RNA–Protein interactions for RNA: ENST00000489554.1

SCAMP4-208, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 3

Gene SCAMP4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-208ENST00000489554 CDC42BPGQ6DT37 1551 aa15.33■□□□□ 0.05
SCAMP4-208ENST00000489554 CCER1Q8TC90 406 aaPredicted RBP15.33■□□□□ 0.04
SCAMP4-208ENST00000489554 CLSPNQ9HAW4 1339 aa15.33■□□□□ 0.04
SCAMP4-208ENST00000489554 NHSL1Q5SYE7 1610 aa15.32■□□□□ 0.04
SCAMP4-208ENST00000489554 WAPLQ7Z5K2 1190 aa15.32■□□□□ 0.04
SCAMP4-208ENST00000489554 DCAF11Q8TEB1 546 aa15.32■□□□□ 0.04
SCAMP4-208ENST00000489554 LRRC59Q96AG4 307 aaKnown RBP15.31■□□□□ 0.04
SCAMP4-208ENST00000489554 SHPRHQ149N8 1683 aa15.31■□□□□ 0.04
SCAMP4-208ENST00000489554 RGS17Q9UGC6 210 aaPredicted RBP15.3■□□□□ 0.04
SCAMP4-208ENST00000489554 PLEKHH1Q9ULM0 1364 aa15.3■□□□□ 0.04
SCAMP4-208ENST00000489554 KDM2AQ9Y2K7 1162 aa15.3■□□□□ 0.04
SCAMP4-208ENST00000489554 ORAI2Q96SN7 254 aa15.29■□□□□ 0.04
SCAMP4-208ENST00000489554 DLC1Q96QB1 1528 aa15.27■□□□□ 0.04
SCAMP4-208ENST00000489554 DDX17Q92841 729 aaKnown RBP15.27■□□□□ 0.04
SCAMP4-208ENST00000489554 ADGRB1O14514 1584 aa15.27■□□□□ 0.03
SCAMP4-208ENST00000489554 SOS2Q07890 1332 aaPredicted RBP15.26■□□□□ 0.03
SCAMP4-208ENST00000489554 LRP6O75581 1613 aa15.26■□□□□ 0.03
SCAMP4-208ENST00000489554 ESCO1Q5FWF5 840 aa15.26■□□□□ 0.03
SCAMP4-208ENST00000489554 MEX3CQ5U5Q3 659 aaKnown RBP15.26■□□□□ 0.03
SCAMP4-208ENST00000489554 SIN3AQ96ST3 1273 aa15.26■□□□□ 0.03
SCAMP4-208ENST00000489554 NPHP3Q7Z494 1330 aa15.25■□□□□ 0.03
SCAMP4-208ENST00000489554 PRAM1Q96QH2 718 aa15.25■□□□□ 0.03
SCAMP4-208ENST00000489554 PNPLA6Q8IY17 1366 aa15.24■□□□□ 0.03
SCAMP4-208ENST00000489554 POGKQ9P215 609 aa15.24■□□□□ 0.03
SCAMP4-208ENST00000489554 NUTM2BA6NNL0 878 aaPredicted RBP15.23■□□□□ 0.03
SCAMP4-208ENST00000489554 NUTM2EB1AL46 878 aaPredicted RBP15.23■□□□□ 0.03
SCAMP4-208ENST00000489554 NUTM2AQ8IVF1 878 aaPredicted RBP15.23■□□□□ 0.03
SCAMP4-208ENST00000489554 FMN2Q9NZ56 1722 aa15.23■□□□□ 0.03
SCAMP4-208ENST00000489554 NUTM2FA1L443 756 aa15.22■□□□□ 0.03
SCAMP4-208ENST00000489554 POTEAQ6S8J7 498 aa15.22■□□□□ 0.03
SCAMP4-208ENST00000489554 TRAK1Q9UPV9 953 aa15.22■□□□□ 0.03
SCAMP4-208ENST00000489554 SAFB2Q14151 953 aaKnown RBP eCLIP15.21■□□□□ 0.03
SCAMP4-208ENST00000489554 ZNF772Q68DY9 489 aaPredicted RBP15.21■□□□□ 0.03
SCAMP4-208ENST00000489554 FOXO3O43524 673 aa15.2■□□□□ 0.02
SCAMP4-208ENST00000489554 PXDNQ92626 1479 aa15.2■□□□□ 0.02
SCAMP4-208ENST00000489554 ADGRB2O60241 1585 aa15.19■□□□□ 0.02
SCAMP4-208ENST00000489554 KIF1AQ12756 1690 aa15.19■□□□□ 0.02
SCAMP4-208ENST00000489554 ANKARQ7Z5J8 1434 aa15.18■□□□□ 0.02
SCAMP4-208ENST00000489554 EIF3AQ14152 1382 aaKnown RBP15.18■□□□□ 0.02
SCAMP4-208ENST00000489554 PHF8Q9UPP1 1060 aa15.17■□□□□ 0.02
SCAMP4-208ENST00000489554 KIAA1210Q9ULL0 1709 aa15.17■□□□□ 0.02
SCAMP4-208ENST00000489554 NEUROD1Q13562 356 aa15.16■□□□□ 0.02
SCAMP4-208ENST00000489554 MINK1Q8N4C8 1332 aaPredicted RBP15.16■□□□□ 0.02
SCAMP4-208ENST00000489554 COL22A1Q8NFW1 1626 aaPredicted RBP15.15■□□□□ 0.02
SCAMP4-208ENST00000489554 XPCQ01831 940 aaPredicted RBP15.15■□□□□ 0.02
SCAMP4-208ENST00000489554 AFF2P51816 1311 aa15.15■□□□□ 0.02
SCAMP4-208ENST00000489554 WASLO00401 505 aaPredicted RBP15.14■□□□□ 0.01
SCAMP4-208ENST00000489554 KRT28Q7Z3Y7 464 aa15.14■□□□□ 0.01
SCAMP4-208ENST00000489554 C8orf37Q96NL8 207 aa15.14■□□□□ 0.01
SCAMP4-208ENST00000489554 HIRIP3Q9BW71 556 aaPredicted RBP15.14■□□□□ 0.01
SCAMP4-208ENST00000489554 ADAMTS2O95450 1211 aa15.13■□□□□ 0.01
SCAMP4-208ENST00000489554 ZEB1P37275 1124 aaPredicted RBP15.13■□□□□ 0.01
SCAMP4-208ENST00000489554 PSME1Q06323 249 aa15.13■□□□□ 0.01
SCAMP4-208ENST00000489554 ARHGEF28Q8N1W1 1705 aaKnown RBP15.13■□□□□ 0.01
SCAMP4-208ENST00000489554 L3MBTL2Q969R5 705 aa15.13■□□□□ 0.01
SCAMP4-208ENST00000489554 SPATA31A3Q5VYP0 1347 aa15.13■□□□□ 0.01
SCAMP4-208ENST00000489554 TULP4Q9NRJ4 1543 aa15.12■□□□□ 0.01
SCAMP4-208ENST00000489554 NGLY1Q96IV0 654 aa15.12■□□□□ 0.01
SCAMP4-208ENST00000489554 USP32Q8NFA0 1604 aa15.11■□□□□ 0.01
SCAMP4-208ENST00000489554 NBPF1Q3BBV0 1214 aa15.11■□□□□ 0.01
SCAMP4-208ENST00000489554 TIMELESSQ9UNS1 1208 aa15.11■□□□□ 0.01
SCAMP4-208ENST00000489554 SBNO1A3KN83 1393 aa15.11■□□□□ 0.01
SCAMP4-208ENST00000489554 RXRBP28702 533 aa15.1■□□□□ 0.01
SCAMP4-208ENST00000489554 RGPD8O14715 1765 aaPredicted RBP15.1■□□□□ 0.01
SCAMP4-208ENST00000489554 PRR36Q9H6K5 1346 aa15.1■□□□□ 0.01
SCAMP4-208ENST00000489554 TONSLQ96HA7 1378 aa15.1■□□□□ 0.01
SCAMP4-208ENST00000489554 TNS3Q68CZ2 1445 aa15.09■□□□□ 0.01
SCAMP4-208ENST00000489554 PMFBP1Q8TBY8 1022 aa15.09■□□□□ 0.01
SCAMP4-208ENST00000489554 CDK12Q9NYV4 1490 aaPredicted RBP15.08■□□□□ 0.01
SCAMP4-208ENST00000489554 FNBP4Q8N3X1 1017 aaPredicted RBP15.08■□□□□ 0
SCAMP4-208ENST00000489554 ARHGEF10O15013 1369 aa15.08■□□□□ 0
SCAMP4-208ENST00000489554 GPRASP1Q5JY77 1395 aa15.08■□□□□ 0
SCAMP4-208ENST00000489554 QTRT2Q9H974 415 aaKnown RBP15.07■□□□□ 0
SCAMP4-208ENST00000489554 USP21Q9UK80 565 aa15.07■□□□□ 0
SCAMP4-208ENST00000489554 RBM6P78332 1123 aaKnown RBP15.06■□□□□ 0
SCAMP4-208ENST00000489554 NUDT16Q96DE0 195 aaKnown RBP15.06■□□□□ 0
SCAMP4-208ENST00000489554 CDK19Q9BWU1 502 aa15.06■□□□□ 0
SCAMP4-208ENST00000489554 CENPJQ9HC77 1338 aaPredicted RBP15.06■□□□□ 0
SCAMP4-208ENST00000489554 ATP7BP35670 1465 aa15.06■□□□□ 0
SCAMP4-208ENST00000489554 NGDNQ8NEJ9 315 aaKnown RBP15.05■□□□□ -0
SCAMP4-208ENST00000489554 HAP1P54257 671 aaPredicted RBP15.04■□□□□ -0
SCAMP4-208ENST00000489554 LMOD2Q6P5Q4 547 aa15.04■□□□□ -0
SCAMP4-208ENST00000489554 TRPC5Q9UL62 973 aaPredicted RBP15.04■□□□□ -0
SCAMP4-208ENST00000489554 TRPM1Q7Z4N2 1603 aa15.03■□□□□ -0
SCAMP4-208ENST00000489554 ROCK2O75116 1388 aaKnown RBP15.03■□□□□ -0
SCAMP4-208ENST00000489554 CCDC61Q9Y6R9 512 aa15.03■□□□□ -0
SCAMP4-208ENST00000489554 ITSN1Q15811 1721 aa15.03■□□□□ -0
SCAMP4-208ENST00000489554 NBPF8Q3BBV2 869 aa15.02■□□□□ -0
SCAMP4-208ENST00000489554 ATRNO75882 1429 aa15.01□□□□□ -0.01
SCAMP4-208ENST00000489554 TRPM3Q9HCF6 1732 aaPredicted RBP15.01□□□□□ -0.01
SCAMP4-208ENST00000489554 MARF1Q9Y4F3 1742 aaKnown RBP15.01□□□□□ -0.01
SCAMP4-208ENST00000489554 BCL9LQ86UU0 1499 aa15.01□□□□□ -0.01
SCAMP4-208ENST00000489554 PLEKHG3A1L390 1219 aa15□□□□□ -0.01
SCAMP4-208ENST00000489554 SRPK2P78362 688 aaKnown RBP15□□□□□ -0.01
SCAMP4-208ENST00000489554 CABLES1Q8TDN4 633 aa15□□□□□ -0.01
SCAMP4-208ENST00000489554 RGS12O14924 1447 aa15□□□□□ -0.01
SCAMP4-208ENST00000489554 POLR3AO14802 1390 aaPredicted RBP14.99□□□□□ -0.01
SCAMP4-208ENST00000489554 SLIT2O94813 1529 aa14.99□□□□□ -0.01
SCAMP4-208ENST00000489554 TOPAZ1Q8N9V7 1692 aa14.99□□□□□ -0.01
SCAMP4-208ENST00000489554 ALS2Q96Q42 1657 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms