RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 RGS12O14924 1447 aa24.6■■□□□ 1.53
SYNE4-207ENST00000505054 ROBO2Q9HCK4 1378 aa24.59■■□□□ 1.53
SYNE4-207ENST00000505054 VGFO15240 615 aaPredicted RBP24.58■■□□□ 1.53
SYNE4-207ENST00000505054 C8orf37Q96NL8 207 aa24.57■■□□□ 1.52
SYNE4-207ENST00000505054 COL22A1Q8NFW1 1626 aaPredicted RBP24.57■■□□□ 1.52
SYNE4-207ENST00000505054 CDC42BPGQ6DT37 1551 aa24.56■■□□□ 1.52
SYNE4-207ENST00000505054 ADGRF5Q8IZF2 1346 aa24.55■■□□□ 1.52
SYNE4-207ENST00000505054 RBM6P78332 1123 aaKnown RBP24.53■■□□□ 1.52
SYNE4-207ENST00000505054 SOS2Q07890 1332 aaPredicted RBP24.53■■□□□ 1.52
SYNE4-207ENST00000505054 MYOM2P54296 1465 aa24.52■■□□□ 1.52
SYNE4-207ENST00000505054 NRXN1Q9ULB1 1477 aa24.51■■□□□ 1.51
SYNE4-207ENST00000505054 SIN3AQ96ST3 1273 aa24.5■■□□□ 1.51
SYNE4-207ENST00000505054 QTRT2Q9H974 415 aaKnown RBP24.5■■□□□ 1.51
SYNE4-207ENST00000505054 PIK3C2GO75747 1445 aa24.5■■□□□ 1.51
SYNE4-207ENST00000505054 ORAI2Q96SN7 254 aa24.49■■□□□ 1.51
SYNE4-207ENST00000505054 MARF1Q9Y4F3 1742 aaKnown RBP24.49■■□□□ 1.51
SYNE4-207ENST00000505054 KNDC1Q76NI1 1749 aa24.48■■□□□ 1.51
SYNE4-207ENST00000505054 ADAMTS2O95450 1211 aa24.47■■□□□ 1.51
SYNE4-207ENST00000505054 NGLY1Q96IV0 654 aa24.47■■□□□ 1.51
SYNE4-207ENST00000505054 DCAF11Q8TEB1 546 aa24.44■■□□□ 1.5
SYNE4-207ENST00000505054 PXDNQ92626 1479 aa24.44■■□□□ 1.5
SYNE4-207ENST00000505054 TECPR2O15040 1411 aa24.44■■□□□ 1.5
SYNE4-207ENST00000505054 NEUROD1Q13562 356 aa24.42■■□□□ 1.5
SYNE4-207ENST00000505054 NPHP3Q7Z494 1330 aa24.41■■□□□ 1.5
SYNE4-207ENST00000505054 KDM2AQ9Y2K7 1162 aa24.41■■□□□ 1.5
SYNE4-207ENST00000505054 ATRNO75882 1429 aa24.41■■□□□ 1.5
SYNE4-207ENST00000505054 ATAD2Q6PL18 1390 aa24.41■■□□□ 1.5
SYNE4-207ENST00000505054 USP21Q9UK80 565 aa24.4■■□□□ 1.5
SYNE4-207ENST00000505054 FMN2Q9NZ56 1722 aa24.4■■□□□ 1.5
SYNE4-207ENST00000505054 FNBP4Q8N3X1 1017 aaPredicted RBP24.39■■□□□ 1.49
SYNE4-207ENST00000505054 TRPC5Q9UL62 973 aaPredicted RBP24.39■■□□□ 1.49
SYNE4-207ENST00000505054 KIF1AQ12756 1690 aa24.39■■□□□ 1.49
SYNE4-207ENST00000505054 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.38■■□□□ 1.49
SYNE4-207ENST00000505054 STAC3Q96MF2 364 aa24.38■■□□□ 1.49
SYNE4-207ENST00000505054 ESCO1Q5FWF5 840 aa24.37■■□□□ 1.49
SYNE4-207ENST00000505054 L3MBTL2Q969R5 705 aa24.37■■□□□ 1.49
SYNE4-207ENST00000505054 C14orf93Q9H972 538 aaKnown RBP24.37■■□□□ 1.49
SYNE4-207ENST00000505054 CFAP70Q5T0N1 1121 aa24.36■■□□□ 1.49
SYNE4-207ENST00000505054 LRPPRCP42704 1394 aaKnown RBP24.36■■□□□ 1.49
SYNE4-207ENST00000505054 TMEM132EQ6IEE7 984 aa24.32■■□□□ 1.48
SYNE4-207ENST00000505054 BCL9LQ86UU0 1499 aa24.32■■□□□ 1.48
SYNE4-207ENST00000505054 ABCC11Q96J66 1382 aa24.31■■□□□ 1.48
SYNE4-207ENST00000505054 ADGRB1O14514 1584 aa24.31■■□□□ 1.48
SYNE4-207ENST00000505054 EP400Q96L91 3159 aa24.3■■□□□ 1.48
SYNE4-207ENST00000505054 USP32Q8NFA0 1604 aa24.29■■□□□ 1.48
SYNE4-207ENST00000505054 FOXO3O43524 673 aa24.29■■□□□ 1.48
SYNE4-207ENST00000505054 STK26Q9P289 416 aa24.29■■□□□ 1.48
SYNE4-207ENST00000505054 CLSPNQ9HAW4 1339 aa24.29■■□□□ 1.48
SYNE4-207ENST00000505054 YTHDC2Q9H6S0 1430 aaKnown RBP24.28■■□□□ 1.48
SYNE4-207ENST00000505054 XPCQ01831 940 aaPredicted RBP24.28■■□□□ 1.48
SYNE4-207ENST00000505054 WAPLQ7Z5K2 1190 aa24.28■■□□□ 1.48
SYNE4-207ENST00000505054 PLEKHH1Q9ULM0 1364 aa24.28■■□□□ 1.48
SYNE4-207ENST00000505054 TONSLQ96HA7 1378 aa24.27■■□□□ 1.48
SYNE4-207ENST00000505054 RGPD8O14715 1765 aaPredicted RBP24.26■■□□□ 1.47
SYNE4-207ENST00000505054 NUTM2FA1L443 756 aa24.25■■□□□ 1.47
SYNE4-207ENST00000505054 CCER1Q8TC90 406 aaPredicted RBP24.24■■□□□ 1.47
SYNE4-207ENST00000505054 SLIT2O94813 1529 aa24.24■■□□□ 1.47
SYNE4-207ENST00000505054 GLI3P10071 1580 aa24.24■■□□□ 1.47
SYNE4-207ENST00000505054 ABCA3Q99758 1704 aa24.24■■□□□ 1.47
SYNE4-207ENST00000505054 KIAA1210Q9ULL0 1709 aa24.23■■□□□ 1.47
SYNE4-207ENST00000505054 SPATA31A3Q5VYP0 1347 aa24.22■■□□□ 1.47
SYNE4-207ENST00000505054 PLCH1Q4KWH8 1693 aa24.21■■□□□ 1.47
SYNE4-207ENST00000505054 GJD4Q96KN9 370 aaPredicted RBP24.21■■□□□ 1.47
SYNE4-207ENST00000505054 RALGAPBQ86X10 1494 aa24.2■■□□□ 1.47
SYNE4-207ENST00000505054 TNS3Q68CZ2 1445 aa24.2■■□□□ 1.46
SYNE4-207ENST00000505054 NWD2Q9ULI1 1742 aa24.2■■□□□ 1.46
SYNE4-207ENST00000505054 BRWD3Q6RI45 1802 aa24.19■■□□□ 1.46
SYNE4-207ENST00000505054 NBPF8Q3BBV2 869 aa24.18■■□□□ 1.46
SYNE4-207ENST00000505054 CCDC125Q86Z20 511 aa24.18■■□□□ 1.46
SYNE4-207ENST00000505054 SIRT1Q96EB6 747 aa24.18■■□□□ 1.46
SYNE4-207ENST00000505054 DLC1Q96QB1 1528 aa24.18■■□□□ 1.46
SYNE4-207ENST00000505054 TRPM1Q7Z4N2 1603 aa24.17■■□□□ 1.46
SYNE4-207ENST00000505054 NBPF1Q3BBV0 1214 aa24.17■■□□□ 1.46
SYNE4-207ENST00000505054 UNC5CLQ8IV45 518 aa24.17■■□□□ 1.46
SYNE4-207ENST00000505054 SRCAPQ6ZRS2 3230 aa24.17■■□□□ 1.46
SYNE4-207ENST00000505054 ADGRB2O60241 1585 aa24.16■■□□□ 1.46
SYNE4-207ENST00000505054 KRT28Q7Z3Y7 464 aa24.15■■□□□ 1.46
SYNE4-207ENST00000505054 ZRANB1Q9UGI0 708 aa24.15■■□□□ 1.46
SYNE4-207ENST00000505054 TRAK1Q9UPV9 953 aa24.13■■□□□ 1.45
SYNE4-207ENST00000505054 PHF8Q9UPP1 1060 aa24.12■■□□□ 1.45
SYNE4-207ENST00000505054 SBNO1A3KN83 1393 aa24.12■■□□□ 1.45
SYNE4-207ENST00000505054 BLMP54132 1417 aaPredicted RBP24.11■■□□□ 1.45
SYNE4-207ENST00000505054 ANKARQ7Z5J8 1434 aa24.11■■□□□ 1.45
SYNE4-207ENST00000505054 PRAM1Q96QH2 718 aa24.11■■□□□ 1.45
SYNE4-207ENST00000505054 HAP1P54257 671 aaPredicted RBP24.1■■□□□ 1.45
SYNE4-207ENST00000505054 PSME1Q06323 249 aa24.1■■□□□ 1.45
SYNE4-207ENST00000505054 ARHGEF10O15013 1369 aa24.1■■□□□ 1.45
SYNE4-207ENST00000505054 ARHGEF28Q8N1W1 1705 aaKnown RBP24.1■■□□□ 1.45
SYNE4-207ENST00000505054 TRPM3Q9HCF6 1732 aaPredicted RBP24.1■■□□□ 1.45
SYNE4-207ENST00000505054 ROCK2O75116 1388 aaKnown RBP24.08■■□□□ 1.45
SYNE4-207ENST00000505054 NRAPQ86VF7 1730 aa24.08■■□□□ 1.45
SYNE4-207ENST00000505054 TIMELESSQ9UNS1 1208 aa24.08■■□□□ 1.45
SYNE4-207ENST00000505054 GPRASP1Q5JY77 1395 aa24.07■■□□□ 1.44
SYNE4-207ENST00000505054 ALS2Q96Q42 1657 aa24.06■■□□□ 1.44
SYNE4-207ENST00000505054 SAFB2Q14151 953 aaKnown RBP eCLIP24.06■■□□□ 1.44
SYNE4-207ENST00000505054 VPS72Q15906 364 aa24.05■■□□□ 1.44
SYNE4-207ENST00000505054 POGKQ9P215 609 aa24.05■■□□□ 1.44
SYNE4-207ENST00000505054 CABLES1Q8TDN4 633 aa24.03■■□□□ 1.44
SYNE4-207ENST00000505054 COL14A1Q05707 1796 aaKnown RBP24.02■■□□□ 1.44
SYNE4-207ENST00000505054 EIF3AQ14152 1382 aaKnown RBP24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms