RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 C14orf93Q9H972 538 aaKnown RBP21.9■■□□□ 1.1
LIMS4-202ENST00000480598 ORAI2Q96SN7 254 aa21.89■■□□□ 1.09
LIMS4-202ENST00000480598 CDC42BPGQ6DT37 1551 aa21.88■■□□□ 1.09
LIMS4-202ENST00000480598 POTEAQ6S8J7 498 aa21.88■■□□□ 1.09
LIMS4-202ENST00000480598 LAMC1P11047 1609 aa21.87■■□□□ 1.09
LIMS4-202ENST00000480598 NUTM2BA6NNL0 878 aaPredicted RBP21.84■■□□□ 1.09
LIMS4-202ENST00000480598 NUTM2EB1AL46 878 aaPredicted RBP21.84■■□□□ 1.09
LIMS4-202ENST00000480598 MEX3CQ5U5Q3 659 aaKnown RBP21.84■■□□□ 1.09
LIMS4-202ENST00000480598 NUTM2AQ8IVF1 878 aaPredicted RBP21.84■■□□□ 1.09
LIMS4-202ENST00000480598 LRRC59Q96AG4 307 aaKnown RBP21.84■■□□□ 1.09
LIMS4-202ENST00000480598 KDM2AQ9Y2K7 1162 aa21.83■■□□□ 1.09
LIMS4-202ENST00000480598 DHX57Q6P158 1386 aaKnown RBP21.83■■□□□ 1.08
LIMS4-202ENST00000480598 NUTM2FA1L443 756 aa21.82■■□□□ 1.08
LIMS4-202ENST00000480598 PNPLA6Q8IY17 1366 aa21.82■■□□□ 1.08
LIMS4-202ENST00000480598 DCAF11Q8TEB1 546 aa21.81■■□□□ 1.08
LIMS4-202ENST00000480598 ESCO1Q5FWF5 840 aa21.8■■□□□ 1.08
LIMS4-202ENST00000480598 SOS2Q07890 1332 aaPredicted RBP21.8■■□□□ 1.08
LIMS4-202ENST00000480598 SIRT1Q96EB6 747 aa21.79■■□□□ 1.08
LIMS4-202ENST00000480598 ADGRB1O14514 1584 aa21.78■■□□□ 1.08
LIMS4-202ENST00000480598 FMN2Q9NZ56 1722 aa21.78■■□□□ 1.08
LIMS4-202ENST00000480598 SAFB2Q14151 953 aaKnown RBP eCLIP21.77■■□□□ 1.08
LIMS4-202ENST00000480598 PRAM1Q96QH2 718 aa21.77■■□□□ 1.08
LIMS4-202ENST00000480598 DLC1Q96QB1 1528 aa21.75■■□□□ 1.07
LIMS4-202ENST00000480598 FOXO3O43524 673 aa21.74■■□□□ 1.07
LIMS4-202ENST00000480598 XPCQ01831 940 aaPredicted RBP21.74■■□□□ 1.07
LIMS4-202ENST00000480598 NPHP3Q7Z494 1330 aa21.74■■□□□ 1.07
LIMS4-202ENST00000480598 PXDNQ92626 1479 aa21.73■■□□□ 1.07
LIMS4-202ENST00000480598 TRAK1Q9UPV9 953 aa21.73■■□□□ 1.07
LIMS4-202ENST00000480598 ZNF772Q68DY9 489 aaPredicted RBP21.72■■□□□ 1.07
LIMS4-202ENST00000480598 POGKQ9P215 609 aa21.72■■□□□ 1.07
LIMS4-202ENST00000480598 STAC3Q96MF2 364 aa21.71■■□□□ 1.07
LIMS4-202ENST00000480598 AFF2P51816 1311 aa21.71■■□□□ 1.07
LIMS4-202ENST00000480598 RGPD8O14715 1765 aaPredicted RBP21.7■■□□□ 1.06
LIMS4-202ENST00000480598 C8orf37Q96NL8 207 aa21.7■■□□□ 1.06
LIMS4-202ENST00000480598 ADAMTS2O95450 1211 aa21.69■■□□□ 1.06
LIMS4-202ENST00000480598 COL22A1Q8NFW1 1626 aaPredicted RBP21.68■■□□□ 1.06
LIMS4-202ENST00000480598 KIF1AQ12756 1690 aa21.68■■□□□ 1.06
LIMS4-202ENST00000480598 ADGRB2O60241 1585 aa21.66■■□□□ 1.06
LIMS4-202ENST00000480598 HIRIP3Q9BW71 556 aaPredicted RBP21.66■■□□□ 1.06
LIMS4-202ENST00000480598 MINK1Q8N4C8 1332 aaPredicted RBP21.65■■□□□ 1.06
LIMS4-202ENST00000480598 PHF8Q9UPP1 1060 aa21.65■■□□□ 1.06
LIMS4-202ENST00000480598 USP32Q8NFA0 1604 aa21.64■■□□□ 1.05
LIMS4-202ENST00000480598 ARHGEF28Q8N1W1 1705 aaKnown RBP21.63■■□□□ 1.05
LIMS4-202ENST00000480598 KRT28Q7Z3Y7 464 aa21.62■■□□□ 1.05
LIMS4-202ENST00000480598 NGLY1Q96IV0 654 aa21.62■■□□□ 1.05
LIMS4-202ENST00000480598 RXRBP28702 533 aa21.61■■□□□ 1.05
LIMS4-202ENST00000480598 ANKARQ7Z5J8 1434 aa21.61■■□□□ 1.05
LIMS4-202ENST00000480598 SPATA31A3Q5VYP0 1347 aa21.6■■□□□ 1.05
LIMS4-202ENST00000480598 PMFBP1Q8TBY8 1022 aa21.59■■□□□ 1.05
LIMS4-202ENST00000480598 KIAA1210Q9ULL0 1709 aa21.59■■□□□ 1.05
LIMS4-202ENST00000480598 PRR36Q9H6K5 1346 aa21.58■■□□□ 1.05
LIMS4-202ENST00000480598 SIN3AQ96ST3 1273 aa21.58■■□□□ 1.05
LIMS4-202ENST00000480598 QTRT2Q9H974 415 aaKnown RBP21.58■■□□□ 1.05
LIMS4-202ENST00000480598 TULP4Q9NRJ4 1543 aa21.57■■□□□ 1.04
LIMS4-202ENST00000480598 WASLO00401 505 aaPredicted RBP21.57■■□□□ 1.04
LIMS4-202ENST00000480598 NBPF1Q3BBV0 1214 aa21.57■■□□□ 1.04
LIMS4-202ENST00000480598 TNS3Q68CZ2 1445 aa21.56■■□□□ 1.04
LIMS4-202ENST00000480598 MARF1Q9Y4F3 1742 aaKnown RBP21.55■■□□□ 1.04
LIMS4-202ENST00000480598 PSME1Q06323 249 aa21.55■■□□□ 1.04
LIMS4-202ENST00000480598 USP21Q9UK80 565 aa21.55■■□□□ 1.04
LIMS4-202ENST00000480598 EIF3AQ14152 1382 aaKnown RBP21.55■■□□□ 1.04
LIMS4-202ENST00000480598 FNBP4Q8N3X1 1017 aaPredicted RBP21.54■■□□□ 1.04
LIMS4-202ENST00000480598 L3MBTL2Q969R5 705 aa21.54■■□□□ 1.04
LIMS4-202ENST00000480598 CDK12Q9NYV4 1490 aaPredicted RBP21.53■■□□□ 1.04
LIMS4-202ENST00000480598 RBM6P78332 1123 aaKnown RBP21.53■■□□□ 1.04
LIMS4-202ENST00000480598 SBNO1A3KN83 1393 aa21.52■■□□□ 1.04
LIMS4-202ENST00000480598 PLEKHG5O94827 1062 aa21.52■■□□□ 1.04
LIMS4-202ENST00000480598 NEUROD1Q13562 356 aa21.52■■□□□ 1.04
LIMS4-202ENST00000480598 RGS12O14924 1447 aa21.52■■□□□ 1.04
LIMS4-202ENST00000480598 LMOD2Q6P5Q4 547 aa21.51■■□□□ 1.03
LIMS4-202ENST00000480598 CABLES1Q8TDN4 633 aa21.5■■□□□ 1.03
LIMS4-202ENST00000480598 ATP7BP35670 1465 aa21.5■■□□□ 1.03
LIMS4-202ENST00000480598 TRPM3Q9HCF6 1732 aaPredicted RBP21.49■■□□□ 1.03
LIMS4-202ENST00000480598 ATRNO75882 1429 aa21.49■■□□□ 1.03
LIMS4-202ENST00000480598 TRPC5Q9UL62 973 aaPredicted RBP21.49■■□□□ 1.03
LIMS4-202ENST00000480598 BCL9LQ86UU0 1499 aa21.48■■□□□ 1.03
LIMS4-202ENST00000480598 ABCA3Q99758 1704 aa21.47■■□□□ 1.03
LIMS4-202ENST00000480598 HAP1P54257 671 aaPredicted RBP21.47■■□□□ 1.03
LIMS4-202ENST00000480598 NUDT16Q96DE0 195 aaKnown RBP21.47■■□□□ 1.03
LIMS4-202ENST00000480598 CDK19Q9BWU1 502 aa21.47■■□□□ 1.03
LIMS4-202ENST00000480598 ARHGEF10O15013 1369 aa21.47■■□□□ 1.03
LIMS4-202ENST00000480598 GPRASP1Q5JY77 1395 aa21.47■■□□□ 1.03
LIMS4-202ENST00000480598 ITSN1Q15811 1721 aa21.46■■□□□ 1.03
LIMS4-202ENST00000480598 NGDNQ8NEJ9 315 aaKnown RBP21.46■■□□□ 1.03
LIMS4-202ENST00000480598 TRPM1Q7Z4N2 1603 aa21.44■■□□□ 1.02
LIMS4-202ENST00000480598 ALS2Q96Q42 1657 aa21.44■■□□□ 1.02
LIMS4-202ENST00000480598 UPF1Q92900 1129 aaKnown RBP eCLIP21.44■■□□□ 1.02
LIMS4-202ENST00000480598 SLIT2O94813 1529 aa21.44■■□□□ 1.02
LIMS4-202ENST00000480598 CENPJQ9HC77 1338 aaPredicted RBP21.43■■□□□ 1.02
LIMS4-202ENST00000480598 TOPAZ1Q8N9V7 1692 aa21.42■■□□□ 1.02
LIMS4-202ENST00000480598 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.41■■□□□ 1.02
LIMS4-202ENST00000480598 QRICH2Q9H0J4 1663 aa21.41■■□□□ 1.02
LIMS4-202ENST00000480598 TRIM26Q12899 539 aaPredicted RBP21.41■■□□□ 1.02
LIMS4-202ENST00000480598 UNC5CLQ8IV45 518 aa21.41■■□□□ 1.02
LIMS4-202ENST00000480598 PAK3O75914 559 aaPredicted RBP21.4■■□□□ 1.02
LIMS4-202ENST00000480598 CCDC61Q9Y6R9 512 aa21.39■■□□□ 1.01
LIMS4-202ENST00000480598 PLCH1Q4KWH8 1693 aa21.38■■□□□ 1.01
LIMS4-202ENST00000480598 GJD4Q96KN9 370 aaPredicted RBP21.38■■□□□ 1.01
LIMS4-202ENST00000480598 ROCK2O75116 1388 aaKnown RBP21.37■■□□□ 1.01
LIMS4-202ENST00000480598 ACEP12821 1306 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms