RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 POGKQ9P215 609 aa22.69■■□□□ 1.22
LMX1A-204ENST00000489443 PHLPP1O60346 1717 aa22.66■■□□□ 1.22
LMX1A-204ENST00000489443 NBPF1Q3BBV0 1214 aa22.65■■□□□ 1.22
LMX1A-204ENST00000489443 DLC1Q96QB1 1528 aa22.64■■□□□ 1.21
LMX1A-204ENST00000489443 KIAA1210Q9ULL0 1709 aa22.64■■□□□ 1.21
LMX1A-204ENST00000489443 C1orf167Q5SNV9 1468 aa22.64■■□□□ 1.21
LMX1A-204ENST00000489443 CDC42BPGQ6DT37 1551 aa22.63■■□□□ 1.21
LMX1A-204ENST00000489443 NUTM2FA1L443 756 aa22.63■■□□□ 1.21
LMX1A-204ENST00000489443 ORAI2Q96SN7 254 aa22.62■■□□□ 1.21
LMX1A-204ENST00000489443 TONSLQ96HA7 1378 aa22.61■■□□□ 1.21
LMX1A-204ENST00000489443 DDX17Q92841 729 aaKnown RBP22.59■■□□□ 1.21
LMX1A-204ENST00000489443 AHDC1Q5TGY3 1603 aaPredicted RBP22.59■■□□□ 1.21
LMX1A-204ENST00000489443 MINK1Q8N4C8 1332 aaPredicted RBP22.58■■□□□ 1.21
LMX1A-204ENST00000489443 ESCO1Q5FWF5 840 aa22.58■■□□□ 1.21
LMX1A-204ENST00000489443 HIRIP3Q9BW71 556 aaPredicted RBP22.58■■□□□ 1.21
LMX1A-204ENST00000489443 DISP3Q9P2K9 1392 aa22.58■■□□□ 1.21
LMX1A-204ENST00000489443 COL16A1Q07092 1604 aaPredicted RBP22.57■■□□□ 1.2
LMX1A-204ENST00000489443 ARHGEF28Q8N1W1 1705 aaKnown RBP22.57■■□□□ 1.2
LMX1A-204ENST00000489443 FMN2Q9NZ56 1722 aa22.56■■□□□ 1.2
LMX1A-204ENST00000489443 NHSL1Q5SYE7 1610 aa22.55■■□□□ 1.2
LMX1A-204ENST00000489443 NBPF8Q3BBV2 869 aa22.54■■□□□ 1.2
LMX1A-204ENST00000489443 TRPM1Q7Z4N2 1603 aa22.53■■□□□ 1.2
LMX1A-204ENST00000489443 JCADQ9P266 1359 aa22.53■■□□□ 1.2
LMX1A-204ENST00000489443 MED1Q15648 1581 aaPredicted RBP22.53■■□□□ 1.2
LMX1A-204ENST00000489443 RGPD8O14715 1765 aaPredicted RBP22.51■■□□□ 1.19
LMX1A-204ENST00000489443 ROCK2O75116 1388 aaKnown RBP22.5■■□□□ 1.19
LMX1A-204ENST00000489443 ADGRB2O60241 1585 aa22.5■■□□□ 1.19
LMX1A-204ENST00000489443 WASLO00401 505 aaPredicted RBP22.49■■□□□ 1.19
LMX1A-204ENST00000489443 FOXO3O43524 673 aa22.49■■□□□ 1.19
LMX1A-204ENST00000489443 LRRC59Q96AG4 307 aaKnown RBP22.49■■□□□ 1.19
LMX1A-204ENST00000489443 CCER1Q8TC90 406 aaPredicted RBP22.47■■□□□ 1.19
LMX1A-204ENST00000489443 NPHP3Q7Z494 1330 aa22.47■■□□□ 1.19
LMX1A-204ENST00000489443 XPCQ01831 940 aaPredicted RBP22.46■■□□□ 1.19
LMX1A-204ENST00000489443 PHF8Q9UPP1 1060 aa22.46■■□□□ 1.19
LMX1A-204ENST00000489443 CLSPNQ9HAW4 1339 aa22.46■■□□□ 1.19
LMX1A-204ENST00000489443 CENPJQ9HC77 1338 aaPredicted RBP22.46■■□□□ 1.19
LMX1A-204ENST00000489443 PHF23Q9BUL5 403 aaPredicted RBP22.45■■□□□ 1.18
LMX1A-204ENST00000489443 SOS2Q07890 1332 aaPredicted RBP22.45■■□□□ 1.18
LMX1A-204ENST00000489443 EIF3AQ14152 1382 aaKnown RBP22.44■■□□□ 1.18
LMX1A-204ENST00000489443 SHPRHQ149N8 1683 aa22.44■■□□□ 1.18
LMX1A-204ENST00000489443 USP32Q8NFA0 1604 aa22.43■■□□□ 1.18
LMX1A-204ENST00000489443 ANKARQ7Z5J8 1434 aa22.43■■□□□ 1.18
LMX1A-204ENST00000489443 CDK19Q9BWU1 502 aa22.43■■□□□ 1.18
LMX1A-204ENST00000489443 KIF1AQ12756 1690 aa22.42■■□□□ 1.18
LMX1A-204ENST00000489443 SPATA31A6Q5VVP1 1343 aa22.42■■□□□ 1.18
LMX1A-204ENST00000489443 PRR36Q9H6K5 1346 aa22.42■■□□□ 1.18
LMX1A-204ENST00000489443 NUTM2BA6NNL0 878 aaPredicted RBP22.42■■□□□ 1.18
LMX1A-204ENST00000489443 NUTM2EB1AL46 878 aaPredicted RBP22.42■■□□□ 1.18
LMX1A-204ENST00000489443 NUTM2AQ8IVF1 878 aaPredicted RBP22.42■■□□□ 1.18
LMX1A-204ENST00000489443 PMFBP1Q8TBY8 1022 aa22.42■■□□□ 1.18
LMX1A-204ENST00000489443 CARD11Q9BXL7 1154 aa22.42■■□□□ 1.18
LMX1A-204ENST00000489443 TULP4Q9NRJ4 1543 aa22.41■■□□□ 1.18
LMX1A-204ENST00000489443 GPRASP1Q5JY77 1395 aa22.4■■□□□ 1.18
LMX1A-204ENST00000489443 QRICH2Q9H0J4 1663 aa22.4■■□□□ 1.18
LMX1A-204ENST00000489443 PXDNQ92626 1479 aa22.4■■□□□ 1.18
LMX1A-204ENST00000489443 PNPLA6Q8IY17 1366 aa22.39■■□□□ 1.18
LMX1A-204ENST00000489443 KRT28Q7Z3Y7 464 aa22.39■■□□□ 1.17
LMX1A-204ENST00000489443 NUDT16Q96DE0 195 aaKnown RBP22.39■■□□□ 1.17
LMX1A-204ENST00000489443 RALGAPBQ86X10 1494 aa22.39■■□□□ 1.17
LMX1A-204ENST00000489443 PSME1Q06323 249 aa22.38■■□□□ 1.17
LMX1A-204ENST00000489443 MEX3CQ5U5Q3 659 aaKnown RBP22.38■■□□□ 1.17
LMX1A-204ENST00000489443 SRPK2P78362 688 aaKnown RBP22.36■■□□□ 1.17
LMX1A-204ENST00000489443 TIMELESSQ9UNS1 1208 aa22.36■■□□□ 1.17
LMX1A-204ENST00000489443 LRP6O75581 1613 aa22.35■■□□□ 1.17
LMX1A-204ENST00000489443 NGDNQ8NEJ9 315 aaKnown RBP22.34■■□□□ 1.17
LMX1A-204ENST00000489443 CABP2Q9NPB3 220 aa22.34■■□□□ 1.17
LMX1A-204ENST00000489443 ATP7BP35670 1465 aa22.34■■□□□ 1.17
LMX1A-204ENST00000489443 ILDR2Q71H61 639 aa22.33■■□□□ 1.17
LMX1A-204ENST00000489443 ITSN1Q15811 1721 aa22.33■■□□□ 1.17
LMX1A-204ENST00000489443 CCDC61Q9Y6R9 512 aa22.32■■□□□ 1.16
LMX1A-204ENST00000489443 SPATA31A3Q5VYP0 1347 aa22.31■■□□□ 1.16
LMX1A-204ENST00000489443 EVC2Q86UK5 1308 aa22.31■■□□□ 1.16
LMX1A-204ENST00000489443 LMOD2Q6P5Q4 547 aa22.31■■□□□ 1.16
LMX1A-204ENST00000489443 RGS17Q9UGC6 210 aaPredicted RBP22.31■■□□□ 1.16
LMX1A-204ENST00000489443 ADAMTS2O95450 1211 aa22.29■■□□□ 1.16
LMX1A-204ENST00000489443 SBNO1A3KN83 1393 aa22.27■■□□□ 1.16
LMX1A-204ENST00000489443 PLEKHG5O94827 1062 aa22.27■■□□□ 1.16
LMX1A-204ENST00000489443 TNS3Q68CZ2 1445 aa22.27■■□□□ 1.16
LMX1A-204ENST00000489443 COL22A1Q8NFW1 1626 aaPredicted RBP22.27■■□□□ 1.16
LMX1A-204ENST00000489443 TOPAZ1Q8N9V7 1692 aa22.26■■□□□ 1.15
LMX1A-204ENST00000489443 C8orf37Q96NL8 207 aa22.26■■□□□ 1.15
LMX1A-204ENST00000489443 ACEP12821 1306 aa22.26■■□□□ 1.15
LMX1A-204ENST00000489443 PPIP5K1Q6PFW1 1433 aa22.25■■□□□ 1.15
LMX1A-204ENST00000489443 PLEKHG3A1L390 1219 aa22.25■■□□□ 1.15
LMX1A-204ENST00000489443 PAK3O75914 559 aaPredicted RBP22.25■■□□□ 1.15
LMX1A-204ENST00000489443 ST20-MTHFSA0A0A6YYL1 179 aa22.23■■□□□ 1.15
LMX1A-204ENST00000489443 POTEAQ6S8J7 498 aa22.23■■□□□ 1.15
LMX1A-204ENST00000489443 CABP1Q9NZU7 370 aa22.23■■□□□ 1.15
LMX1A-204ENST00000489443 TRPM3Q9HCF6 1732 aaPredicted RBP22.23■■□□□ 1.15
LMX1A-204ENST00000489443 CABLES1Q8TDN4 633 aa22.22■■□□□ 1.15
LMX1A-204ENST00000489443 NGLY1Q96IV0 654 aa22.22■■□□□ 1.15
LMX1A-204ENST00000489443 POLR3AO14802 1390 aaPredicted RBP22.22■■□□□ 1.15
LMX1A-204ENST00000489443 ARHGEF10O15013 1369 aa22.22■■□□□ 1.15
LMX1A-204ENST00000489443 SBNO2Q9Y2G9 1366 aa22.22■■□□□ 1.15
LMX1A-204ENST00000489443 HAP1P54257 671 aaPredicted RBP22.21■■□□□ 1.15
LMX1A-204ENST00000489443 AFF2P51816 1311 aa22.21■■□□□ 1.15
LMX1A-204ENST00000489443 ZNF772Q68DY9 489 aaPredicted RBP22.2■■□□□ 1.14
LMX1A-204ENST00000489443 USP47Q96K76 1375 aa22.18■■□□□ 1.14
LMX1A-204ENST00000489443 ALS2Q96Q42 1657 aa22.17■■□□□ 1.14
LMX1A-204ENST00000489443 ATAD2Q6PL18 1390 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms