RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TERTO14746 1132 aaKnown RBP8.42□□□□□ -1.06
VPS50-216ENST00000484954 ATP13A2Q9NQ11 1180 aa8.42□□□□□ -1.06
VPS50-216ENST00000484954 PRDM9Q9NQV7 894 aa8.42□□□□□ -1.06
VPS50-216ENST00000484954 FAM160A2Q8N612 972 aaPredicted RBP8.41□□□□□ -1.06
VPS50-216ENST00000484954 SMPD1P17405 629 aa8.4□□□□□ -1.06
VPS50-216ENST00000484954 MAP2K5Q13163 448 aa8.4□□□□□ -1.06
VPS50-216ENST00000484954 RSPH4AQ5TD94 716 aa8.4□□□□□ -1.06
VPS50-216ENST00000484954 RDH13Q8NBN7 331 aa8.4□□□□□ -1.06
VPS50-216ENST00000484954 IRF6O14896 467 aa8.39□□□□□ -1.07
VPS50-216ENST00000484954 ZBTB24O43167 697 aaPredicted RBP8.39□□□□□ -1.07
VPS50-216ENST00000484954 MORN1Q5T089 497 aa8.39□□□□□ -1.07
VPS50-216ENST00000484954 ZC3H15Q8WU90 426 aaKnown RBP8.39□□□□□ -1.07
VPS50-216ENST00000484954 THAP11Q96EK4 314 aa8.39□□□□□ -1.07
VPS50-216ENST00000484954 FUT2Q10981 343 aa8.38□□□□□ -1.07
VPS50-216ENST00000484954 CCDC102AQ96A19 550 aa8.38□□□□□ -1.07
VPS50-216ENST00000484954 J3QL48 77 aa8.37□□□□□ -1.07
VPS50-216ENST00000484954 FMNL1O95466 1100 aaPredicted RBP8.37□□□□□ -1.07
VPS50-216ENST00000484954 SLC27A5Q9Y2P5 690 aa8.37□□□□□ -1.07
VPS50-216ENST00000484954 SNIP1Q8TAD8 396 aaKnown RBP8.36□□□□□ -1.07
VPS50-216ENST00000484954 TRIM47Q96LD4 638 aa8.36□□□□□ -1.07
VPS50-216ENST00000484954 MINK1Q8N4C8 1332 aaPredicted RBP8.35□□□□□ -1.07
VPS50-216ENST00000484954 WNT7AO00755 349 aa8.35□□□□□ -1.07
VPS50-216ENST00000484954 ZMYND10O75800 440 aa8.35□□□□□ -1.07
VPS50-216ENST00000484954 SENP2Q9HC62 589 aa8.35□□□□□ -1.07
VPS50-216ENST00000484954 DAXXQ9UER7 740 aaPredicted RBP8.35□□□□□ -1.07
VPS50-216ENST00000484954 DDX11L8A8MPP1 907 aa8.34□□□□□ -1.07
VPS50-216ENST00000484954 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
VPS50-216ENST00000484954 ATP6V1AP38606 617 aa8.34□□□□□ -1.07
VPS50-216ENST00000484954 BARGINQ6ZT62 677 aa8.34□□□□□ -1.07
VPS50-216ENST00000484954 HPS1Q92902 700 aa8.34□□□□□ -1.07
VPS50-216ENST00000484954 MRGPRX2Q96LB1 330 aa8.34□□□□□ -1.07
VPS50-216ENST00000484954 MDM2Q00987 491 aaPredicted RBP8.32□□□□□ -1.08
VPS50-216ENST00000484954 TRIM32Q13049 653 aa8.32□□□□□ -1.08
VPS50-216ENST00000484954 BRICD5Q6PL45 260 aa8.32□□□□□ -1.08
VPS50-216ENST00000484954 RNF19BQ6ZMZ0 732 aa8.32□□□□□ -1.08
VPS50-216ENST00000484954 REPIN1Q9BWE0 567 aaKnown RBP8.3□□□□□ -1.08
VPS50-216ENST00000484954 FAM181BA6NEQ2 426 aa8.29□□□□□ -1.08
VPS50-216ENST00000484954 GMPRP36959 345 aa8.29□□□□□ -1.08
VPS50-216ENST00000484954 KRI1Q8N9T8 703 aaKnown RBP8.29□□□□□ -1.08
VPS50-216ENST00000484954 SLC16A10Q8TF71 515 aa8.29□□□□□ -1.08
VPS50-216ENST00000484954 KIFC2Q96AC6 838 aa8.29□□□□□ -1.08
VPS50-216ENST00000484954 MSS51Q4VC12 460 aa8.28□□□□□ -1.08
VPS50-216ENST00000484954 GCGRP47871 477 aa8.27□□□□□ -1.09
VPS50-216ENST00000484954 SALL2Q9Y467 1007 aaPredicted RBP8.27□□□□□ -1.09
VPS50-216ENST00000484954 CD46P15529 392 aa8.26□□□□□ -1.09
VPS50-216ENST00000484954 VEGFBP49765 207 aa8.26□□□□□ -1.09
VPS50-216ENST00000484954 SULF1Q8IWU6 871 aa8.26□□□□□ -1.09
VPS50-216ENST00000484954 ZSCAN1Q8NBB4 408 aa8.26□□□□□ -1.09
VPS50-216ENST00000484954 BCANQ96GW7 911 aa8.26□□□□□ -1.09
VPS50-216ENST00000484954 CCDC24Q8N4L8 307 aa8.25□□□□□ -1.09
VPS50-216ENST00000484954 NXF1Q9UBU9 619 aaKnown RBP8.25□□□□□ -1.09
VPS50-216ENST00000484954 RC3H1Q5TC82 1133 aaKnown RBP8.24□□□□□ -1.09
VPS50-216ENST00000484954 GPCPD1Q9NPB8 672 aa8.24□□□□□ -1.09
VPS50-216ENST00000484954 FAM217BQ9NTX9 383 aaPredicted RBP8.24□□□□□ -1.09
VPS50-216ENST00000484954 ALDH1A1P00352 501 aa8.23□□□□□ -1.09
VPS50-216ENST00000484954 BMP1P13497 986 aa8.23□□□□□ -1.09
VPS50-216ENST00000484954 SKOR1P84550 965 aa8.23□□□□□ -1.09
VPS50-216ENST00000484954 CLCN1P35523 988 aa8.22□□□□□ -1.09
VPS50-216ENST00000484954 AMHR2Q16671 573 aa8.22□□□□□ -1.09
VPS50-216ENST00000484954 HLA-CQ95604 372 aa8.22□□□□□ -1.09
VPS50-216ENST00000484954 SLC24A3Q9HC58 644 aa8.22□□□□□ -1.09
VPS50-216ENST00000484954 TRIM66O15016 1216 aa8.21□□□□□ -1.1
VPS50-216ENST00000484954 MMP16P51512 607 aa8.21□□□□□ -1.1
VPS50-216ENST00000484954 IRF7Q92985 503 aa8.21□□□□□ -1.1
VPS50-216ENST00000484954 KRTAP4-8Q9BYQ9 185 aa8.21□□□□□ -1.1
VPS50-216ENST00000484954 TTLL12Q14166 644 aaPredicted RBP8.2□□□□□ -1.1
VPS50-216ENST00000484954 GRIPAP1Q4V328 841 aa8.2□□□□□ -1.1
VPS50-216ENST00000484954 TRIM46Q7Z4K8 759 aa8.2□□□□□ -1.1
VPS50-216ENST00000484954 Q3C1V9 767 aa8.19□□□□□ -1.1
VPS50-216ENST00000484954 PARP9Q8IXQ6 854 aa8.19□□□□□ -1.1
VPS50-216ENST00000484954 AK7Q96M32 723 aa8.19□□□□□ -1.1
VPS50-216ENST00000484954 SSTR3P32745 418 aaPredicted RBP8.18□□□□□ -1.1
VPS50-216ENST00000484954 GIGYF2Q6Y7W6 1299 aaKnown RBP8.18□□□□□ -1.1
VPS50-216ENST00000484954 USB1Q9BQ65 265 aaKnown RBP8.18□□□□□ -1.1
VPS50-216ENST00000484954 ERBB4Q15303 1308 aa8.18□□□□□ -1.1
VPS50-216ENST00000484954 KDM4AO75164 1064 aa8.17□□□□□ -1.1
VPS50-216ENST00000484954 DXOO77932 396 aaKnown RBP8.17□□□□□ -1.1
VPS50-216ENST00000484954 GUCA2AQ02747 115 aa8.17□□□□□ -1.1
VPS50-216ENST00000484954 H3BM21 787 aa8.16□□□□□ -1.1
VPS50-216ENST00000484954 CAPN5O15484 640 aaPredicted RBP8.16□□□□□ -1.1
VPS50-216ENST00000484954 WNT7BP56706 349 aa8.16□□□□□ -1.1
VPS50-216ENST00000484954 HOXA2O43364 376 aa8.15□□□□□ -1.1
VPS50-216ENST00000484954 MS4A1P11836 297 aa8.15□□□□□ -1.1
VPS50-216ENST00000484954 PDE4DQ08499 809 aa8.14□□□□□ -1.11
VPS50-216ENST00000484954 WASF2Q9Y6W5 498 aa8.14□□□□□ -1.11
VPS50-216ENST00000484954 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.13□□□□□ -1.11
VPS50-216ENST00000484954 GSK3AP49840 483 aa8.13□□□□□ -1.11
VPS50-216ENST00000484954 NPAS3Q8IXF0 933 aa8.13□□□□□ -1.11
VPS50-216ENST00000484954 EHBP1Q8NDI1 1231 aa8.12□□□□□ -1.11
VPS50-216ENST00000484954 SPIRE2Q8WWL2 714 aa8.12□□□□□ -1.11
VPS50-216ENST00000484954 USP46P62068 366 aa8.11□□□□□ -1.11
VPS50-216ENST00000484954 NUTM1Q86Y26 1132 aa8.11□□□□□ -1.11
VPS50-216ENST00000484954 ZFP42Q96MM3 310 aa8.11□□□□□ -1.11
VPS50-216ENST00000484954 BEGAINQ9BUH8 593 aa8.11□□□□□ -1.11
VPS50-216ENST00000484954 SIAH2O43255 324 aa8.1□□□□□ -1.11
VPS50-216ENST00000484954 NDUFV2P19404 249 aa8.1□□□□□ -1.11
VPS50-216ENST00000484954 PTCRAQ6ISU1 281 aaPredicted RBP8.1□□□□□ -1.11
VPS50-216ENST00000484954 SYMPKQ92797 1274 aaKnown RBP8.1□□□□□ -1.11
VPS50-216ENST00000484954 PCDHGC3Q9UN70 934 aa8.1□□□□□ -1.11
VPS50-216ENST00000484954 MOXD2PA6NHM9 499 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms