RNA–Protein interactions for RNA: ENST00000515824.1

LMNA-225, Transcript of lamin A/C, human

TSL 2

Gene LMNA, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-225	ENST00000515824	C1orf167	Q5SNV9	1468 aa		27.93	■■■□□ 2.06
LMNA-225	ENST00000515824	SAFB2	Q14151	953 aa	Known RBP eCLIP	27.91	■■■□□ 2.06
LMNA-225	ENST00000515824	PCGF6	Q9BYE7	350 aa		27.91	■■■□□ 2.06
LMNA-225	ENST00000515824	DLC1	Q96QB1	1528 aa		27.9	■■■□□ 2.06
LMNA-225	ENST00000515824	PHLPP1	O60346	1717 aa		27.89	■■■□□ 2.06
LMNA-225	ENST00000515824	CDC42BPG	Q6DT37	1551 aa		27.88	■■■□□ 2.05
LMNA-225	ENST00000515824	ORAI2	Q96SN7	254 aa		27.88	■■■□□ 2.05
LMNA-225	ENST00000515824	AHDC1	Q5TGY3	1603 aa	Predicted RBP	27.87	■■■□□ 2.05
LMNA-225	ENST00000515824	ESCO1	Q5FWF5	840 aa		27.86	■■■□□ 2.05
LMNA-225	ENST00000515824	JCAD	Q9P266	1359 aa		27.86	■■■□□ 2.05
LMNA-225	ENST00000515824	NUTM2F	A1L443	756 aa		27.85	■■■□□ 2.05
LMNA-225	ENST00000515824	NBPF1	Q3BBV0	1214 aa		27.85	■■■□□ 2.05
LMNA-225	ENST00000515824	COL16A1	Q07092	1604 aa	Predicted RBP	27.82	■■■□□ 2.04
LMNA-225	ENST00000515824	KIAA1210	Q9ULL0	1709 aa		27.82	■■■□□ 2.04
LMNA-225	ENST00000515824	DDX17	Q92841	729 aa	Known RBP	27.82	■■■□□ 2.04
LMNA-225	ENST00000515824	LRRC59	Q96AG4	307 aa	Known RBP	27.81	■■■□□ 2.04
LMNA-225	ENST00000515824	MED1	Q15648	1581 aa	Predicted RBP	27.81	■■■□□ 2.04
LMNA-225	ENST00000515824	TONSL	Q96HA7	1378 aa		27.8	■■■□□ 2.04
LMNA-225	ENST00000515824	MINK1	Q8N4C8	1332 aa	Predicted RBP	27.78	■■■□□ 2.04
LMNA-225	ENST00000515824	PHF23	Q9BUL5	403 aa	Predicted RBP	27.78	■■■□□ 2.04
LMNA-225	ENST00000515824	HIRIP3	Q9BW71	556 aa	Predicted RBP	27.77	■■■□□ 2.04
LMNA-225	ENST00000515824	NHSL1	Q5SYE7	1610 aa		27.76	■■■□□ 2.03
LMNA-225	ENST00000515824	SPATA31A6	Q5VVP1	1343 aa		27.75	■■■□□ 2.03
LMNA-225	ENST00000515824	NPHP3	Q7Z494	1330 aa		27.75	■■■□□ 2.03
LMNA-225	ENST00000515824	SOS2	Q07890	1332 aa	Predicted RBP	27.74	■■■□□ 2.03
LMNA-225	ENST00000515824	FOXO3	O43524	673 aa		27.74	■■■□□ 2.03
LMNA-225	ENST00000515824	FMN2	Q9NZ56	1722 aa		27.73	■■■□□ 2.03
LMNA-225	ENST00000515824	WASL	O00401	505 aa	Predicted RBP	27.73	■■■□□ 2.03
LMNA-225	ENST00000515824	EIF3A	Q14152	1382 aa	Known RBP	27.71	■■■□□ 2.03
LMNA-225	ENST00000515824	NBPF8	Q3BBV2	869 aa		27.7	■■■□□ 2.02
LMNA-225	ENST00000515824	PHF8	Q9UPP1	1060 aa		27.7	■■■□□ 2.02
LMNA-225	ENST00000515824	ROCK2	O75116	1388 aa	Known RBP	27.7	■■■□□ 2.02
LMNA-225	ENST00000515824	ARHGEF28	Q8N1W1	1705 aa	Known RBP	27.7	■■■□□ 2.02
LMNA-225	ENST00000515824	ADGRB2	O60241	1585 aa		27.69	■■■□□ 2.02
LMNA-225	ENST00000515824	ANKAR	Q7Z5J8	1434 aa		27.67	■■■□□ 2.02
LMNA-225	ENST00000515824	CENPJ	Q9HC77	1338 aa	Predicted RBP	27.67	■■■□□ 2.02
LMNA-225	ENST00000515824	CLSPN	Q9HAW4	1339 aa		27.66	■■■□□ 2.02
LMNA-225	ENST00000515824	SHPRH	Q149N8	1683 aa		27.65	■■■□□ 2.02
LMNA-225	ENST00000515824	XPC	Q01831	940 aa	Predicted RBP	27.65	■■■□□ 2.02
LMNA-225	ENST00000515824	TRPM1	Q7Z4N2	1603 aa		27.65	■■■□□ 2.02
LMNA-225	ENST00000515824	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.64	■■■□□ 2.02
LMNA-225	ENST00000515824	NUTM2E	B1AL46	878 aa	Predicted RBP	27.64	■■■□□ 2.02
LMNA-225	ENST00000515824	MEX3C	Q5U5Q3	659 aa	Known RBP	27.64	■■■□□ 2.02
LMNA-225	ENST00000515824	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.64	■■■□□ 2.02
LMNA-225	ENST00000515824	CDK19	Q9BWU1	502 aa		27.64	■■■□□ 2.02
LMNA-225	ENST00000515824	PNPLA6	Q8IY17	1366 aa		27.63	■■■□□ 2.01
LMNA-225	ENST00000515824	ILDR2	Q71H61	639 aa		27.63	■■■□□ 2.01
LMNA-225	ENST00000515824	KRT28	Q7Z3Y7	464 aa		27.63	■■■□□ 2.01
LMNA-225	ENST00000515824	PSME1	Q06323	249 aa		27.62	■■■□□ 2.01
LMNA-225	ENST00000515824	PMFBP1	Q8TBY8	1022 aa		27.62	■■■□□ 2.01
LMNA-225	ENST00000515824	PXDN	Q92626	1479 aa		27.61	■■■□□ 2.01
LMNA-225	ENST00000515824	KIF1A	Q12756	1690 aa		27.61	■■■□□ 2.01
LMNA-225	ENST00000515824	PRR36	Q9H6K5	1346 aa		27.61	■■■□□ 2.01
LMNA-225	ENST00000515824	TULP4	Q9NRJ4	1543 aa		27.61	■■■□□ 2.01
LMNA-225	ENST00000515824	NUDT16	Q96DE0	195 aa	Known RBP	27.6	■■■□□ 2.01
LMNA-225	ENST00000515824	CARD11	Q9BXL7	1154 aa		27.59	■■■□□ 2.01
LMNA-225	ENST00000515824	GPRASP1	Q5JY77	1395 aa		27.59	■■■□□ 2.01
LMNA-225	ENST00000515824	RGPD8	O14715	1765 aa	Predicted RBP	27.58	■■■□□ 2.01
LMNA-225	ENST00000515824	RGS17	Q9UGC6	210 aa	Predicted RBP	27.58	■■■□□ 2.01
LMNA-225	ENST00000515824	LRP6	O75581	1613 aa		27.57	■■■□□ 2
LMNA-225	ENST00000515824	USP32	Q8NFA0	1604 aa		27.56	■■■□□ 2
LMNA-225	ENST00000515824	CCER1	Q8TC90	406 aa	Predicted RBP	27.56	■■■□□ 2
LMNA-225	ENST00000515824	TIMELESS	Q9UNS1	1208 aa		27.56	■■■□□ 2
LMNA-225	ENST00000515824	NGDN	Q8NEJ9	315 aa	Known RBP	27.55	■■■□□ 2
LMNA-225	ENST00000515824	SRPK2	P78362	688 aa	Known RBP	27.54	■■■□□ 2
LMNA-225	ENST00000515824	SPATA31A3	Q5VYP0	1347 aa		27.54	■■■□□ 2
LMNA-225	ENST00000515824	CCDC61	Q9Y6R9	512 aa		27.54	■■■□□ 2
LMNA-225	ENST00000515824	RALGAPB	Q86X10	1494 aa		27.52	■■■□□ 2
LMNA-225	ENST00000515824	ATP7B	P35670	1465 aa		27.51	■■□□□ 1.99
LMNA-225	ENST00000515824	SBNO1	A3KN83	1393 aa		27.5	■■□□□ 1.99
LMNA-225	ENST00000515824	EVC2	Q86UK5	1308 aa		27.49	■■□□□ 1.99
LMNA-225	ENST00000515824	ADAMTS2	O95450	1211 aa		27.49	■■□□□ 1.99
LMNA-225	ENST00000515824	CABP2	Q9NPB3	220 aa		27.49	■■□□□ 1.99
LMNA-225	ENST00000515824	ZNF772	Q68DY9	489 aa	Predicted RBP	27.48	■■□□□ 1.99
LMNA-225	ENST00000515824	LMOD2	Q6P5Q4	547 aa		27.48	■■□□□ 1.99
LMNA-225	ENST00000515824	QRICH2	Q9H0J4	1663 aa		27.47	■■□□□ 1.99
LMNA-225	ENST00000515824	C8orf37	Q96NL8	207 aa		27.47	■■□□□ 1.99
LMNA-225	ENST00000515824	PLEKHG3	A1L390	1219 aa		27.46	■■□□□ 1.99
LMNA-225	ENST00000515824	POTEA	Q6S8J7	498 aa		27.46	■■□□□ 1.99
LMNA-225	ENST00000515824	TNS3	Q68CZ2	1445 aa		27.46	■■□□□ 1.99
LMNA-225	ENST00000515824	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.45	■■□□□ 1.98
LMNA-225	ENST00000515824	NGLY1	Q96IV0	654 aa		27.44	■■□□□ 1.98
LMNA-225	ENST00000515824	ARHGEF10	O15013	1369 aa		27.44	■■□□□ 1.98
LMNA-225	ENST00000515824	ACE	P12821	1306 aa		27.43	■■□□□ 1.98
LMNA-225	ENST00000515824	ITSN1	Q15811	1721 aa		27.43	■■□□□ 1.98
LMNA-225	ENST00000515824	PAK3	O75914	559 aa	Predicted RBP	27.42	■■□□□ 1.98
LMNA-225	ENST00000515824	AFF2	P51816	1311 aa		27.41	■■□□□ 1.98
LMNA-225	ENST00000515824	HAP1	P54257	671 aa	Predicted RBP	27.41	■■□□□ 1.98
LMNA-225	ENST00000515824	POLR3A	O14802	1390 aa	Predicted RBP	27.4	■■□□□ 1.98
LMNA-225	ENST00000515824	SBNO2	Q9Y2G9	1366 aa		27.39	■■□□□ 1.98
LMNA-225	ENST00000515824	PPIP5K1	Q6PFW1	1433 aa		27.39	■■□□□ 1.97
LMNA-225	ENST00000515824	CABP1	Q9NZU7	370 aa		27.38	■■□□□ 1.97
LMNA-225	ENST00000515824	SOCS7	O14512	581 aa		27.37	■■□□□ 1.97
LMNA-225	ENST00000515824	PLEKHG5	O94827	1062 aa		27.37	■■□□□ 1.97
LMNA-225	ENST00000515824	CABLES1	Q8TDN4	633 aa		27.36	■■□□□ 1.97
LMNA-225	ENST00000515824	TOPAZ1	Q8N9V7	1692 aa		27.35	■■□□□ 1.97
LMNA-225	ENST00000515824	SLC24A1	O60721	1099 aa		27.34	■■□□□ 1.97
LMNA-225	ENST00000515824	FNBP4	Q8N3X1	1017 aa	Predicted RBP	27.34	■■□□□ 1.97
LMNA-225	ENST00000515824	ST20-MTHFS	A0A0A6YYL1	179 aa		27.33	■■□□□ 1.97
LMNA-225	ENST00000515824	USP21	Q9UK80	565 aa		27.33	■■□□□ 1.97

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms