RNA–Protein interactions for RNA: ENST00000515066.6

AP3S1-208, Transcript of adaptor related protein complex 3 subunit sigma 1, humanhuman

TSL 2

Gene AP3S1, Length 1,670 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S1-208ENST00000515066 SAFB2Q14151 953 aaKnown RBP eCLIP23.5■■□□□ 1.35
AP3S1-208ENST00000515066 POGKQ9P215 609 aa23.48■■□□□ 1.35
AP3S1-208ENST00000515066 TMF1P82094 1093 aa23.47■■□□□ 1.35
AP3S1-208ENST00000515066 ADGRB2O60241 1585 aa23.47■■□□□ 1.35
AP3S1-208ENST00000515066 MYOM1P52179 1685 aa23.45■■□□□ 1.35
AP3S1-208ENST00000515066 NALCNQ8IZF0 1738 aa23.44■■□□□ 1.34
AP3S1-208ENST00000515066 NKTRP30414 1462 aaKnown RBP23.44■■□□□ 1.34
AP3S1-208ENST00000515066 MINK1Q8N4C8 1332 aaPredicted RBP23.43■■□□□ 1.34
AP3S1-208ENST00000515066 SLC24A1O60721 1099 aa23.42■■□□□ 1.34
AP3S1-208ENST00000515066 XIRP1Q702N8 1843 aaKnown RBP23.39■■□□□ 1.33
AP3S1-208ENST00000515066 EVC2Q86UK5 1308 aa23.38■■□□□ 1.33
AP3S1-208ENST00000515066 DDX10Q13206 875 aaKnown RBP23.37■■□□□ 1.33
AP3S1-208ENST00000515066 DMRT2Q9Y5R5 561 aa23.37■■□□□ 1.33
AP3S1-208ENST00000515066 CDCA8Q53HL2 280 aa23.36■■□□□ 1.33
AP3S1-208ENST00000515066 POLR3GLQ9BT43 218 aa23.36■■□□□ 1.33
AP3S1-208ENST00000515066 ZNF335Q9H4Z2 1342 aaPredicted RBP23.34■■□□□ 1.33
AP3S1-208ENST00000515066 CDC42BPGQ6DT37 1551 aa23.34■■□□□ 1.33
AP3S1-208ENST00000515066 ADGRL3Q9HAR2 1447 aa23.33■■□□□ 1.33
AP3S1-208ENST00000515066 RBM33Q96EV2 1170 aaKnown RBP23.33■■□□□ 1.33
AP3S1-208ENST00000515066 PUS7Q96PZ0 661 aaKnown RBP23.33■■□□□ 1.33
AP3S1-208ENST00000515066 FMN2Q9NZ56 1722 aa23.33■■□□□ 1.32
AP3S1-208ENST00000515066 WASLO00401 505 aaPredicted RBP23.32■■□□□ 1.32
AP3S1-208ENST00000515066 CDK19Q9BWU1 502 aa23.32■■□□□ 1.32
AP3S1-208ENST00000515066 CABP2Q9NPB3 220 aa23.32■■□□□ 1.32
AP3S1-208ENST00000515066 USP32Q8NFA0 1604 aa23.32■■□□□ 1.32
AP3S1-208ENST00000515066 RGPD8O14715 1765 aaPredicted RBP23.32■■□□□ 1.32
AP3S1-208ENST00000515066 TOPAZ1Q8N9V7 1692 aa23.31■■□□□ 1.32
AP3S1-208ENST00000515066 ATP7BP35670 1465 aa23.3■■□□□ 1.32
AP3S1-208ENST00000515066 SRPK2P78362 688 aaKnown RBP23.29■■□□□ 1.32
AP3S1-208ENST00000515066 PROSER2Q86WR7 435 aaPredicted RBP23.29■■□□□ 1.32
AP3S1-208ENST00000515066 DIEXFQ68CQ4 756 aaKnown RBP23.28■■□□□ 1.32
AP3S1-208ENST00000515066 LRRC7Q96NW7 1537 aa23.28■■□□□ 1.32
AP3S1-208ENST00000515066 TMEM94Q12767 1356 aa23.28■■□□□ 1.32
AP3S1-208ENST00000515066 ATAD2Q6PL18 1390 aa23.28■■□□□ 1.32
AP3S1-208ENST00000515066 NCOA3Q9Y6Q9 1424 aa23.27■■□□□ 1.31
AP3S1-208ENST00000515066 ITSN1Q15811 1721 aa23.26■■□□□ 1.31
AP3S1-208ENST00000515066 PRR36Q9H6K5 1346 aa23.26■■□□□ 1.31
AP3S1-208ENST00000515066 LTBP4Q8N2S1 1624 aa23.24■■□□□ 1.31
AP3S1-208ENST00000515066 NINLQ9Y2I6 1382 aa23.22■■□□□ 1.31
AP3S1-208ENST00000515066 CD163L1Q9NR16 1453 aa23.22■■□□□ 1.31
AP3S1-208ENST00000515066 SLC12A5Q9H2X9 1139 aa23.22■■□□□ 1.31
AP3S1-208ENST00000515066 NUDT16Q96DE0 195 aaKnown RBP23.21■■□□□ 1.31
AP3S1-208ENST00000515066 ANKARQ7Z5J8 1434 aa23.2■■□□□ 1.31
AP3S1-208ENST00000515066 AKAP12Q02952 1782 aa23.2■■□□□ 1.3
AP3S1-208ENST00000515066 DCCP43146 1447 aa23.2■■□□□ 1.3
AP3S1-208ENST00000515066 PANK3Q9H999 370 aa23.19■■□□□ 1.3
AP3S1-208ENST00000515066 PPIP5K1Q6PFW1 1433 aa23.19■■□□□ 1.3
AP3S1-208ENST00000515066 C14orf37Q86TY3 774 aa23.19■■□□□ 1.3
AP3S1-208ENST00000515066 TMC1Q8TDI8 760 aa23.19■■□□□ 1.3
AP3S1-208ENST00000515066 NUTM2FA1L443 756 aa23.18■■□□□ 1.3
AP3S1-208ENST00000515066 PER1O15534 1290 aaPredicted RBP23.18■■□□□ 1.3
AP3S1-208ENST00000515066 C19orf44Q9H6X5 657 aa23.18■■□□□ 1.3
AP3S1-208ENST00000515066 CCDC61Q9Y6R9 512 aa23.18■■□□□ 1.3
AP3S1-208ENST00000515066 ANKRD36BQ8N2N9 1353 aa23.17■■□□□ 1.3
AP3S1-208ENST00000515066 MON2Q7Z3U7 1717 aa23.16■■□□□ 1.3
AP3S1-208ENST00000515066 CABP1Q9NZU7 370 aa23.16■■□□□ 1.3
AP3S1-208ENST00000515066 A0A1W2PP64 1363 aa23.16■■□□□ 1.3
AP3S1-208ENST00000515066 CPSF1Q10570 1443 aaKnown RBP23.14■■□□□ 1.29
AP3S1-208ENST00000515066 CARD14Q9BXL6 1004 aa23.13■■□□□ 1.29
AP3S1-208ENST00000515066 MSH6P52701 1360 aa23.13■■□□□ 1.29
AP3S1-208ENST00000515066 MST1RQ04912 1400 aa23.12■■□□□ 1.29
AP3S1-208ENST00000515066 NRKQ7Z2Y5 1582 aa23.11■■□□□ 1.29
AP3S1-208ENST00000515066 C1orf167Q5SNV9 1468 aa23.1■■□□□ 1.29
AP3S1-208ENST00000515066 PLEKHG3A1L390 1219 aa23.09■■□□□ 1.29
AP3S1-208ENST00000515066 NSD3Q9BZ95 1437 aa23.09■■□□□ 1.29
AP3S1-208ENST00000515066 POLR3AO14802 1390 aaPredicted RBP23.08■■□□□ 1.29
AP3S1-208ENST00000515066 TERF2IPQ9NYB0 399 aa23.08■■□□□ 1.29
AP3S1-208ENST00000515066 ATF3P18847 181 aa23.07■■□□□ 1.28
AP3S1-208ENST00000515066 KIF1AQ12756 1690 aa23.07■■□□□ 1.28
AP3S1-208ENST00000515066 CADPS2Q86UW7 1296 aa23.06■■□□□ 1.28
AP3S1-208ENST00000515066 KIF20BQ96Q89 1820 aa23.06■■□□□ 1.28
AP3S1-208ENST00000515066 ACEP12821 1306 aa23.06■■□□□ 1.28
AP3S1-208ENST00000515066 AMER1Q5JTC6 1135 aaPredicted RBP23.06■■□□□ 1.28
AP3S1-208ENST00000515066 HDGFL2Q7Z4V5 671 aaPredicted RBP23.04■■□□□ 1.28
AP3S1-208ENST00000515066 PMFBP1Q8TBY8 1022 aa23.04■■□□□ 1.28
AP3S1-208ENST00000515066 KNSTRNQ9Y448 316 aa23.04■■□□□ 1.28
AP3S1-208ENST00000515066 KTN1Q86UP2 1357 aaKnown RBP23.04■■□□□ 1.28
AP3S1-208ENST00000515066 ANKRD26Q9UPS8 1709 aa23.03■■□□□ 1.28
AP3S1-208ENST00000515066 NPC1L1Q9UHC9 1359 aa23.03■■□□□ 1.28
AP3S1-208ENST00000515066 USP6P35125 1406 aa23.03■■□□□ 1.28
AP3S1-208ENST00000515066 EDC4Q6P2E9 1401 aaKnown RBP23.03■■□□□ 1.28
AP3S1-208ENST00000515066 MIER1Q8N108 512 aa23.03■■□□□ 1.28
AP3S1-208ENST00000515066 ORAI2Q96SN7 254 aa23.03■■□□□ 1.28
AP3S1-208ENST00000515066 PHF8Q9UPP1 1060 aa23.02■■□□□ 1.28
AP3S1-208ENST00000515066 ESCO1Q5FWF5 840 aa23.01■■□□□ 1.27
AP3S1-208ENST00000515066 PRKRIP1Q9H875 184 aaPredicted RBP23.01■■□□□ 1.27
AP3S1-208ENST00000515066 SSH2Q76I76 1423 aa23.01■■□□□ 1.27
AP3S1-208ENST00000515066 ANP32CO43423 234 aa23■■□□□ 1.27
AP3S1-208ENST00000515066 ZNF692Q9BU19 519 aaPredicted RBP23■■□□□ 1.27
AP3S1-208ENST00000515066 PARD3Q8TEW0 1356 aa22.98■■□□□ 1.27
AP3S1-208ENST00000515066 CC2D1BQ5T0F9 858 aaKnown RBP22.98■■□□□ 1.27
AP3S1-208ENST00000515066 NGDNQ8NEJ9 315 aaKnown RBP22.98■■□□□ 1.27
AP3S1-208ENST00000515066 CGNL1Q0VF96 1302 aa22.98■■□□□ 1.27
AP3S1-208ENST00000515066 TRPM3Q9HCF6 1732 aaPredicted RBP22.97■■□□□ 1.27
AP3S1-208ENST00000515066 CNGB1Q14028 1251 aaPredicted RBP22.96■■□□□ 1.27
AP3S1-208ENST00000515066 PIK3C2AO00443 1686 aa22.95■■□□□ 1.26
AP3S1-208ENST00000515066 SLAIN2Q9P270 581 aa22.95■■□□□ 1.26
AP3S1-208ENST00000515066 NSD2O96028 1365 aa22.94■■□□□ 1.26
AP3S1-208ENST00000515066 MARF1Q9Y4F3 1742 aaKnown RBP22.94■■□□□ 1.26
AP3S1-208ENST00000515066 FYB1O15117 783 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms