RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 PRAM1Q96QH2 718 aa16.95■□□□□ 0.3
HPS4-214ENST00000485842 DCCP43146 1447 aa16.95■□□□□ 0.3
HPS4-214ENST00000485842 ROCK2O75116 1388 aaKnown RBP16.94■□□□□ 0.3
HPS4-214ENST00000485842 CADPS2Q86UW7 1296 aa16.94■□□□□ 0.3
HPS4-214ENST00000485842 POGKQ9P215 609 aa16.94■□□□□ 0.3
HPS4-214ENST00000485842 CDC42BPGQ6DT37 1551 aa16.93■□□□□ 0.3
HPS4-214ENST00000485842 RALGAPBQ86X10 1494 aa16.92■□□□□ 0.3
HPS4-214ENST00000485842 ROBO1Q9Y6N7 1651 aa16.91■□□□□ 0.3
HPS4-214ENST00000485842 SIRT1Q96EB6 747 aa16.91■□□□□ 0.3
HPS4-214ENST00000485842 SLAIN2Q9P270 581 aa16.91■□□□□ 0.3
HPS4-214ENST00000485842 MST1RQ04912 1400 aa16.89■□□□□ 0.29
HPS4-214ENST00000485842 TIMELESSQ9UNS1 1208 aa16.88■□□□□ 0.29
HPS4-214ENST00000485842 MINK1Q8N4C8 1332 aaPredicted RBP16.88■□□□□ 0.29
HPS4-214ENST00000485842 FMN2Q9NZ56 1722 aa16.87■□□□□ 0.29
HPS4-214ENST00000485842 ADGRB2O60241 1585 aa16.87■□□□□ 0.29
HPS4-214ENST00000485842 HIRIP3Q9BW71 556 aaPredicted RBP16.87■□□□□ 0.29
HPS4-214ENST00000485842 GPRASP1Q5JY77 1395 aa16.87■□□□□ 0.29
HPS4-214ENST00000485842 QRICH2Q9H0J4 1663 aa16.86■□□□□ 0.29
HPS4-214ENST00000485842 CARD11Q9BXL7 1154 aa16.86■□□□□ 0.29
HPS4-214ENST00000485842 C1orf167Q5SNV9 1468 aa16.86■□□□□ 0.29
HPS4-214ENST00000485842 NUTM2FA1L443 756 aa16.85■□□□□ 0.29
HPS4-214ENST00000485842 HSPA1LP34931 641 aa16.84■□□□□ 0.29
HPS4-214ENST00000485842 CENPJQ9HC77 1338 aaPredicted RBP16.84■□□□□ 0.29
HPS4-214ENST00000485842 EIF3AQ14152 1382 aaKnown RBP16.84■□□□□ 0.29
HPS4-214ENST00000485842 BRINP3Q76B58 766 aa16.82■□□□□ 0.28
HPS4-214ENST00000485842 PHLPP1O60346 1717 aa16.82■□□□□ 0.28
HPS4-214ENST00000485842 RGPD8O14715 1765 aaPredicted RBP16.8■□□□□ 0.28
HPS4-214ENST00000485842 ORAI2Q96SN7 254 aa16.8■□□□□ 0.28
HPS4-214ENST00000485842 USP32Q8NFA0 1604 aa16.79■□□□□ 0.28
HPS4-214ENST00000485842 WASLO00401 505 aaPredicted RBP16.79■□□□□ 0.28
HPS4-214ENST00000485842 TULP4Q9NRJ4 1543 aa16.79■□□□□ 0.28
HPS4-214ENST00000485842 NHSL1Q5SYE7 1610 aa16.78■□□□□ 0.28
HPS4-214ENST00000485842 AHDC1Q5TGY3 1603 aaPredicted RBP16.78■□□□□ 0.28
HPS4-214ENST00000485842 ESCO1Q5FWF5 840 aa16.78■□□□□ 0.28
HPS4-214ENST00000485842 ANKARQ7Z5J8 1434 aa16.77■□□□□ 0.27
HPS4-214ENST00000485842 KIF1AQ12756 1690 aa16.76■□□□□ 0.27
HPS4-214ENST00000485842 DDX17Q92841 729 aaKnown RBP16.76■□□□□ 0.27
HPS4-214ENST00000485842 COL16A1Q07092 1604 aaPredicted RBP16.76■□□□□ 0.27
HPS4-214ENST00000485842 CDK19Q9BWU1 502 aa16.75■□□□□ 0.27
HPS4-214ENST00000485842 ITSN1Q15811 1721 aa16.75■□□□□ 0.27
HPS4-214ENST00000485842 USP47Q96K76 1375 aa16.75■□□□□ 0.27
HPS4-214ENST00000485842 ATP7BP35670 1465 aa16.74■□□□□ 0.27
HPS4-214ENST00000485842 PRR36Q9H6K5 1346 aa16.74■□□□□ 0.27
HPS4-214ENST00000485842 SRPK2P78362 688 aaKnown RBP16.73■□□□□ 0.27
HPS4-214ENST00000485842 PHF8Q9UPP1 1060 aa16.72■□□□□ 0.27
HPS4-214ENST00000485842 TOPAZ1Q8N9V7 1692 aa16.72■□□□□ 0.27
HPS4-214ENST00000485842 EVC2Q86UK5 1308 aa16.71■□□□□ 0.27
HPS4-214ENST00000485842 FOXO3O43524 673 aa16.71■□□□□ 0.27
HPS4-214ENST00000485842 PMFBP1Q8TBY8 1022 aa16.71■□□□□ 0.27
HPS4-214ENST00000485842 NUDT16Q96DE0 195 aaKnown RBP16.71■□□□□ 0.27
HPS4-214ENST00000485842 CABP2Q9NPB3 220 aa16.71■□□□□ 0.27
HPS4-214ENST00000485842 SBNO2Q9Y2G9 1366 aa16.71■□□□□ 0.27
HPS4-214ENST00000485842 NPHP3Q7Z494 1330 aa16.7■□□□□ 0.26
HPS4-214ENST00000485842 ST20-MTHFSA0A0A6YYL1 179 aa16.7■□□□□ 0.26
HPS4-214ENST00000485842 XPCQ01831 940 aaPredicted RBP16.7■□□□□ 0.26
HPS4-214ENST00000485842 PXDNQ92626 1479 aa16.67■□□□□ 0.26
HPS4-214ENST00000485842 JCADQ9P266 1359 aa16.67■□□□□ 0.26
HPS4-214ENST00000485842 SOS2Q07890 1332 aaPredicted RBP16.67■□□□□ 0.26
HPS4-214ENST00000485842 SHPRHQ149N8 1683 aa16.66■□□□□ 0.26
HPS4-214ENST00000485842 PPIP5K1Q6PFW1 1433 aa16.66■□□□□ 0.26
HPS4-214ENST00000485842 NGDNQ8NEJ9 315 aaKnown RBP16.65■□□□□ 0.26
HPS4-214ENST00000485842 LRRC59Q96AG4 307 aaKnown RBP16.65■□□□□ 0.26
HPS4-214ENST00000485842 TESK2Q96S53 571 aa16.65■□□□□ 0.26
HPS4-214ENST00000485842 CCDC61Q9Y6R9 512 aa16.65■□□□□ 0.26
HPS4-214ENST00000485842 KRT28Q7Z3Y7 464 aa16.64■□□□□ 0.25
HPS4-214ENST00000485842 PSME1Q06323 249 aa16.63■□□□□ 0.25
HPS4-214ENST00000485842 ATAD2Q6PL18 1390 aa16.63■□□□□ 0.25
HPS4-214ENST00000485842 PNPLA6Q8IY17 1366 aa16.63■□□□□ 0.25
HPS4-214ENST00000485842 EIF4G2P78344 907 aaKnown RBP eCLIP16.62■□□□□ 0.25
HPS4-214ENST00000485842 MED1Q15648 1581 aaPredicted RBP16.62■□□□□ 0.25
HPS4-214ENST00000485842 DISP3Q9P2K9 1392 aa16.62■□□□□ 0.25
HPS4-214ENST00000485842 TRPM3Q9HCF6 1732 aaPredicted RBP16.62■□□□□ 0.25
HPS4-214ENST00000485842 HSPA5P11021 654 aaKnown RBP16.61■□□□□ 0.25
HPS4-214ENST00000485842 CABP1Q9NZU7 370 aa16.61■□□□□ 0.25
HPS4-214ENST00000485842 ACEP12821 1306 aa16.61■□□□□ 0.25
HPS4-214ENST00000485842 TNS3Q68CZ2 1445 aa16.61■□□□□ 0.25
HPS4-214ENST00000485842 PLEKHG3A1L390 1219 aa16.6■□□□□ 0.25
HPS4-214ENST00000485842 TMF1P82094 1093 aa16.6■□□□□ 0.25
HPS4-214ENST00000485842 POLR3AO14802 1390 aaPredicted RBP16.6■□□□□ 0.25
HPS4-214ENST00000485842 SLC24A1O60721 1099 aa16.59■□□□□ 0.25
HPS4-214ENST00000485842 LMOD2Q6P5Q4 547 aa16.59■□□□□ 0.25
HPS4-214ENST00000485842 SPATA31A3Q5VYP0 1347 aa16.59■□□□□ 0.25
HPS4-214ENST00000485842 NUTM2BA6NNL0 878 aaPredicted RBP16.58■□□□□ 0.24
HPS4-214ENST00000485842 NUTM2EB1AL46 878 aaPredicted RBP16.58■□□□□ 0.24
HPS4-214ENST00000485842 NUTM2AQ8IVF1 878 aaPredicted RBP16.58■□□□□ 0.24
HPS4-214ENST00000485842 TMC1Q8TDI8 760 aa16.58■□□□□ 0.24
HPS4-214ENST00000485842 SPATA31A6Q5VVP1 1343 aa16.58■□□□□ 0.24
HPS4-214ENST00000485842 SBNO1A3KN83 1393 aa16.58■□□□□ 0.24
HPS4-214ENST00000485842 AKAP12Q02952 1782 aa16.57■□□□□ 0.24
HPS4-214ENST00000485842 LRP6O75581 1613 aa16.57■□□□□ 0.24
HPS4-214ENST00000485842 COL22A1Q8NFW1 1626 aaPredicted RBP16.57■□□□□ 0.24
HPS4-214ENST00000485842 PAK3O75914 559 aaPredicted RBP16.57■□□□□ 0.24
HPS4-214ENST00000485842 PLEKHG5O94827 1062 aa16.57■□□□□ 0.24
HPS4-214ENST00000485842 ALS2Q96Q42 1657 aa16.56■□□□□ 0.24
HPS4-214ENST00000485842 USP6P35125 1406 aa16.54■□□□□ 0.24
HPS4-214ENST00000485842 ARHGEF10O15013 1369 aa16.54■□□□□ 0.24
HPS4-214ENST00000485842 CDCA8Q53HL2 280 aa16.54■□□□□ 0.24
HPS4-214ENST00000485842 MEX3CQ5U5Q3 659 aaKnown RBP16.54■□□□□ 0.24
HPS4-214ENST00000485842 PUS7Q96PZ0 661 aaKnown RBP16.54■□□□□ 0.24
HPS4-214ENST00000485842 MON2Q7Z3U7 1717 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms