RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 ADGRB1O14514 1584 aa22.9■■□□□ 1.26
LIME1-209ENST00000494776 ILDR2Q71H61 639 aa22.89■■□□□ 1.25
LIME1-209ENST00000494776 BRINP3Q76B58 766 aa22.89■■□□□ 1.25
LIME1-209ENST00000494776 TONSLQ96HA7 1378 aa22.89■■□□□ 1.25
LIME1-209ENST00000494776 DLC1Q96QB1 1528 aa22.86■■□□□ 1.25
LIME1-209ENST00000494776 NBPF1Q3BBV0 1214 aa22.85■■□□□ 1.25
LIME1-209ENST00000494776 PHF23Q9BUL5 403 aaPredicted RBP22.85■■□□□ 1.25
LIME1-209ENST00000494776 C1orf167Q5SNV9 1468 aa22.85■■□□□ 1.25
LIME1-209ENST00000494776 NUTM2FA1L443 756 aa22.84■■□□□ 1.25
LIME1-209ENST00000494776 KIAA1210Q9ULL0 1709 aa22.84■■□□□ 1.25
LIME1-209ENST00000494776 CDC42BPGQ6DT37 1551 aa22.84■■□□□ 1.25
LIME1-209ENST00000494776 PHLPP1O60346 1717 aa22.83■■□□□ 1.25
LIME1-209ENST00000494776 SOCS7O14512 581 aa22.83■■□□□ 1.25
LIME1-209ENST00000494776 MED1Q15648 1581 aaPredicted RBP22.83■■□□□ 1.25
LIME1-209ENST00000494776 ESCO1Q5FWF5 840 aa22.82■■□□□ 1.24
LIME1-209ENST00000494776 ORAI2Q96SN7 254 aa22.81■■□□□ 1.24
LIME1-209ENST00000494776 MINK1Q8N4C8 1332 aaPredicted RBP22.8■■□□□ 1.24
LIME1-209ENST00000494776 HIRIP3Q9BW71 556 aaPredicted RBP22.79■■□□□ 1.24
LIME1-209ENST00000494776 AHDC1Q5TGY3 1603 aaPredicted RBP22.78■■□□□ 1.24
LIME1-209ENST00000494776 DDX17Q92841 729 aaKnown RBP22.77■■□□□ 1.24
LIME1-209ENST00000494776 ROCK2O75116 1388 aaKnown RBP22.76■■□□□ 1.23
LIME1-209ENST00000494776 JCADQ9P266 1359 aa22.76■■□□□ 1.23
LIME1-209ENST00000494776 NBPF8Q3BBV2 869 aa22.75■■□□□ 1.23
LIME1-209ENST00000494776 CCER1Q8TC90 406 aaPredicted RBP22.75■■□□□ 1.23
LIME1-209ENST00000494776 COL16A1Q07092 1604 aaPredicted RBP22.75■■□□□ 1.23
LIME1-209ENST00000494776 CLSPNQ9HAW4 1339 aa22.74■■□□□ 1.23
LIME1-209ENST00000494776 ARHGEF28Q8N1W1 1705 aaKnown RBP22.74■■□□□ 1.23
LIME1-209ENST00000494776 FMN2Q9NZ56 1722 aa22.74■■□□□ 1.23
LIME1-209ENST00000494776 TRPM1Q7Z4N2 1603 aa22.73■■□□□ 1.23
LIME1-209ENST00000494776 LRRC59Q96AG4 307 aaKnown RBP22.72■■□□□ 1.23
LIME1-209ENST00000494776 NHSL1Q5SYE7 1610 aa22.71■■□□□ 1.23
LIME1-209ENST00000494776 WASLO00401 505 aaPredicted RBP22.71■■□□□ 1.23
LIME1-209ENST00000494776 NPHP3Q7Z494 1330 aa22.71■■□□□ 1.23
LIME1-209ENST00000494776 FOXO3O43524 673 aa22.7■■□□□ 1.22
LIME1-209ENST00000494776 CENPJQ9HC77 1338 aaPredicted RBP22.7■■□□□ 1.22
LIME1-209ENST00000494776 EIF3AQ14152 1382 aaKnown RBP22.7■■□□□ 1.22
LIME1-209ENST00000494776 ADGRB2O60241 1585 aa22.7■■□□□ 1.22
LIME1-209ENST00000494776 PHF8Q9UPP1 1060 aa22.68■■□□□ 1.22
LIME1-209ENST00000494776 CARD11Q9BXL7 1154 aa22.67■■□□□ 1.22
LIME1-209ENST00000494776 ANKARQ7Z5J8 1434 aa22.66■■□□□ 1.22
LIME1-209ENST00000494776 SOS2Q07890 1332 aaPredicted RBP22.66■■□□□ 1.22
LIME1-209ENST00000494776 XPCQ01831 940 aaPredicted RBP22.66■■□□□ 1.22
LIME1-209ENST00000494776 SPATA31A6Q5VVP1 1343 aa22.65■■□□□ 1.22
LIME1-209ENST00000494776 CDK19Q9BWU1 502 aa22.65■■□□□ 1.22
LIME1-209ENST00000494776 PMFBP1Q8TBY8 1022 aa22.64■■□□□ 1.21
LIME1-209ENST00000494776 TULP4Q9NRJ4 1543 aa22.63■■□□□ 1.21
LIME1-209ENST00000494776 KIF1AQ12756 1690 aa22.63■■□□□ 1.21
LIME1-209ENST00000494776 NUTM2BA6NNL0 878 aaPredicted RBP22.63■■□□□ 1.21
LIME1-209ENST00000494776 NUTM2EB1AL46 878 aaPredicted RBP22.63■■□□□ 1.21
LIME1-209ENST00000494776 NUTM2AQ8IVF1 878 aaPredicted RBP22.63■■□□□ 1.21
LIME1-209ENST00000494776 TIMELESSQ9UNS1 1208 aa22.63■■□□□ 1.21
LIME1-209ENST00000494776 RGPD8O14715 1765 aaPredicted RBP22.63■■□□□ 1.21
LIME1-209ENST00000494776 GPRASP1Q5JY77 1395 aa22.63■■□□□ 1.21
LIME1-209ENST00000494776 RALGAPBQ86X10 1494 aa22.62■■□□□ 1.21
LIME1-209ENST00000494776 MEX3CQ5U5Q3 659 aaKnown RBP22.62■■□□□ 1.21
LIME1-209ENST00000494776 SHPRHQ149N8 1683 aa22.62■■□□□ 1.21
LIME1-209ENST00000494776 PRR36Q9H6K5 1346 aa22.61■■□□□ 1.21
LIME1-209ENST00000494776 SRPK2P78362 688 aaKnown RBP22.61■■□□□ 1.21
LIME1-209ENST00000494776 PSME1Q06323 249 aa22.61■■□□□ 1.21
LIME1-209ENST00000494776 KRT28Q7Z3Y7 464 aa22.61■■□□□ 1.21
LIME1-209ENST00000494776 NUDT16Q96DE0 195 aaKnown RBP22.61■■□□□ 1.21
LIME1-209ENST00000494776 USP32Q8NFA0 1604 aa22.6■■□□□ 1.21
LIME1-209ENST00000494776 PNPLA6Q8IY17 1366 aa22.59■■□□□ 1.21
LIME1-209ENST00000494776 QRICH2Q9H0J4 1663 aa22.58■■□□□ 1.21
LIME1-209ENST00000494776 NGDNQ8NEJ9 315 aaKnown RBP22.58■■□□□ 1.21
LIME1-209ENST00000494776 PXDNQ92626 1479 aa22.58■■□□□ 1.2
LIME1-209ENST00000494776 CABP2Q9NPB3 220 aa22.56■■□□□ 1.2
LIME1-209ENST00000494776 EVC2Q86UK5 1308 aa22.56■■□□□ 1.2
LIME1-209ENST00000494776 CCDC61Q9Y6R9 512 aa22.55■■□□□ 1.2
LIME1-209ENST00000494776 ATP7BP35670 1465 aa22.54■■□□□ 1.2
LIME1-209ENST00000494776 LMOD2Q6P5Q4 547 aa22.54■■□□□ 1.2
LIME1-209ENST00000494776 LRP6O75581 1613 aa22.53■■□□□ 1.2
LIME1-209ENST00000494776 SPATA31A3Q5VYP0 1347 aa22.53■■□□□ 1.2
LIME1-209ENST00000494776 ITSN1Q15811 1721 aa22.51■■□□□ 1.19
LIME1-209ENST00000494776 ADAMTS2O95450 1211 aa22.5■■□□□ 1.19
LIME1-209ENST00000494776 RGS17Q9UGC6 210 aaPredicted RBP22.5■■□□□ 1.19
LIME1-209ENST00000494776 SBNO1A3KN83 1393 aa22.5■■□□□ 1.19
LIME1-209ENST00000494776 PAK3O75914 559 aaPredicted RBP22.49■■□□□ 1.19
LIME1-209ENST00000494776 TNS3Q68CZ2 1445 aa22.48■■□□□ 1.19
LIME1-209ENST00000494776 PLEKHG5O94827 1062 aa22.48■■□□□ 1.19
LIME1-209ENST00000494776 ACEP12821 1306 aa22.48■■□□□ 1.19
LIME1-209ENST00000494776 PPIP5K1Q6PFW1 1433 aa22.48■■□□□ 1.19
LIME1-209ENST00000494776 PLEKHG3A1L390 1219 aa22.47■■□□□ 1.19
LIME1-209ENST00000494776 HAP1P54257 671 aaPredicted RBP22.47■■□□□ 1.19
LIME1-209ENST00000494776 C8orf37Q96NL8 207 aa22.47■■□□□ 1.19
LIME1-209ENST00000494776 ARHGEF10O15013 1369 aa22.46■■□□□ 1.19
LIME1-209ENST00000494776 ST20-MTHFSA0A0A6YYL1 179 aa22.45■■□□□ 1.18
LIME1-209ENST00000494776 CABP1Q9NZU7 370 aa22.45■■□□□ 1.18
LIME1-209ENST00000494776 SBNO2Q9Y2G9 1366 aa22.45■■□□□ 1.18
LIME1-209ENST00000494776 COL22A1Q8NFW1 1626 aaPredicted RBP22.45■■□□□ 1.18
LIME1-209ENST00000494776 TOPAZ1Q8N9V7 1692 aa22.44■■□□□ 1.18
LIME1-209ENST00000494776 NGLY1Q96IV0 654 aa22.44■■□□□ 1.18
LIME1-209ENST00000494776 POLR3AO14802 1390 aaPredicted RBP22.43■■□□□ 1.18
LIME1-209ENST00000494776 ZNF772Q68DY9 489 aaPredicted RBP22.43■■□□□ 1.18
LIME1-209ENST00000494776 USP47Q96K76 1375 aa22.42■■□□□ 1.18
LIME1-209ENST00000494776 ATAD2Q6PL18 1390 aa22.41■■□□□ 1.18
LIME1-209ENST00000494776 AFF2P51816 1311 aa22.41■■□□□ 1.18
LIME1-209ENST00000494776 SLC24A1O60721 1099 aa22.41■■□□□ 1.18
LIME1-209ENST00000494776 POTEAQ6S8J7 498 aa22.41■■□□□ 1.18
LIME1-209ENST00000494776 CABLES1Q8TDN4 633 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms