O14715 1765 aaPredicted RBP15.65■□□□□ 0.1
CD44-227ENST00000528086 SIRT1Q96EB6 747 aa15.65■□□□□ 0.1
CD44-227ENST00000528086 FMN2Q9NZ56 1722 aa15.65■□□□□ 0.1
CD44-227ENST00000528086 DLC1Q96QB1 1528 aa15.63■□□□□ 0.09
CD44-227ENST00000528086 SIN3AQ96ST3 1273 aa15.62■□□□□ 0.09
CD44-227ENST00000528086 USP32Q8NFA0 1604 aa15.61■□□□□ 0.09
CD44-227ENST00000528086 PRAM1Q96QH2 718 aa15.6■□□□□ 0.09
CD44-227ENST00000528086 SOS2Q07890 1332 aaPredicted RBP15.6■□□□□ 0.09
CD44-227ENST00000528086 ARHGEF28Q8N1W1 1705 aaKnown RBP15.6■□□□□ 0.09
CD44-227ENST00000528086 NUTM2FA1L443 756 aa15.59■□□□□ 0.09
CD44-227ENST00000528086 POTEAQ6S8J7 498 aa15.59■□□□□ 0.09
CD44-227ENST00000528086 PXDNQ92626 1479 aa15.59■□□□□ 0.09
CD44-227ENST00000528086 KIAA1210Q9ULL0 1709 aa15.58■□□□□ 0.08
CD44-227ENST00000528086 TRAK1Q9UPV9 953 aa15.58■□□□□ 0.08
CD44-227ENST00000528086 PNPLA6Q8IY17 1366 aa15.58■□□□□ 0.08
CD44-227ENST00000528086 ADGRB2O60241 1585 aa15.58■□□□□ 0.08
CD44-227ENST00000528086 SOCS7O14512 581 aa15.57■□□□□ 0.08
CD44-227ENST00000528086 SAFB2Q14151 953 aaKnown RBP eCLIP15.57■□□□□ 0.08
CD44-227ENST00000528086 NBPF1Q3BBV0 1214 aa15.57■□□□□ 0.08
CD44-227ENST00000528086 STAC3Q96MF2 364 aa15.57■□□□□ 0.08
CD44-227ENST00000528086 L3MBTL2Q969R5 705 aa15.56■□□□□ 0.08
CD44-227ENST00000528086 SPATA31A6Q5VVP1 1343 aa15.56■□□□□ 0.08
CD44-227ENST00000528086 ESCO1Q5FWF5 840 aa15.54■□□□□ 0.08
CD44-227ENST00000528086 PHF23Q9BUL5 403 aaPredicted RBP15.54■□□□□ 0.08
CD44-227ENST00000528086 PRR36Q9H6K5 1346 aa15.53■□□□□ 0.08
CD44-227ENST00000528086 FOXO3O43524 673 aa15.53■□□□□ 0.08
CD44-227ENST00000528086 XPCQ01831 940 aaPredicted RBP15.53■□□□□ 0.08
CD44-227ENST00000528086 TRIM26Q12899 539 aaPredicted RBP15.53■□□□□ 0.08
CD44-227ENST00000528086 LRRC59Q96AG4 307 aaKnown RBP15.53■□□□□ 0.08
CD44-227ENST00000528086 COL22A1Q8NFW1 1626 aaPredicted RBP15.53■□□□□ 0.08
CD44-227ENST00000528086 HIRIP3Q9BW71 556 aaPredicted RBP15.52■□□□□ 0.08
CD44-227ENST00000528086 KIF1AQ12756 1690 aa15.51■□□□□ 0.07
CD44-227ENST00000528086 TRPM1Q7Z4N2 1603 aa15.5■□□□□ 0.07
CD44-227ENST00000528086 MINK1Q8N4C8 1332 aaPredicted RBP15.5■□□□□ 0.07
CD44-227ENST00000528086 NUTM2BA6NNL0 878 aaPredicted RBP15.5■□□□□ 0.07
CD44-227ENST00000528086 NUTM2EB1AL46 878 aaPredicted RBP15.5■□□□□ 0.07
CD44-227ENST00000528086 NUTM2AQ8IVF1 878 aaPredicted RBP15.5■□□□□ 0.07
CD44-227ENST00000528086 POGKQ9P215 609 aa15.5■□□□□ 0.07
CD44-227ENST00000528086 NPHP3Q7Z494 1330 aa15.48■□□□□ 0.07
CD44-227ENST00000528086 NEUROD1Q13562 356 aa15.48■□□□□ 0.07
CD44-227ENST00000528086 NBPF8Q3BBV2 869 aa15.48■□□□□ 0.07
CD44-227ENST00000528086 ANKARQ7Z5J8 1434 aa15.47■□□□□ 0.07
CD44-227ENST00000528086 TRPM3Q9HCF6 1732 aaPredicted RBP15.47■□□□□ 0.07
CD44-227ENST00000528086 PHF8Q9UPP1 1060 aa15.47■□□□□ 0.07
CD44-227ENST00000528086 TULP4Q9NRJ4 1543 aa15.47■□□□□ 0.07
CD44-227ENST00000528086 WASLO00401 505 aaPredicted RBP15.46■□□□□ 0.07
CD44-227ENST00000528086 ATP7BP35670 1465 aa15.46■□□□□ 0.06
CD44-227ENST00000528086 SPATA31A3Q5VYP0 1347 aa15.45■□□□□ 0.06
CD44-227ENST00000528086 MARF1Q9Y4F3 1742 aaKnown RBP15.45■□□□□ 0.06
CD44-227ENST00000528086 KRT28Q7Z3Y7 464 aa15.44■□□□□ 0.06
CD44-227ENST00000528086 PMFBP1Q8TBY8 1022 aa15.44■□□□□ 0.06
CD44-227ENST00000528086 TOPAZ1Q8N9V7 1692 aa15.44■□□□□ 0.06
CD44-227ENST00000528086 AFF2P51816 1311 aa15.43■□□□□ 0.06
CD44-227ENST00000528086 ABCA3Q99758 1704 aa15.43■□□□□ 0.06
CD44-227ENST00000528086 ALS2Q96Q42 1657 aa15.42■□□□□ 0.06
CD44-227ENST00000528086 ADAMTS2O95450 1211 aa15.42■□□□□ 0.06
CD44-227ENST00000528086 QRICH2Q9H0J4 1663 aa15.41■□□□□ 0.06
CD44-227ENST00000528086 MEX3CQ5U5Q3 659 aaKnown RBP15.41■□□□□ 0.06
CD44-227ENST00000528086 C8orf37Q96NL8 207 aa15.41■□□□□ 0.06
CD44-227ENST00000528086 CDK19Q9BWU1 502 aa15.4■□□□□ 0.06
CD44-227ENST00000528086 TNS3Q68CZ2 1445 aa15.4■□□□□ 0.06
CD44-227ENST00000528086 CRYBG1Q9Y4K1 1723 aa15.4■□□□□ 0.06
CD44-227ENST00000528086 SBNO1A3KN83 1393 aa15.39■□□□□ 0.05
CD44-227ENST00000528086 GPRASP1Q5JY77 1395 aa15.39■□□□□ 0.05
CD44-227ENST00000528086 NUDT16Q96DE0 195 aaKnown RBP15.39■□□□□ 0.05
CD44-227ENST00000528086 ITSN1Q15811 1721 aa15.39■□□□□ 0.05
CD44-227ENST00000528086 FNBP4Q8N3X1 1017 aaPredicted RBP15.38■□□□□ 0.05
CD44-227ENST00000528086 CABLES1Q8TDN4 633 aa15.38■□□□□ 0.05
CD44-227ENST00000528086 BCL9LQ86UU0 1499 aa15.38■□□□□ 0.05
CD44-227ENST00000528086 ZNF772Q68DY9 489 aaPredicted RBP15.37■□□□□ 0.05
CD44-227ENST00000528086 CENPJQ9HC77 1338 aaPredicted RBP15.37■□□□□ 0.05
CD44-227ENST00000528086 PSME1Q06323 249 aa15.35■□□□□ 0.05
CD44-227ENST00000528086 NGLY1Q96IV0 654 aa15.35■□□□□ 0.05
CD44-227ENST00000528086 POLR3AO14802 1390 aaPredicted RBP15.35■□□□□ 0.05
CD44-227ENST00000528086 EIF3AQ14152 1382 aaKnown RBP15.35■□□□□ 0.05
CD44-227ENST00000528086 ATRNO75882 1429 aa15.34■□□□□ 0.05
CD44-227ENST00000528086 SLIT2O94813 1529 aa15.34■□□□□ 0.05
CD44-227ENST00000528086 QTRT2Q9H974 415 aaKnown RBP15.34■□□□□ 0.05
CD44-227ENST00000528086 ROCK2O75116 1388 aaKnown RBP15.34■□□□□ 0.05
CD44-227ENST00000528086 RALGAPBQ86X10 1494 aa15.33■□□□□ 0.05
CD44-227ENST00000528086 PLEKHG3A1L390 1219 aa15.33■□□□□ 0.04
CD44-227ENST00000528086 CABP2Q9NPB3 220 aa15.33■□□□□ 0.04
CD44-227ENST00000528086 RGS12O14924 1447 aa15.33■□□□□ 0.04
CD44-227ENST00000528086 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.32■□□□□ 0.04
CD44-227ENST00000528086 CCDC61Q9Y6R9 512 aa15.32■□□□□ 0.04
CD44-227ENST00000528086 ACEP12821 1306 aa15.32■□□□□ 0.04
CD44-227ENST00000528086 CDK12Q9NYV4 1490 aaPredicted RBP15.32■□□□□ 0.04
CD44-227ENST00000528086 RXRBP28702 533 aa15.31■□□□□ 0.04
CD44-227ENST00000528086 USP21Q9UK80 565 aa15.31■□□□□ 0.04
CD44-227ENST00000528086 PLCH1Q4KWH8 1693 aa15.31■□□□□ 0.04
CD44-227ENST00000528086 ARHGEF10O15013 1369 aa15.3■□□□□ 0.04
CD44-227ENST00000528086 PLEKHG5O94827 1062 aa15.3■□□□□ 0.04
CD44-227ENST00000528086 NGDNQ8NEJ9 315 aaKnown RBP15.3■□□□□ 0.04
CD44-227ENST00000528086 GLI3P10071 1580 aa15.29■□□□□ 0.04
CD44-227ENST00000528086 PPIP5K1Q6PFW1 1433 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms