RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 DHX57Q6P158 1386 aaKnown RBP43.46■■■■■ 4.55
SYNPO-203ENST00000518872 RGS17Q9UGC6 210 aaPredicted RBP43.44■■■■■ 4.54
SYNPO-203ENST00000518872 WAPLQ7Z5K2 1190 aa43.42■■■■■ 4.54
SYNPO-203ENST00000518872 ADGRB1O14514 1584 aa43.41■■■■■ 4.54
SYNPO-203ENST00000518872 PLEKHH1Q9ULM0 1364 aa43.41■■■■■ 4.54
SYNPO-203ENST00000518872 DLC1Q96QB1 1528 aa43.39■■■■■ 4.54
SYNPO-203ENST00000518872 DCAF11Q8TEB1 546 aa43.38■■■■■ 4.53
SYNPO-203ENST00000518872 LRRC59Q96AG4 307 aaKnown RBP43.37■■■■■ 4.53
SYNPO-203ENST00000518872 LRP6O75581 1613 aa43.36■■■■■ 4.53
SYNPO-203ENST00000518872 ORAI2Q96SN7 254 aa43.35■■■■■ 4.53
SYNPO-203ENST00000518872 FMN2Q9NZ56 1722 aa43.34■■■■■ 4.53
SYNPO-203ENST00000518872 SOS2Q07890 1332 aaPredicted RBP43.3■■■■■ 4.52
SYNPO-203ENST00000518872 DDX17Q92841 729 aaKnown RBP43.3■■■■■ 4.52
SYNPO-203ENST00000518872 KDM2AQ9Y2K7 1162 aa43.3■■■■■ 4.52
SYNPO-203ENST00000518872 PNPLA6Q8IY17 1366 aa43.25■■■■■ 4.51
SYNPO-203ENST00000518872 ESCO1Q5FWF5 840 aa43.21■■■■■ 4.51
SYNPO-203ENST00000518872 PRAM1Q96QH2 718 aa43.21■■■■■ 4.51
SYNPO-203ENST00000518872 ADGRB2O60241 1585 aa43.2■■■■■ 4.51
SYNPO-203ENST00000518872 NPHP3Q7Z494 1330 aa43.2■■■■■ 4.51
SYNPO-203ENST00000518872 KIAA1210Q9ULL0 1709 aa43.19■■■■■ 4.51
SYNPO-203ENST00000518872 KIF1AQ12756 1690 aa43.18■■■■■ 4.5
SYNPO-203ENST00000518872 POTEAQ6S8J7 498 aa43.18■■■■■ 4.5
SYNPO-203ENST00000518872 PXDNQ92626 1479 aa43.15■■■■■ 4.5
SYNPO-203ENST00000518872 MEX3CQ5U5Q3 659 aaKnown RBP43.14■■■■■ 4.5
SYNPO-203ENST00000518872 POGKQ9P215 609 aa43.13■■■■■ 4.49
SYNPO-203ENST00000518872 COL22A1Q8NFW1 1626 aaPredicted RBP43.12■■■■■ 4.49
SYNPO-203ENST00000518872 RGPD8O14715 1765 aaPredicted RBP43.12■■■■■ 4.49
SYNPO-203ENST00000518872 TRAK1Q9UPV9 953 aa43.11■■■■■ 4.49
SYNPO-203ENST00000518872 NUTM2FA1L443 756 aa43.1■■■■■ 4.49
SYNPO-203ENST00000518872 ARHGEF28Q8N1W1 1705 aaKnown RBP43.09■■■■■ 4.49
SYNPO-203ENST00000518872 NUTM2BA6NNL0 878 aaPredicted RBP43.08■■■■■ 4.49
SYNPO-203ENST00000518872 NUTM2EB1AL46 878 aaPredicted RBP43.08■■■■■ 4.49
SYNPO-203ENST00000518872 NUTM2AQ8IVF1 878 aaPredicted RBP43.08■■■■■ 4.49
SYNPO-203ENST00000518872 FOXO3O43524 673 aa43.07■■■■■ 4.49
SYNPO-203ENST00000518872 SAFB2Q14151 953 aaKnown RBP eCLIP43.07■■■■■ 4.49
SYNPO-203ENST00000518872 ZNF772Q68DY9 489 aaPredicted RBP43.07■■■■■ 4.49
SYNPO-203ENST00000518872 ANKARQ7Z5J8 1434 aa43.06■■■■■ 4.48
SYNPO-203ENST00000518872 USP32Q8NFA0 1604 aa43.02■■■■■ 4.48
SYNPO-203ENST00000518872 EIF3AQ14152 1382 aaKnown RBP42.98■■■■■ 4.47
SYNPO-203ENST00000518872 PHF8Q9UPP1 1060 aa42.97■■■■■ 4.47
SYNPO-203ENST00000518872 TULP4Q9NRJ4 1543 aa42.93■■■■■ 4.46
SYNPO-203ENST00000518872 AFF2P51816 1311 aa42.93■■■■■ 4.46
SYNPO-203ENST00000518872 XPCQ01831 940 aaPredicted RBP42.92■■■■■ 4.46
SYNPO-203ENST00000518872 MINK1Q8N4C8 1332 aaPredicted RBP42.92■■■■■ 4.46
SYNPO-203ENST00000518872 WASLO00401 505 aaPredicted RBP42.9■■■■■ 4.46
SYNPO-203ENST00000518872 L3MBTL2Q969R5 705 aa42.9■■■■■ 4.46
SYNPO-203ENST00000518872 HIRIP3Q9BW71 556 aaPredicted RBP42.9■■■■■ 4.46
SYNPO-203ENST00000518872 SPATA31A3Q5VYP0 1347 aa42.9■■■■■ 4.46
SYNPO-203ENST00000518872 SIN3AQ96ST3 1273 aa42.89■■■■■ 4.46
SYNPO-203ENST00000518872 TRIM26Q12899 539 aaPredicted RBP42.88■■■■■ 4.45
SYNPO-203ENST00000518872 KRT28Q7Z3Y7 464 aa42.88■■■■■ 4.45
SYNPO-203ENST00000518872 C8orf37Q96NL8 207 aa42.87■■■■■ 4.45
SYNPO-203ENST00000518872 MARF1Q9Y4F3 1742 aaKnown RBP42.87■■■■■ 4.45
SYNPO-203ENST00000518872 NBPF1Q3BBV0 1214 aa42.85■■■■■ 4.45
SYNPO-203ENST00000518872 ADAMTS2O95450 1211 aa42.84■■■■■ 4.45
SYNPO-203ENST00000518872 SBNO1A3KN83 1393 aa42.83■■■■■ 4.45
SYNPO-203ENST00000518872 PRR36Q9H6K5 1346 aa42.83■■■■■ 4.45
SYNPO-203ENST00000518872 PSME1Q06323 249 aa42.83■■■■■ 4.45
SYNPO-203ENST00000518872 TNS3Q68CZ2 1445 aa42.82■■■■■ 4.45
SYNPO-203ENST00000518872 ITSN1Q15811 1721 aa42.81■■■■■ 4.44
SYNPO-203ENST00000518872 CDK12Q9NYV4 1490 aaPredicted RBP42.8■■■■■ 4.44
SYNPO-203ENST00000518872 NGLY1Q96IV0 654 aa42.79■■■■■ 4.44
SYNPO-203ENST00000518872 TRPM1Q7Z4N2 1603 aa42.79■■■■■ 4.44
SYNPO-203ENST00000518872 ATP7BP35670 1465 aa42.77■■■■■ 4.44
SYNPO-203ENST00000518872 RXRBP28702 533 aa42.76■■■■■ 4.44
SYNPO-203ENST00000518872 FNBP4Q8N3X1 1017 aaPredicted RBP42.76■■■■■ 4.44
SYNPO-203ENST00000518872 TRPM3Q9HCF6 1732 aaPredicted RBP42.75■■■■■ 4.43
SYNPO-203ENST00000518872 NEUROD1Q13562 356 aa42.75■■■■■ 4.43
SYNPO-203ENST00000518872 PMFBP1Q8TBY8 1022 aa42.75■■■■■ 4.43
SYNPO-203ENST00000518872 ARHGEF10O15013 1369 aa42.72■■■■■ 4.43
SYNPO-203ENST00000518872 QTRT2Q9H974 415 aaKnown RBP42.69■■■■■ 4.42
SYNPO-203ENST00000518872 TOPAZ1Q8N9V7 1692 aa42.69■■■■■ 4.42
SYNPO-203ENST00000518872 GPRASP1Q5JY77 1395 aa42.67■■■■■ 4.42
SYNPO-203ENST00000518872 ALS2Q96Q42 1657 aa42.67■■■■■ 4.42
SYNPO-203ENST00000518872 NUDT16Q96DE0 195 aaKnown RBP42.67■■■■■ 4.42
SYNPO-203ENST00000518872 CENPJQ9HC77 1338 aaPredicted RBP42.67■■■■■ 4.42
SYNPO-203ENST00000518872 ABCA3Q99758 1704 aa42.66■■■■■ 4.42
SYNPO-203ENST00000518872 RBM6P78332 1123 aaKnown RBP42.66■■■■■ 4.42
SYNPO-203ENST00000518872 CDK19Q9BWU1 502 aa42.66■■■■■ 4.42
SYNPO-203ENST00000518872 USP21Q9UK80 565 aa42.66■■■■■ 4.42
SYNPO-203ENST00000518872 QRICH2Q9H0J4 1663 aa42.64■■■■■ 4.42
SYNPO-203ENST00000518872 TNKS1BP1Q9C0C2 1729 aaKnown RBP42.62■■■■■ 4.41
SYNPO-203ENST00000518872 TRPC5Q9UL62 973 aaPredicted RBP42.61■■■■■ 4.41
SYNPO-203ENST00000518872 ATRNO75882 1429 aa42.61■■■■■ 4.41
SYNPO-203ENST00000518872 BCL9LQ86UU0 1499 aa42.61■■■■■ 4.41
SYNPO-203ENST00000518872 NGDNQ8NEJ9 315 aaKnown RBP42.59■■■■■ 4.41
SYNPO-203ENST00000518872 CCDC61Q9Y6R9 512 aa42.58■■■■■ 4.41
SYNPO-203ENST00000518872 SLIT2O94813 1529 aa42.57■■■■■ 4.41
SYNPO-203ENST00000518872 ROCK2O75116 1388 aaKnown RBP42.57■■■■■ 4.41
SYNPO-203ENST00000518872 POLR3AO14802 1390 aaPredicted RBP42.56■■■■■ 4.4
SYNPO-203ENST00000518872 RGS12O14924 1447 aa42.54■■■■■ 4.4
SYNPO-203ENST00000518872 LMOD2Q6P5Q4 547 aa42.53■■■■■ 4.4
SYNPO-203ENST00000518872 PLEKHG3A1L390 1219 aa42.52■■■■■ 4.4
SYNPO-203ENST00000518872 NBPF8Q3BBV2 869 aa42.51■■■■■ 4.4
SYNPO-203ENST00000518872 CABLES1Q8TDN4 633 aa42.51■■■■■ 4.4
SYNPO-203ENST00000518872 CRYBG1Q9Y4K1 1723 aa42.5■■■■■ 4.39
SYNPO-203ENST00000518872 TONSLQ96HA7 1378 aa42.5■■■■■ 4.39
SYNPO-203ENST00000518872 NWD2Q9ULI1 1742 aa42.49■■■■■ 4.39
SYNPO-203ENST00000518872 HAP1P54257 671 aaPredicted RBP42.49■■■■■ 4.39
SYNPO-203ENST00000518872 PLCH1Q4KWH8 1693 aa42.46■■■■■ 4.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms