RNA–Protein interactions for RNA: ENST00000487496.1

SPEN-205, Transcript of spen family transcriptional repressor, humanhuman

TSL 1 (best)

Gene SPEN, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-205ENST00000487496 DHX57Q6P158 1386 aaKnown RBP16.73■□□□□ 0.27
SPEN-205ENST00000487496 STAC3Q96MF2 364 aa16.72■□□□□ 0.27
SPEN-205ENST00000487496 SPATA31A6Q5VVP1 1343 aa16.71■□□□□ 0.27
SPEN-205ENST00000487496 KNDC1Q76NI1 1749 aa16.7■□□□□ 0.26
SPEN-205ENST00000487496 LRRC59Q96AG4 307 aaKnown RBP16.7■□□□□ 0.26
SPEN-205ENST00000487496 LAMC1P11047 1609 aa16.7■□□□□ 0.26
SPEN-205ENST00000487496 NHSL1Q5SYE7 1610 aa16.7■□□□□ 0.26
SPEN-205ENST00000487496 CDC42BPGQ6DT37 1551 aa16.69■□□□□ 0.26
SPEN-205ENST00000487496 ESCO1Q5FWF5 840 aa16.67■□□□□ 0.26
SPEN-205ENST00000487496 PRAM1Q96QH2 718 aa16.67■□□□□ 0.26
SPEN-205ENST00000487496 LRP6O75581 1613 aa16.67■□□□□ 0.26
SPEN-205ENST00000487496 SHPRHQ149N8 1683 aa16.66■□□□□ 0.26
SPEN-205ENST00000487496 NUTM2FA1L443 756 aa16.66■□□□□ 0.26
SPEN-205ENST00000487496 ADGRB1O14514 1584 aa16.66■□□□□ 0.26
SPEN-205ENST00000487496 SOS2Q07890 1332 aaPredicted RBP16.66■□□□□ 0.26
SPEN-205ENST00000487496 SAFB2Q14151 953 aaKnown RBP eCLIP16.65■□□□□ 0.26
SPEN-205ENST00000487496 NUTM2BA6NNL0 878 aaPredicted RBP16.64■□□□□ 0.25
SPEN-205ENST00000487496 NUTM2EB1AL46 878 aaPredicted RBP16.64■□□□□ 0.25
SPEN-205ENST00000487496 MEX3CQ5U5Q3 659 aaKnown RBP16.64■□□□□ 0.25
SPEN-205ENST00000487496 POTEAQ6S8J7 498 aa16.64■□□□□ 0.25
SPEN-205ENST00000487496 NUTM2AQ8IVF1 878 aaPredicted RBP16.64■□□□□ 0.25
SPEN-205ENST00000487496 POGKQ9P215 609 aa16.64■□□□□ 0.25
SPEN-205ENST00000487496 TRAK1Q9UPV9 953 aa16.64■□□□□ 0.25
SPEN-205ENST00000487496 DLC1Q96QB1 1528 aa16.64■□□□□ 0.25
SPEN-205ENST00000487496 PNPLA6Q8IY17 1366 aa16.63■□□□□ 0.25
SPEN-205ENST00000487496 FOXO3O43524 673 aa16.62■□□□□ 0.25
SPEN-205ENST00000487496 NPHP3Q7Z494 1330 aa16.62■□□□□ 0.25
SPEN-205ENST00000487496 FMN2Q9NZ56 1722 aa16.59■□□□□ 0.25
SPEN-205ENST00000487496 SIN3AQ96ST3 1273 aa16.59■□□□□ 0.25
SPEN-205ENST00000487496 XPCQ01831 940 aaPredicted RBP16.58■□□□□ 0.24
SPEN-205ENST00000487496 PXDNQ92626 1479 aa16.57■□□□□ 0.24
SPEN-205ENST00000487496 ZNF772Q68DY9 489 aaPredicted RBP16.57■□□□□ 0.24
SPEN-205ENST00000487496 L3MBTL2Q969R5 705 aa16.57■□□□□ 0.24
SPEN-205ENST00000487496 HIRIP3Q9BW71 556 aaPredicted RBP16.57■□□□□ 0.24
SPEN-205ENST00000487496 MINK1Q8N4C8 1332 aaPredicted RBP16.56■□□□□ 0.24
SPEN-205ENST00000487496 TRIM26Q12899 539 aaPredicted RBP16.56■□□□□ 0.24
SPEN-205ENST00000487496 PHF8Q9UPP1 1060 aa16.56■□□□□ 0.24
SPEN-205ENST00000487496 NBPF1Q3BBV0 1214 aa16.55■□□□□ 0.24
SPEN-205ENST00000487496 ADAMTS2O95450 1211 aa16.54■□□□□ 0.24
SPEN-205ENST00000487496 NEUROD1Q13562 356 aa16.54■□□□□ 0.24
SPEN-205ENST00000487496 C8orf37Q96NL8 207 aa16.54■□□□□ 0.24
SPEN-205ENST00000487496 ADGRB2O60241 1585 aa16.54■□□□□ 0.24
SPEN-205ENST00000487496 ANKARQ7Z5J8 1434 aa16.53■□□□□ 0.24
SPEN-205ENST00000487496 WASLO00401 505 aaPredicted RBP16.53■□□□□ 0.24
SPEN-205ENST00000487496 KRT28Q7Z3Y7 464 aa16.53■□□□□ 0.24
SPEN-205ENST00000487496 AFF2P51816 1311 aa16.52■□□□□ 0.24
SPEN-205ENST00000487496 KIAA1210Q9ULL0 1709 aa16.52■□□□□ 0.24
SPEN-205ENST00000487496 KIF1AQ12756 1690 aa16.52■□□□□ 0.23
SPEN-205ENST00000487496 SPATA31A3Q5VYP0 1347 aa16.51■□□□□ 0.23
SPEN-205ENST00000487496 PMFBP1Q8TBY8 1022 aa16.51■□□□□ 0.23
SPEN-205ENST00000487496 RGPD8O14715 1765 aaPredicted RBP16.51■□□□□ 0.23
SPEN-205ENST00000487496 EIF3AQ14152 1382 aaKnown RBP16.51■□□□□ 0.23
SPEN-205ENST00000487496 PRR36Q9H6K5 1346 aa16.5■□□□□ 0.23
SPEN-205ENST00000487496 COL22A1Q8NFW1 1626 aaPredicted RBP16.5■□□□□ 0.23
SPEN-205ENST00000487496 PSME1Q06323 249 aa16.5■□□□□ 0.23
SPEN-205ENST00000487496 NGLY1Q96IV0 654 aa16.5■□□□□ 0.23
SPEN-205ENST00000487496 ARHGEF28Q8N1W1 1705 aaKnown RBP16.5■□□□□ 0.23
SPEN-205ENST00000487496 USP32Q8NFA0 1604 aa16.49■□□□□ 0.23
SPEN-205ENST00000487496 TULP4Q9NRJ4 1543 aa16.48■□□□□ 0.23
SPEN-205ENST00000487496 RXRBP28702 533 aa16.47■□□□□ 0.23
SPEN-205ENST00000487496 FNBP4Q8N3X1 1017 aaPredicted RBP16.46■□□□□ 0.23
SPEN-205ENST00000487496 NUDT16Q96DE0 195 aaKnown RBP16.46■□□□□ 0.23
SPEN-205ENST00000487496 CDK19Q9BWU1 502 aa16.46■□□□□ 0.23
SPEN-205ENST00000487496 QTRT2Q9H974 415 aaKnown RBP16.46■□□□□ 0.23
SPEN-205ENST00000487496 SBNO1A3KN83 1393 aa16.46■□□□□ 0.23
SPEN-205ENST00000487496 TNS3Q68CZ2 1445 aa16.45■□□□□ 0.22
SPEN-205ENST00000487496 USP21Q9UK80 565 aa16.44■□□□□ 0.22
SPEN-205ENST00000487496 CENPJQ9HC77 1338 aaPredicted RBP16.44■□□□□ 0.22
SPEN-205ENST00000487496 ATP7BP35670 1465 aa16.43■□□□□ 0.22
SPEN-205ENST00000487496 GPRASP1Q5JY77 1395 aa16.43■□□□□ 0.22
SPEN-205ENST00000487496 LMOD2Q6P5Q4 547 aa16.43■□□□□ 0.22
SPEN-205ENST00000487496 NGDNQ8NEJ9 315 aaKnown RBP16.43■□□□□ 0.22
SPEN-205ENST00000487496 RBM6P78332 1123 aaKnown RBP16.42■□□□□ 0.22
SPEN-205ENST00000487496 CABLES1Q8TDN4 633 aa16.42■□□□□ 0.22
SPEN-205ENST00000487496 ARHGEF10O15013 1369 aa16.41■□□□□ 0.22
SPEN-205ENST00000487496 NBPF8Q3BBV2 869 aa16.41■□□□□ 0.22
SPEN-205ENST00000487496 ROCK2O75116 1388 aaKnown RBP16.4■□□□□ 0.22
SPEN-205ENST00000487496 PLEKHG5O94827 1062 aa16.4■□□□□ 0.22
SPEN-205ENST00000487496 HAP1P54257 671 aaPredicted RBP16.4■□□□□ 0.22
SPEN-205ENST00000487496 TRPC5Q9UL62 973 aaPredicted RBP16.4■□□□□ 0.22
SPEN-205ENST00000487496 CCDC61Q9Y6R9 512 aa16.4■□□□□ 0.22
SPEN-205ENST00000487496 TRPM1Q7Z4N2 1603 aa16.4■□□□□ 0.22
SPEN-205ENST00000487496 CDK12Q9NYV4 1490 aaPredicted RBP16.4■□□□□ 0.22
SPEN-205ENST00000487496 BCL9LQ86UU0 1499 aa16.38■□□□□ 0.21
SPEN-205ENST00000487496 SRPK2P78362 688 aaKnown RBP16.38■□□□□ 0.21
SPEN-205ENST00000487496 TONSLQ96HA7 1378 aa16.38■□□□□ 0.21
SPEN-205ENST00000487496 TRPM3Q9HCF6 1732 aaPredicted RBP16.37■□□□□ 0.21
SPEN-205ENST00000487496 PLEKHG3A1L390 1219 aa16.37■□□□□ 0.21
SPEN-205ENST00000487496 PAK3O75914 559 aaPredicted RBP16.37■□□□□ 0.21
SPEN-205ENST00000487496 CABP2Q9NPB3 220 aa16.37■□□□□ 0.21
SPEN-205ENST00000487496 ATRNO75882 1429 aa16.36■□□□□ 0.21
SPEN-205ENST00000487496 MARF1Q9Y4F3 1742 aaKnown RBP16.36■□□□□ 0.21
SPEN-205ENST00000487496 ACEP12821 1306 aa16.36■□□□□ 0.21
SPEN-205ENST00000487496 POLR3AO14802 1390 aaPredicted RBP16.36■□□□□ 0.21
SPEN-205ENST00000487496 ITSN1Q15811 1721 aa16.36■□□□□ 0.21
SPEN-205ENST00000487496 UNC5CLQ8IV45 518 aa16.35■□□□□ 0.21
SPEN-205ENST00000487496 RGS12O14924 1447 aa16.35■□□□□ 0.21
SPEN-205ENST00000487496 SLIT2O94813 1529 aa16.35■□□□□ 0.21
SPEN-205ENST00000487496 ALS2Q96Q42 1657 aa16.34■□□□□ 0.21
SPEN-205ENST00000487496 QRICH2Q9H0J4 1663 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms