RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 KNDC1Q76NI1 1749 aa16.79■□□□□ 0.28
CTSA-209ENST00000493522 NEUROD1Q13562 356 aa16.78■□□□□ 0.28
CTSA-209ENST00000493522 PNPLA6Q8IY17 1366 aa16.77■□□□□ 0.28
CTSA-209ENST00000493522 NALCNQ8IZF0 1738 aa16.77■□□□□ 0.28
CTSA-209ENST00000493522 KIAA1210Q9ULL0 1709 aa16.77■□□□□ 0.28
CTSA-209ENST00000493522 PTCH1Q13635 1447 aa16.77■□□□□ 0.27
CTSA-209ENST00000493522 DCAF11Q8TEB1 546 aa16.76■□□□□ 0.27
CTSA-209ENST00000493522 C8orf37Q96NL8 207 aa16.76■□□□□ 0.27
CTSA-209ENST00000493522 DDX17Q92841 729 aaKnown RBP16.75■□□□□ 0.27
CTSA-209ENST00000493522 KDM2AQ9Y2K7 1162 aa16.75■□□□□ 0.27
CTSA-209ENST00000493522 C1orf167Q5SNV9 1468 aa16.74■□□□□ 0.27
CTSA-209ENST00000493522 SRCAPQ6ZRS2 3230 aa16.74■□□□□ 0.27
CTSA-209ENST00000493522 TRPM1Q7Z4N2 1603 aa16.73■□□□□ 0.27
CTSA-209ENST00000493522 TONSLQ96HA7 1378 aa16.73■□□□□ 0.27
CTSA-209ENST00000493522 RBM6P78332 1123 aaKnown RBP16.72■□□□□ 0.27
CTSA-209ENST00000493522 QTRT2Q9H974 415 aaKnown RBP16.72■□□□□ 0.27
CTSA-209ENST00000493522 RGS12O14924 1447 aa16.71■□□□□ 0.27
CTSA-209ENST00000493522 CCER1Q8TC90 406 aaPredicted RBP16.71■□□□□ 0.27
CTSA-209ENST00000493522 ROBO2Q9HCK4 1378 aa16.71■□□□□ 0.27
CTSA-209ENST00000493522 PRAG1Q86YV5 1406 aa16.7■□□□□ 0.26
CTSA-209ENST00000493522 NGLY1Q96IV0 654 aa16.7■□□□□ 0.26
CTSA-209ENST00000493522 ADAMTS2O95450 1211 aa16.69■□□□□ 0.26
CTSA-209ENST00000493522 L3MBTL2Q969R5 705 aa16.69■□□□□ 0.26
CTSA-209ENST00000493522 STAC3Q96MF2 364 aa16.69■□□□□ 0.26
CTSA-209ENST00000493522 ARHGEF28Q8N1W1 1705 aaKnown RBP16.69■□□□□ 0.26
CTSA-209ENST00000493522 SOS2Q07890 1332 aaPredicted RBP16.69■□□□□ 0.26
CTSA-209ENST00000493522 CLSPNQ9HAW4 1339 aa16.69■□□□□ 0.26
CTSA-209ENST00000493522 ADGRB1O14514 1584 aa16.68■□□□□ 0.26
CTSA-209ENST00000493522 ORAI2Q96SN7 254 aa16.68■□□□□ 0.26
CTSA-209ENST00000493522 CFAP70Q5T0N1 1121 aa16.67■□□□□ 0.26
CTSA-209ENST00000493522 YTHDC2Q9H6S0 1430 aaKnown RBP16.66■□□□□ 0.26
CTSA-209ENST00000493522 C14orf93Q9H972 538 aaKnown RBP16.66■□□□□ 0.26
CTSA-209ENST00000493522 USP21Q9UK80 565 aa16.65■□□□□ 0.26
CTSA-209ENST00000493522 LRPPRCP42704 1394 aaKnown RBP16.64■□□□□ 0.26
CTSA-209ENST00000493522 TMEM132EQ6IEE7 984 aa16.64■□□□□ 0.25
CTSA-209ENST00000493522 EP400Q96L91 3159 aa16.63■□□□□ 0.25
CTSA-209ENST00000493522 TECPR2O15040 1411 aa16.63■□□□□ 0.25
CTSA-209ENST00000493522 TRPC5Q9UL62 973 aaPredicted RBP16.63■□□□□ 0.25
CTSA-209ENST00000493522 NPHP3Q7Z494 1330 aa16.63■□□□□ 0.25
CTSA-209ENST00000493522 CDC42BPGQ6DT37 1551 aa16.63■□□□□ 0.25
CTSA-209ENST00000493522 ATAD2Q6PL18 1390 aa16.63■□□□□ 0.25
CTSA-209ENST00000493522 DLC1Q96QB1 1528 aa16.62■□□□□ 0.25
CTSA-209ENST00000493522 STK26Q9P289 416 aa16.62■□□□□ 0.25
CTSA-209ENST00000493522 COL22A1Q8NFW1 1626 aaPredicted RBP16.62■□□□□ 0.25
CTSA-209ENST00000493522 ESCO1Q5FWF5 840 aa16.61■□□□□ 0.25
CTSA-209ENST00000493522 FNBP4Q8N3X1 1017 aaPredicted RBP16.61■□□□□ 0.25
CTSA-209ENST00000493522 QRICH2Q9H0J4 1663 aa16.59■□□□□ 0.25
CTSA-209ENST00000493522 ABCC11Q96J66 1382 aa16.59■□□□□ 0.25
CTSA-209ENST00000493522 ATRNO75882 1429 aa16.58■□□□□ 0.24
CTSA-209ENST00000493522 RALGAPBQ86X10 1494 aa16.58■□□□□ 0.24
CTSA-209ENST00000493522 FMN2Q9NZ56 1722 aa16.57■□□□□ 0.24
CTSA-209ENST00000493522 PXDNQ92626 1479 aa16.57■□□□□ 0.24
CTSA-209ENST00000493522 ROCK2O75116 1388 aaKnown RBP16.56■□□□□ 0.24
CTSA-209ENST00000493522 FOXO3O43524 673 aa16.56■□□□□ 0.24
CTSA-209ENST00000493522 PLEKHH1Q9ULM0 1364 aa16.55■□□□□ 0.24
CTSA-209ENST00000493522 ADGRB2O60241 1585 aa16.55■□□□□ 0.24
CTSA-209ENST00000493522 RGPD8O14715 1765 aaPredicted RBP16.54■□□□□ 0.24
CTSA-209ENST00000493522 XPCQ01831 940 aaPredicted RBP16.54■□□□□ 0.24
CTSA-209ENST00000493522 NBPF1Q3BBV0 1214 aa16.54■□□□□ 0.24
CTSA-209ENST00000493522 NBPF8Q3BBV2 869 aa16.54■□□□□ 0.24
CTSA-209ENST00000493522 TRAK1Q9UPV9 953 aa16.54■□□□□ 0.24
CTSA-209ENST00000493522 BCL9LQ86UU0 1499 aa16.54■□□□□ 0.24
CTSA-209ENST00000493522 NUTM2FA1L443 756 aa16.52■□□□□ 0.24
CTSA-209ENST00000493522 WAPLQ7Z5K2 1190 aa16.52■□□□□ 0.24
CTSA-209ENST00000493522 PRAM1Q96QH2 718 aa16.51■□□□□ 0.23
CTSA-209ENST00000493522 POGKQ9P215 609 aa16.51■□□□□ 0.23
CTSA-209ENST00000493522 TIMELESSQ9UNS1 1208 aa16.51■□□□□ 0.23
CTSA-209ENST00000493522 MARF1Q9Y4F3 1742 aaKnown RBP16.5■□□□□ 0.23
CTSA-209ENST00000493522 SAFB2Q14151 953 aaKnown RBP eCLIP16.5■□□□□ 0.23
CTSA-209ENST00000493522 CCDC125Q86Z20 511 aa16.5■□□□□ 0.23
CTSA-209ENST00000493522 GJD4Q96KN9 370 aaPredicted RBP16.5■□□□□ 0.23
CTSA-209ENST00000493522 ITSN1Q15811 1721 aa16.5■□□□□ 0.23
CTSA-209ENST00000493522 GPRASP1Q5JY77 1395 aa16.5■□□□□ 0.23
CTSA-209ENST00000493522 KIF1AQ12756 1690 aa16.5■□□□□ 0.23
CTSA-209ENST00000493522 ZRANB1Q9UGI0 708 aa16.49■□□□□ 0.23
CTSA-209ENST00000493522 SIRT1Q96EB6 747 aa16.48■□□□□ 0.23
CTSA-209ENST00000493522 EIF3AQ14152 1382 aaKnown RBP16.48■□□□□ 0.23
CTSA-209ENST00000493522 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.48■□□□□ 0.23
CTSA-209ENST00000493522 SPATA31A3Q5VYP0 1347 aa16.47■□□□□ 0.23
CTSA-209ENST00000493522 UNC5CLQ8IV45 518 aa16.47■□□□□ 0.23
CTSA-209ENST00000493522 USP32Q8NFA0 1604 aa16.47■□□□□ 0.23
CTSA-209ENST00000493522 SLIT2O94813 1529 aa16.46■□□□□ 0.23
CTSA-209ENST00000493522 MINK1Q8N4C8 1332 aaPredicted RBP16.45■□□□□ 0.22
CTSA-209ENST00000493522 HAP1P54257 671 aaPredicted RBP16.45■□□□□ 0.22
CTSA-209ENST00000493522 KRT28Q7Z3Y7 464 aa16.45■□□□□ 0.22
CTSA-209ENST00000493522 CARD11Q9BXL7 1154 aa16.45■□□□□ 0.22
CTSA-209ENST00000493522 TNS3Q68CZ2 1445 aa16.45■□□□□ 0.22
CTSA-209ENST00000493522 PSME1Q06323 249 aa16.44■□□□□ 0.22
CTSA-209ENST00000493522 CENPJQ9HC77 1338 aaPredicted RBP16.44■□□□□ 0.22
CTSA-209ENST00000493522 TOPAZ1Q8N9V7 1692 aa16.43■□□□□ 0.22
CTSA-209ENST00000493522 PHF8Q9UPP1 1060 aa16.43■□□□□ 0.22
CTSA-209ENST00000493522 TULP4Q9NRJ4 1543 aa16.43■□□□□ 0.22
CTSA-209ENST00000493522 GLI3P10071 1580 aa16.43■□□□□ 0.22
CTSA-209ENST00000493522 HIRIP3Q9BW71 556 aaPredicted RBP16.42■□□□□ 0.22
CTSA-209ENST00000493522 BLMP54132 1417 aaPredicted RBP16.42■□□□□ 0.22
CTSA-209ENST00000493522 ARHGEF10O15013 1369 aa16.4■□□□□ 0.22
CTSA-209ENST00000493522 SBNO1A3KN83 1393 aa16.39■□□□□ 0.21
CTSA-209ENST00000493522 USP47Q96K76 1375 aa16.38■□□□□ 0.21
CTSA-209ENST00000493522 ANKARQ7Z5J8 1434 aa16.38■□□□□ 0.21
CTSA-209ENST00000493522 SF3B2Q13435 895 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms