RNA–Protein interactions for RNA: ENST00000482192.5

HMGN1-213, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 793 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-213ENST00000482192 ADGRB1O14514 1584 aa17.29■□□□□ 0.36
HMGN1-213ENST00000482192 ILDR2Q71H61 639 aa17.29■□□□□ 0.36
HMGN1-213ENST00000482192 NHSL1Q5SYE7 1610 aa17.29■□□□□ 0.36
HMGN1-213ENST00000482192 DLC1Q96QB1 1528 aa17.27■□□□□ 0.36
HMGN1-213ENST00000482192 SPATA31A6Q5VVP1 1343 aa17.25■□□□□ 0.35
HMGN1-213ENST00000482192 TRIM26Q12899 539 aaPredicted RBP17.25■□□□□ 0.35
HMGN1-213ENST00000482192 SHPRHQ149N8 1683 aa17.25■□□□□ 0.35
HMGN1-213ENST00000482192 PRAM1Q96QH2 718 aa17.24■□□□□ 0.35
HMGN1-213ENST00000482192 ORAI2Q96SN7 254 aa17.24■□□□□ 0.35
HMGN1-213ENST00000482192 LRRC59Q96AG4 307 aaKnown RBP17.23■□□□□ 0.35
HMGN1-213ENST00000482192 DDX17Q92841 729 aaKnown RBP17.22■□□□□ 0.35
HMGN1-213ENST00000482192 POGKQ9P215 609 aa17.22■□□□□ 0.35
HMGN1-213ENST00000482192 FMN2Q9NZ56 1722 aa17.21■□□□□ 0.35
HMGN1-213ENST00000482192 ESCO1Q5FWF5 840 aa17.21■□□□□ 0.35
HMGN1-213ENST00000482192 TRAK1Q9UPV9 953 aa17.21■□□□□ 0.35
HMGN1-213ENST00000482192 LRP6O75581 1613 aa17.2■□□□□ 0.34
HMGN1-213ENST00000482192 SOS2Q07890 1332 aaPredicted RBP17.2■□□□□ 0.34
HMGN1-213ENST00000482192 SAFB2Q14151 953 aaKnown RBP eCLIP17.19■□□□□ 0.34
HMGN1-213ENST00000482192 ADGRB2O60241 1585 aa17.19■□□□□ 0.34
HMGN1-213ENST00000482192 NPHP3Q7Z494 1330 aa17.19■□□□□ 0.34
HMGN1-213ENST00000482192 KIAA1210Q9ULL0 1709 aa17.18■□□□□ 0.34
HMGN1-213ENST00000482192 NUTM2FA1L443 756 aa17.18■□□□□ 0.34
HMGN1-213ENST00000482192 RGS17Q9UGC6 210 aaPredicted RBP17.18■□□□□ 0.34
HMGN1-213ENST00000482192 PNPLA6Q8IY17 1366 aa17.17■□□□□ 0.34
HMGN1-213ENST00000482192 SIN3AQ96ST3 1273 aa17.17■□□□□ 0.34
HMGN1-213ENST00000482192 SOCS7O14512 581 aa17.16■□□□□ 0.34
HMGN1-213ENST00000482192 MEX3CQ5U5Q3 659 aaKnown RBP17.16■□□□□ 0.34
HMGN1-213ENST00000482192 KIF1AQ12756 1690 aa17.16■□□□□ 0.34
HMGN1-213ENST00000482192 L3MBTL2Q969R5 705 aa17.15■□□□□ 0.34
HMGN1-213ENST00000482192 PXDNQ92626 1479 aa17.15■□□□□ 0.34
HMGN1-213ENST00000482192 ANKARQ7Z5J8 1434 aa17.14■□□□□ 0.33
HMGN1-213ENST00000482192 ARHGEF28Q8N1W1 1705 aaKnown RBP17.14■□□□□ 0.33
HMGN1-213ENST00000482192 NUTM2BA6NNL0 878 aaPredicted RBP17.14■□□□□ 0.33
HMGN1-213ENST00000482192 NUTM2EB1AL46 878 aaPredicted RBP17.14■□□□□ 0.33
HMGN1-213ENST00000482192 FOXO3O43524 673 aa17.14■□□□□ 0.33
HMGN1-213ENST00000482192 NEUROD1Q13562 356 aa17.14■□□□□ 0.33
HMGN1-213ENST00000482192 NUTM2AQ8IVF1 878 aaPredicted RBP17.14■□□□□ 0.33
HMGN1-213ENST00000482192 EIF3AQ14152 1382 aaKnown RBP17.14■□□□□ 0.33
HMGN1-213ENST00000482192 MINK1Q8N4C8 1332 aaPredicted RBP17.13■□□□□ 0.33
HMGN1-213ENST00000482192 HIRIP3Q9BW71 556 aaPredicted RBP17.12■□□□□ 0.33
HMGN1-213ENST00000482192 NBPF1Q3BBV0 1214 aa17.11■□□□□ 0.33
HMGN1-213ENST00000482192 PHF8Q9UPP1 1060 aa17.11■□□□□ 0.33
HMGN1-213ENST00000482192 XPCQ01831 940 aaPredicted RBP17.1■□□□□ 0.33
HMGN1-213ENST00000482192 TULP4Q9NRJ4 1543 aa17.1■□□□□ 0.33
HMGN1-213ENST00000482192 USP32Q8NFA0 1604 aa17.1■□□□□ 0.33
HMGN1-213ENST00000482192 COL22A1Q8NFW1 1626 aaPredicted RBP17.1■□□□□ 0.33
HMGN1-213ENST00000482192 WASLO00401 505 aaPredicted RBP17.09■□□□□ 0.33
HMGN1-213ENST00000482192 ZNF772Q68DY9 489 aaPredicted RBP17.09■□□□□ 0.33
HMGN1-213ENST00000482192 POTEAQ6S8J7 498 aa17.09■□□□□ 0.33
HMGN1-213ENST00000482192 RGPD8O14715 1765 aaPredicted RBP17.07■□□□□ 0.32
HMGN1-213ENST00000482192 PSME1Q06323 249 aa17.06■□□□□ 0.32
HMGN1-213ENST00000482192 KRT28Q7Z3Y7 464 aa17.06■□□□□ 0.32
HMGN1-213ENST00000482192 TRPM1Q7Z4N2 1603 aa17.06■□□□□ 0.32
HMGN1-213ENST00000482192 SPATA31A3Q5VYP0 1347 aa17.05■□□□□ 0.32
HMGN1-213ENST00000482192 PRR36Q9H6K5 1346 aa17.05■□□□□ 0.32
HMGN1-213ENST00000482192 ADAMTS2O95450 1211 aa17.05■□□□□ 0.32
HMGN1-213ENST00000482192 C8orf37Q96NL8 207 aa17.05■□□□□ 0.32
HMGN1-213ENST00000482192 TONSLQ96HA7 1378 aa17.04■□□□□ 0.32
HMGN1-213ENST00000482192 AFF2P51816 1311 aa17.04■□□□□ 0.32
HMGN1-213ENST00000482192 TNS3Q68CZ2 1445 aa17.04■□□□□ 0.32
HMGN1-213ENST00000482192 SBNO1A3KN83 1393 aa17.03■□□□□ 0.32
HMGN1-213ENST00000482192 ROCK2O75116 1388 aaKnown RBP17.03■□□□□ 0.32
HMGN1-213ENST00000482192 CENPJQ9HC77 1338 aaPredicted RBP17.03■□□□□ 0.32
HMGN1-213ENST00000482192 PMFBP1Q8TBY8 1022 aa17.03■□□□□ 0.32
HMGN1-213ENST00000482192 ATP7BP35670 1465 aa17.03■□□□□ 0.32
HMGN1-213ENST00000482192 GPRASP1Q5JY77 1395 aa17.02■□□□□ 0.31
HMGN1-213ENST00000482192 NUDT16Q96DE0 195 aaKnown RBP17.01■□□□□ 0.31
HMGN1-213ENST00000482192 NGLY1Q96IV0 654 aa17.01■□□□□ 0.31
HMGN1-213ENST00000482192 CDK19Q9BWU1 502 aa17.01■□□□□ 0.31
HMGN1-213ENST00000482192 ITSN1Q15811 1721 aa17.01■□□□□ 0.31
HMGN1-213ENST00000482192 ARHGEF10O15013 1369 aa17.01■□□□□ 0.31
HMGN1-213ENST00000482192 NGDNQ8NEJ9 315 aaKnown RBP16.99■□□□□ 0.31
HMGN1-213ENST00000482192 QRICH2Q9H0J4 1663 aa16.99■□□□□ 0.31
HMGN1-213ENST00000482192 NBPF8Q3BBV2 869 aa16.98■□□□□ 0.31
HMGN1-213ENST00000482192 TRPM3Q9HCF6 1732 aaPredicted RBP16.97■□□□□ 0.31
HMGN1-213ENST00000482192 RXRBP28702 533 aa16.97■□□□□ 0.31
HMGN1-213ENST00000482192 LMOD2Q6P5Q4 547 aa16.97■□□□□ 0.31
HMGN1-213ENST00000482192 CCDC61Q9Y6R9 512 aa16.97■□□□□ 0.31
HMGN1-213ENST00000482192 TOPAZ1Q8N9V7 1692 aa16.97■□□□□ 0.31
HMGN1-213ENST00000482192 SRPK2P78362 688 aaKnown RBP16.96■□□□□ 0.31
HMGN1-213ENST00000482192 FNBP4Q8N3X1 1017 aaPredicted RBP16.96■□□□□ 0.31
HMGN1-213ENST00000482192 RALGAPBQ86X10 1494 aa16.95■□□□□ 0.3
HMGN1-213ENST00000482192 HAP1P54257 671 aaPredicted RBP16.95■□□□□ 0.3
HMGN1-213ENST00000482192 USP21Q9UK80 565 aa16.95■□□□□ 0.3
HMGN1-213ENST00000482192 MARF1Q9Y4F3 1742 aaKnown RBP16.95■□□□□ 0.3
HMGN1-213ENST00000482192 CDK12Q9NYV4 1490 aaPredicted RBP16.94■□□□□ 0.3
HMGN1-213ENST00000482192 POLR3AO14802 1390 aaPredicted RBP16.94■□□□□ 0.3
HMGN1-213ENST00000482192 QTRT2Q9H974 415 aaKnown RBP16.94■□□□□ 0.3
HMGN1-213ENST00000482192 PLEKHG3A1L390 1219 aa16.93■□□□□ 0.3
HMGN1-213ENST00000482192 ALS2Q96Q42 1657 aa16.93■□□□□ 0.3
HMGN1-213ENST00000482192 EVC2Q86UK5 1308 aa16.93■□□□□ 0.3
HMGN1-213ENST00000482192 RBM6P78332 1123 aaKnown RBP16.92■□□□□ 0.3
HMGN1-213ENST00000482192 CABLES1Q8TDN4 633 aa16.92■□□□□ 0.3
HMGN1-213ENST00000482192 CARD11Q9BXL7 1154 aa16.92■□□□□ 0.3
HMGN1-213ENST00000482192 PCGF6Q9BYE7 350 aa16.92■□□□□ 0.3
HMGN1-213ENST00000482192 CABP2Q9NPB3 220 aa16.92■□□□□ 0.3
HMGN1-213ENST00000482192 TRPC5Q9UL62 973 aaPredicted RBP16.92■□□□□ 0.3
HMGN1-213ENST00000482192 PPIP5K1Q6PFW1 1433 aa16.92■□□□□ 0.3
HMGN1-213ENST00000482192 ABCA3Q99758 1704 aa16.92■□□□□ 0.3
HMGN1-213ENST00000482192 ACEP12821 1306 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms