RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 ORAI2Q96SN7 254 aa30.37■■■□□ 2.45
VPS28-203ENST00000524521 TRIM26Q12899 539 aaPredicted RBP30.36■■■□□ 2.45
VPS28-203ENST00000524521 DDX17Q92841 729 aaKnown RBP30.36■■■□□ 2.45
VPS28-203ENST00000524521 SAFB2Q14151 953 aaKnown RBP eCLIP30.32■■■□□ 2.44
VPS28-203ENST00000524521 PRAM1Q96QH2 718 aa30.32■■■□□ 2.44
VPS28-203ENST00000524521 NUTM2FA1L443 756 aa30.31■■■□□ 2.44
VPS28-203ENST00000524521 POGKQ9P215 609 aa30.31■■■□□ 2.44
VPS28-203ENST00000524521 TRAK1Q9UPV9 953 aa30.31■■■□□ 2.44
VPS28-203ENST00000524521 CDC42BPGQ6DT37 1551 aa30.31■■■□□ 2.44
VPS28-203ENST00000524521 ESCO1Q5FWF5 840 aa30.29■■■□□ 2.44
VPS28-203ENST00000524521 LRRC59Q96AG4 307 aaKnown RBP30.29■■■□□ 2.44
VPS28-203ENST00000524521 NHSL1Q5SYE7 1610 aa30.29■■■□□ 2.44
VPS28-203ENST00000524521 SIN3AQ96ST3 1273 aa30.28■■■□□ 2.44
VPS28-203ENST00000524521 ADGRB1O14514 1584 aa30.28■■■□□ 2.44
VPS28-203ENST00000524521 SPATA31A6Q5VVP1 1343 aa30.26■■■□□ 2.44
VPS28-203ENST00000524521 NEUROD1Q13562 356 aa30.24■■■□□ 2.43
VPS28-203ENST00000524521 DLC1Q96QB1 1528 aa30.23■■■□□ 2.43
VPS28-203ENST00000524521 RGS17Q9UGC6 210 aaPredicted RBP30.23■■■□□ 2.43
VPS28-203ENST00000524521 SHPRHQ149N8 1683 aa30.21■■■□□ 2.43
VPS28-203ENST00000524521 NUTM2BA6NNL0 878 aaPredicted RBP30.21■■■□□ 2.43
VPS28-203ENST00000524521 NUTM2EB1AL46 878 aaPredicted RBP30.21■■■□□ 2.43
VPS28-203ENST00000524521 NUTM2AQ8IVF1 878 aaPredicted RBP30.21■■■□□ 2.43
VPS28-203ENST00000524521 MEX3CQ5U5Q3 659 aaKnown RBP30.2■■■□□ 2.43
VPS28-203ENST00000524521 L3MBTL2Q969R5 705 aa30.2■■■□□ 2.43
VPS28-203ENST00000524521 SOS2Q07890 1332 aaPredicted RBP30.19■■■□□ 2.42
VPS28-203ENST00000524521 FOXO3O43524 673 aa30.18■■■□□ 2.42
VPS28-203ENST00000524521 FMN2Q9NZ56 1722 aa30.17■■■□□ 2.42
VPS28-203ENST00000524521 SOCS7O14512 581 aa30.17■■■□□ 2.42
VPS28-203ENST00000524521 NPHP3Q7Z494 1330 aa30.17■■■□□ 2.42
VPS28-203ENST00000524521 LRP6O75581 1613 aa30.16■■■□□ 2.42
VPS28-203ENST00000524521 HIRIP3Q9BW71 556 aaPredicted RBP30.16■■■□□ 2.42
VPS28-203ENST00000524521 MINK1Q8N4C8 1332 aaPredicted RBP30.16■■■□□ 2.42
VPS28-203ENST00000524521 NBPF1Q3BBV0 1214 aa30.14■■■□□ 2.42
VPS28-203ENST00000524521 PNPLA6Q8IY17 1366 aa30.14■■■□□ 2.41
VPS28-203ENST00000524521 XPCQ01831 940 aaPredicted RBP30.13■■■□□ 2.41
VPS28-203ENST00000524521 POTEAQ6S8J7 498 aa30.11■■■□□ 2.41
VPS28-203ENST00000524521 KIAA1210Q9ULL0 1709 aa30.1■■■□□ 2.41
VPS28-203ENST00000524521 PHF8Q9UPP1 1060 aa30.09■■■□□ 2.41
VPS28-203ENST00000524521 RGPD8O14715 1765 aaPredicted RBP30.08■■■□□ 2.41
VPS28-203ENST00000524521 WASLO00401 505 aaPredicted RBP30.06■■■□□ 2.4
VPS28-203ENST00000524521 PXDNQ92626 1479 aa30.06■■■□□ 2.4
VPS28-203ENST00000524521 ARHGEF28Q8N1W1 1705 aaKnown RBP30.05■■■□□ 2.4
VPS28-203ENST00000524521 KRT28Q7Z3Y7 464 aa30.05■■■□□ 2.4
VPS28-203ENST00000524521 ADGRB2O60241 1585 aa30.05■■■□□ 2.4
VPS28-203ENST00000524521 KIF1AQ12756 1690 aa30.03■■■□□ 2.4
VPS28-203ENST00000524521 PMFBP1Q8TBY8 1022 aa30.02■■■□□ 2.4
VPS28-203ENST00000524521 ANKARQ7Z5J8 1434 aa30.02■■■□□ 2.4
VPS28-203ENST00000524521 ADAMTS2O95450 1211 aa30.01■■■□□ 2.39
VPS28-203ENST00000524521 ZNF772Q68DY9 489 aaPredicted RBP30.01■■■□□ 2.39
VPS28-203ENST00000524521 C8orf37Q96NL8 207 aa30■■■□□ 2.39
VPS28-203ENST00000524521 EIF3AQ14152 1382 aaKnown RBP30■■■□□ 2.39
VPS28-203ENST00000524521 PSME1Q06323 249 aa29.99■■■□□ 2.39
VPS28-203ENST00000524521 PRR36Q9H6K5 1346 aa29.98■■■□□ 2.39
VPS28-203ENST00000524521 USP32Q8NFA0 1604 aa29.98■■■□□ 2.39
VPS28-203ENST00000524521 AFF2P51816 1311 aa29.96■■■□□ 2.39
VPS28-203ENST00000524521 SPATA31A3Q5VYP0 1347 aa29.96■■■□□ 2.39
VPS28-203ENST00000524521 CDK19Q9BWU1 502 aa29.96■■■□□ 2.39
VPS28-203ENST00000524521 TULP4Q9NRJ4 1543 aa29.96■■■□□ 2.39
VPS28-203ENST00000524521 NGLY1Q96IV0 654 aa29.95■■■□□ 2.39
VPS28-203ENST00000524521 NUDT16Q96DE0 195 aaKnown RBP29.93■■■□□ 2.38
VPS28-203ENST00000524521 CENPJQ9HC77 1338 aaPredicted RBP29.93■■■□□ 2.38
VPS28-203ENST00000524521 COL22A1Q8NFW1 1626 aaPredicted RBP29.93■■■□□ 2.38
VPS28-203ENST00000524521 TONSLQ96HA7 1378 aa29.92■■■□□ 2.38
VPS28-203ENST00000524521 NBPF8Q3BBV2 869 aa29.92■■■□□ 2.38
VPS28-203ENST00000524521 LMOD2Q6P5Q4 547 aa29.91■■■□□ 2.38
VPS28-203ENST00000524521 TRPM1Q7Z4N2 1603 aa29.91■■■□□ 2.38
VPS28-203ENST00000524521 ROCK2O75116 1388 aaKnown RBP29.9■■■□□ 2.38
VPS28-203ENST00000524521 NGDNQ8NEJ9 315 aaKnown RBP29.9■■■□□ 2.38
VPS28-203ENST00000524521 SBNO1A3KN83 1393 aa29.88■■■□□ 2.37
VPS28-203ENST00000524521 GPRASP1Q5JY77 1395 aa29.87■■■□□ 2.37
VPS28-203ENST00000524521 TNS3Q68CZ2 1445 aa29.87■■■□□ 2.37
VPS28-203ENST00000524521 PLEKHG5O94827 1062 aa29.86■■■□□ 2.37
VPS28-203ENST00000524521 RXRBP28702 533 aa29.85■■■□□ 2.37
VPS28-203ENST00000524521 PCGF6Q9BYE7 350 aa29.85■■■□□ 2.37
VPS28-203ENST00000524521 QTRT2Q9H974 415 aaKnown RBP29.85■■■□□ 2.37
VPS28-203ENST00000524521 SRPK2P78362 688 aaKnown RBP29.84■■■□□ 2.37
VPS28-203ENST00000524521 ATP7BP35670 1465 aa29.84■■■□□ 2.37
VPS28-203ENST00000524521 HAP1P54257 671 aaPredicted RBP29.83■■■□□ 2.37
VPS28-203ENST00000524521 CCDC61Q9Y6R9 512 aa29.83■■■□□ 2.37
VPS28-203ENST00000524521 CABLES1Q8TDN4 633 aa29.82■■■□□ 2.36
VPS28-203ENST00000524521 USP21Q9UK80 565 aa29.82■■■□□ 2.36
VPS28-203ENST00000524521 ARHGEF10O15013 1369 aa29.8■■■□□ 2.36
VPS28-203ENST00000524521 PAK3O75914 559 aaPredicted RBP29.8■■■□□ 2.36
VPS28-203ENST00000524521 CABP2Q9NPB3 220 aa29.8■■■□□ 2.36
VPS28-203ENST00000524521 ITSN1Q15811 1721 aa29.79■■■□□ 2.36
VPS28-203ENST00000524521 QRICH2Q9H0J4 1663 aa29.79■■■□□ 2.36
VPS28-203ENST00000524521 FNBP4Q8N3X1 1017 aaPredicted RBP29.79■■■□□ 2.36
VPS28-203ENST00000524521 CARD11Q9BXL7 1154 aa29.77■■■□□ 2.36
VPS28-203ENST00000524521 PLEKHG3A1L390 1219 aa29.76■■■□□ 2.35
VPS28-203ENST00000524521 ACEP12821 1306 aa29.75■■■□□ 2.35
VPS28-203ENST00000524521 TRPM3Q9HCF6 1732 aaPredicted RBP29.74■■■□□ 2.35
VPS28-203ENST00000524521 MARF1Q9Y4F3 1742 aaKnown RBP29.74■■■□□ 2.35
VPS28-203ENST00000524521 RBM6P78332 1123 aaKnown RBP29.74■■■□□ 2.35
VPS28-203ENST00000524521 EVC2Q86UK5 1308 aa29.73■■■□□ 2.35
VPS28-203ENST00000524521 TRPC5Q9UL62 973 aaPredicted RBP29.73■■■□□ 2.35
VPS28-203ENST00000524521 POLR3AO14802 1390 aaPredicted RBP29.71■■■□□ 2.35
VPS28-203ENST00000524521 TOPAZ1Q8N9V7 1692 aa29.71■■■□□ 2.35
VPS28-203ENST00000524521 PPIP5K1Q6PFW1 1433 aa29.7■■■□□ 2.34
VPS28-203ENST00000524521 RALGAPBQ86X10 1494 aa29.69■■■□□ 2.34
VPS28-203ENST00000524521 ALS2Q96Q42 1657 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms