RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 TET3O43151 1660 aa13.01□□□□□ -0.33
USP53-207ENST00000510852 NEUROD1Q13562 356 aa13□□□□□ -0.33
USP53-207ENST00000510852 GLIPR1L2Q4G1C9 344 aa13□□□□□ -0.33
USP53-207ENST00000510852 GPBP1L1Q9HC44 474 aaPredicted RBP13□□□□□ -0.33
USP53-207ENST00000510852 CEP152O94986 1710 aa13□□□□□ -0.33
USP53-207ENST00000510852 EFCAB6Q5THR3 1501 aa12.99□□□□□ -0.33
USP53-207ENST00000510852 HSP90AB4PQ58FF6 505 aa12.99□□□□□ -0.33
USP53-207ENST00000510852 IPO4Q8TEX9 1081 aaKnown RBP12.99□□□□□ -0.33
USP53-207ENST00000510852 E9PCH4 1651 aa12.98□□□□□ -0.33
USP53-207ENST00000510852 WDR70Q9NW82 654 aa12.98□□□□□ -0.33
USP53-207ENST00000510852 PLA2R1Q13018 1463 aa12.98□□□□□ -0.33
USP53-207ENST00000510852 NPATQ14207 1427 aa12.98□□□□□ -0.33
USP53-207ENST00000510852 ZC3H13Q5T200 1668 aaKnown RBP12.98□□□□□ -0.33
USP53-207ENST00000510852 ESF1Q9H501 851 aaKnown RBP12.98□□□□□ -0.33
USP53-207ENST00000510852 RETREG2Q8NC44 543 aa12.97□□□□□ -0.33
USP53-207ENST00000510852 CAMSAP1Q5T5Y3 1602 aa12.97□□□□□ -0.33
USP53-207ENST00000510852 ARHGAP31Q2M1Z3 1444 aa12.97□□□□□ -0.33
USP53-207ENST00000510852 RPRD2Q5VT52 1461 aaKnown RBP12.96□□□□□ -0.33
USP53-207ENST00000510852 PTPRTO14522 1441 aa12.96□□□□□ -0.33
USP53-207ENST00000510852 NOL8Q76FK4 1167 aaKnown RBP12.96□□□□□ -0.33
USP53-207ENST00000510852 LAS1LQ9Y4W2 734 aaKnown RBP12.95□□□□□ -0.34
USP53-207ENST00000510852 OS9Q13438 667 aaPredicted RBP12.94□□□□□ -0.34
USP53-207ENST00000510852 CLTCQ00610 1675 aaKnown RBP12.94□□□□□ -0.34
USP53-207ENST00000510852 TMTC2Q8N394 836 aa12.94□□□□□ -0.34
USP53-207ENST00000510852 CCDC144AA2RUR9 1427 aa12.94□□□□□ -0.34
USP53-207ENST00000510852 SGSM3Q96HU1 749 aa12.93□□□□□ -0.34
USP53-207ENST00000510852 CNTLNQ9NXG0 1405 aa12.93□□□□□ -0.34
USP53-207ENST00000510852 ZMYM3Q14202 1370 aa12.93□□□□□ -0.34
USP53-207ENST00000510852 TRPM2O94759 1503 aa12.92□□□□□ -0.34
USP53-207ENST00000510852 FBXO31Q5XUX0 539 aaPredicted RBP12.92□□□□□ -0.34
USP53-207ENST00000510852 BARGINQ6ZT62 677 aa12.92□□□□□ -0.34
USP53-207ENST00000510852 NOS1P29475 1434 aa12.91□□□□□ -0.34
USP53-207ENST00000510852 TONSLQ96HA7 1378 aa12.91□□□□□ -0.34
USP53-207ENST00000510852 SPHKAPQ2M3C7 1700 aa12.91□□□□□ -0.34
USP53-207ENST00000510852 PTMAP06454 111 aaKnown RBP12.9□□□□□ -0.34
USP53-207ENST00000510852 CLUAP1Q96AJ1 413 aa12.89□□□□□ -0.35
USP53-207ENST00000510852 ERVK-7P63135 1459 aa12.89□□□□□ -0.35
USP53-207ENST00000510852 UNCXA6NJT0 531 aa12.89□□□□□ -0.35
USP53-207ENST00000510852 ANKRD13AQ8IZ07 590 aa12.89□□□□□ -0.35
USP53-207ENST00000510852 SPATA32Q96LK8 384 aa12.89□□□□□ -0.35
USP53-207ENST00000510852 UGGT1Q9NYU2 1555 aa12.88□□□□□ -0.35
USP53-207ENST00000510852 NEFMP07197 916 aa12.88□□□□□ -0.35
USP53-207ENST00000510852 FAM9BQ8IZU0 186 aa12.88□□□□□ -0.35
USP53-207ENST00000510852 IGSF5Q9NSI5 407 aa12.88□□□□□ -0.35
USP53-207ENST00000510852 FER1L4A9Z1Z3 1794 aa12.88□□□□□ -0.35
USP53-207ENST00000510852 CFAP65Q6ZU64 1925 aaKnown RBP12.88□□□□□ -0.35
USP53-207ENST00000510852 CEBPAP49715 358 aaPredicted RBP12.88□□□□□ -0.35
USP53-207ENST00000510852 L3MBTL2Q969R5 705 aa12.88□□□□□ -0.35
USP53-207ENST00000510852 CLTCL1P53675 1640 aa12.88□□□□□ -0.35
USP53-207ENST00000510852 MROH2AA6NES4 1674 aa12.87□□□□□ -0.35
USP53-207ENST00000510852 SYNMO15061 1565 aa12.87□□□□□ -0.35
USP53-207ENST00000510852 TRAK2O60296 914 aa12.87□□□□□ -0.35
USP53-207ENST00000510852 FTSJ3Q8IY81 847 aaKnown RBP12.87□□□□□ -0.35
USP53-207ENST00000510852 PREX1Q8TCU6 1659 aa12.87□□□□□ -0.35
USP53-207ENST00000510852 MADDQ8WXG6 1647 aa12.87□□□□□ -0.35
USP53-207ENST00000510852 CHMP4BQ9H444 224 aaKnown RBP12.87□□□□□ -0.35
USP53-207ENST00000510852 ADAMTSL3P82987 1691 aa12.87□□□□□ -0.35
USP53-207ENST00000510852 SLC52A1Q9NWF4 448 aa12.86□□□□□ -0.35
USP53-207ENST00000510852 SPATA31D1Q6ZQQ2 1576 aa12.86□□□□□ -0.35
USP53-207ENST00000510852 MARCH6O60337 910 aa12.86□□□□□ -0.35
USP53-207ENST00000510852 RGL3Q3MIN7 710 aa12.86□□□□□ -0.35
USP53-207ENST00000510852 SLC4A2P04920 1241 aa12.85□□□□□ -0.35
USP53-207ENST00000510852 IDI1Q13907 227 aa12.85□□□□□ -0.35
USP53-207ENST00000510852 FOXD4L6Q3SYB3 417 aaPredicted RBP12.85□□□□□ -0.35
USP53-207ENST00000510852 FOXD4L3Q6VB84 417 aaPredicted RBP12.85□□□□□ -0.35
USP53-207ENST00000510852 SPATA31E1Q6ZUB1 1445 aa12.85□□□□□ -0.35
USP53-207ENST00000510852 CANXP27824 592 aaKnown RBP12.84□□□□□ -0.35
USP53-207ENST00000510852 PPP1R15AO75807 674 aaPredicted RBP12.84□□□□□ -0.35
USP53-207ENST00000510852 SPTY2D1Q68D10 685 aaPredicted RBP12.83□□□□□ -0.35
USP53-207ENST00000510852 AMOTL2Q9Y2J4 779 aa12.83□□□□□ -0.35
USP53-207ENST00000510852 TNRQ92752 1358 aa12.83□□□□□ -0.36
USP53-207ENST00000510852 RIMS1Q86UR5 1692 aaKnown RBP12.83□□□□□ -0.36
USP53-207ENST00000510852 PIK3C2BO00750 1634 aa12.83□□□□□ -0.36
USP53-207ENST00000510852 C3P01024 1663 aa12.83□□□□□ -0.36
USP53-207ENST00000510852 KCNV2Q8TDN2 545 aa12.81□□□□□ -0.36
USP53-207ENST00000510852 DCAF11Q8TEB1 546 aa12.81□□□□□ -0.36
USP53-207ENST00000510852 MYH16Q9H6N6 1097 aa12.81□□□□□ -0.36
USP53-207ENST00000510852 HS6ST3Q8IZP7 471 aa12.81□□□□□ -0.36
USP53-207ENST00000510852 NEURL4Q96JN8 1562 aa12.8□□□□□ -0.36
USP53-207ENST00000510852 ADGRB3O60242 1522 aa12.8□□□□□ -0.36
USP53-207ENST00000510852 PPME1Q9Y570 386 aa12.8□□□□□ -0.36
USP53-207ENST00000510852 NKX1-1Q15270 411 aaPredicted RBP12.79□□□□□ -0.36
USP53-207ENST00000510852 KIF1BO60333 1816 aa12.79□□□□□ -0.36
USP53-207ENST00000510852 PTPRMP28827 1452 aa12.78□□□□□ -0.36
USP53-207ENST00000510852 STAG3Q9UJ98 1225 aa12.78□□□□□ -0.36
USP53-207ENST00000510852 TPD52L2O43399 206 aaKnown RBP12.78□□□□□ -0.36
USP53-207ENST00000510852 FAM193AP78312 1265 aa12.78□□□□□ -0.36
USP53-207ENST00000510852 POTEDQ86YR6 584 aa12.78□□□□□ -0.36
USP53-207ENST00000510852 KDM4FA0A1W2PPD8 638 aa12.77□□□□□ -0.37
USP53-207ENST00000510852 NBPF8Q3BBV2 869 aa12.77□□□□□ -0.37
USP53-207ENST00000510852 NLRP1Q9C000 1473 aa12.77□□□□□ -0.37
USP53-207ENST00000510852 SIRT1Q96EB6 747 aa12.77□□□□□ -0.37
USP53-207ENST00000510852 ZC3H4Q9UPT8 1303 aaKnown RBP12.76□□□□□ -0.37
USP53-207ENST00000510852 TMEM131LA2VDJ0 1609 aa12.76□□□□□ -0.37
USP53-207ENST00000510852 RPGRIP1LQ68CZ1 1315 aa12.76□□□□□ -0.37
USP53-207ENST00000510852 RBM27Q9P2N5 1060 aaKnown RBP12.76□□□□□ -0.37
USP53-207ENST00000510852 SUGT1Q9Y2Z0 365 aa12.76□□□□□ -0.37
USP53-207ENST00000510852 UHRF1BP1Q6BDS2 1440 aa12.75□□□□□ -0.37
USP53-207ENST00000510852 A2ML1A8K2U0 1454 aa12.75□□□□□ -0.37
USP53-207ENST00000510852 PROM2Q8N271 834 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms