RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 LAMC1P11047 1609 aa6.53□□□□□ -1.36
CHMP4A-202ENST00000524955 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.53□□□□□ -1.36
CHMP4A-202ENST00000524955 RALGAPBQ86X10 1494 aa6.53□□□□□ -1.36
CHMP4A-202ENST00000524955 CENPJQ9HC77 1338 aaPredicted RBP6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 TECPR2O15040 1411 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 ADGRL3Q9HAR2 1447 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 ST20-MTHFSA0A0A6YYL1 179 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 HSPA1LP34931 641 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 ESCO1Q5FWF5 840 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 CADPS2Q86UW7 1296 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 PMFBP1Q8TBY8 1022 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 CABP2Q9NPB3 220 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 NALCNQ8IZF0 1738 aa6.52□□□□□ -1.37
CHMP4A-202ENST00000524955 FAM135BQ49AJ0 1406 aa6.51□□□□□ -1.37
CHMP4A-202ENST00000524955 SRPK2P78362 688 aaKnown RBP6.51□□□□□ -1.37
CHMP4A-202ENST00000524955 BRINP3Q76B58 766 aa6.51□□□□□ -1.37
CHMP4A-202ENST00000524955 SIRT1Q96EB6 747 aa6.51□□□□□ -1.37
CHMP4A-202ENST00000524955 CDK19Q9BWU1 502 aa6.51□□□□□ -1.37
CHMP4A-202ENST00000524955 TIMELESSQ9UNS1 1208 aa6.51□□□□□ -1.37
CHMP4A-202ENST00000524955 PRR36Q9H6K5 1346 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 MST1RQ04912 1400 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 DLC1Q96QB1 1528 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 C1orf167Q5SNV9 1468 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 GPRASP1Q5JY77 1395 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 USP47Q96K76 1375 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 WASLO00401 505 aaPredicted RBP6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 HSPA5P11021 654 aaKnown RBP6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 POLR3GLQ9BT43 218 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 NCOA3Q9Y6Q9 1424 aa6.5□□□□□ -1.37
CHMP4A-202ENST00000524955 IQSEC2Q5JU85 1478 aa6.49□□□□□ -1.37
CHMP4A-202ENST00000524955 FOXO3O43524 673 aa6.49□□□□□ -1.37
CHMP4A-202ENST00000524955 KNDC1Q76NI1 1749 aa6.49□□□□□ -1.37
CHMP4A-202ENST00000524955 ARHGEF28Q8N1W1 1705 aaKnown RBP6.49□□□□□ -1.37
CHMP4A-202ENST00000524955 KIAA1210Q9ULL0 1709 aa6.49□□□□□ -1.37
CHMP4A-202ENST00000524955 NUDT16Q96DE0 195 aaKnown RBP6.48□□□□□ -1.37
CHMP4A-202ENST00000524955 TESK2Q96S53 571 aa6.48□□□□□ -1.37
CHMP4A-202ENST00000524955 EIF3AQ14152 1382 aaKnown RBP6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 DISP3Q9P2K9 1392 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 TULP4Q9NRJ4 1543 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 QRICH2Q9H0J4 1663 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 ROBO1Q9Y6N7 1651 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 EIF4G2P78344 907 aaKnown RBP eCLIP6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 TMC1Q8TDI8 760 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 CABP1Q9NZU7 370 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 PHF8Q9UPP1 1060 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 DCCP43146 1447 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 CDC42BPGQ6DT37 1551 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 EVC2Q86UK5 1308 aa6.47□□□□□ -1.37
CHMP4A-202ENST00000524955 NUTM2BA6NNL0 878 aaPredicted RBP6.46□□□□□ -1.38
CHMP4A-202ENST00000524955 NUTM2EB1AL46 878 aaPredicted RBP6.46□□□□□ -1.38
CHMP4A-202ENST00000524955 C11orf95C9JLR9 678 aaPredicted RBP6.46□□□□□ -1.38
CHMP4A-202ENST00000524955 NUTM2GQ5VZR2 741 aa6.46□□□□□ -1.38
CHMP4A-202ENST00000524955 LMOD2Q6P5Q4 547 aa6.46□□□□□ -1.38
CHMP4A-202ENST00000524955 NUTM2AQ8IVF1 878 aaPredicted RBP6.46□□□□□ -1.38
CHMP4A-202ENST00000524955 NGDNQ8NEJ9 315 aaKnown RBP6.46□□□□□ -1.38
CHMP4A-202ENST00000524955 FMN2Q9NZ56 1722 aa6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 PAK3O75914 559 aaPredicted RBP6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 PSME1Q06323 249 aa6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 KRT28Q7Z3Y7 464 aa6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 SLC12A5Q9H2X9 1139 aa6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 USP32Q8NFA0 1604 aa6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 ATP7BP35670 1465 aa6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 ACEP12821 1306 aa6.45□□□□□ -1.38
CHMP4A-202ENST00000524955 ADGRB2O60241 1585 aa6.44□□□□□ -1.38
CHMP4A-202ENST00000524955 PPIP5K1Q6PFW1 1433 aa6.44□□□□□ -1.38
CHMP4A-202ENST00000524955 TMF1P82094 1093 aa6.44□□□□□ -1.38
CHMP4A-202ENST00000524955 CABLES1Q8TDN4 633 aa6.44□□□□□ -1.38
CHMP4A-202ENST00000524955 CCDC61Q9Y6R9 512 aa6.44□□□□□ -1.38
CHMP4A-202ENST00000524955 ANKARQ7Z5J8 1434 aa6.43□□□□□ -1.38
CHMP4A-202ENST00000524955 CNGB1Q14028 1251 aaPredicted RBP6.43□□□□□ -1.38
CHMP4A-202ENST00000524955 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.43□□□□□ -1.38
CHMP4A-202ENST00000524955 ZRANB1Q9UGI0 708 aa6.43□□□□□ -1.38
CHMP4A-202ENST00000524955 NPHP3Q7Z494 1330 aa6.43□□□□□ -1.38
CHMP4A-202ENST00000524955 PHLPP1O60346 1717 aa6.42□□□□□ -1.38
CHMP4A-202ENST00000524955 RGPD8O14715 1765 aaPredicted RBP6.42□□□□□ -1.38
CHMP4A-202ENST00000524955 SOX12O15370 315 aa6.42□□□□□ -1.38
CHMP4A-202ENST00000524955 LRRC59Q96AG4 307 aaKnown RBP6.42□□□□□ -1.38
CHMP4A-202ENST00000524955 SOS2Q07890 1332 aaPredicted RBP6.42□□□□□ -1.38
CHMP4A-202ENST00000524955 PXDNQ92626 1479 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 COL16A1Q07092 1604 aaPredicted RBP6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 PLEKHG3A1L390 1219 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 ZBTB7CA1YPR0 619 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 ADAMTS2O95450 1211 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 SPATA31A3Q5VYP0 1347 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 ATAD2Q6PL18 1390 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 PNPLA6Q8IY17 1366 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 SBNO2Q9Y2G9 1366 aa6.41□□□□□ -1.38
CHMP4A-202ENST00000524955 AHDC1Q5TGY3 1603 aaPredicted RBP6.4□□□□□ -1.38
CHMP4A-202ENST00000524955 ZEB1P37275 1124 aaPredicted RBP6.4□□□□□ -1.38
CHMP4A-202ENST00000524955 HAP1P54257 671 aaPredicted RBP6.4□□□□□ -1.38
CHMP4A-202ENST00000524955 NME9Q86XW9 330 aa6.4□□□□□ -1.38
CHMP4A-202ENST00000524955 KIF7Q2M1P5 1343 aa6.4□□□□□ -1.39
CHMP4A-202ENST00000524955 A0A1W2PP64 1363 aa6.4□□□□□ -1.39
CHMP4A-202ENST00000524955 POLR3AO14802 1390 aaPredicted RBP6.4□□□□□ -1.39
CHMP4A-202ENST00000524955 KTN1Q86UP2 1357 aaKnown RBP6.4□□□□□ -1.39
CHMP4A-202ENST00000524955 JCADQ9P266 1359 aa6.4□□□□□ -1.39
CHMP4A-202ENST00000524955 NHSL1Q5SYE7 1610 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 FBLN1P23142 703 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 MEX3CQ5U5Q3 659 aaKnown RBP6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 HDGFL2Q7Z4V5 671 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms