RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 DCAF11Q8TEB1 546 aa31.79■■■□□ 2.68
COL9A3-211ENST00000477612 ADGRB1O14514 1584 aa31.77■■■□□ 2.68
COL9A3-211ENST00000477612 PLEKHH1Q9ULM0 1364 aa31.77■■■□□ 2.68
COL9A3-211ENST00000477612 SPATA31A6Q5VVP1 1343 aa31.76■■■□□ 2.68
COL9A3-211ENST00000477612 DLC1Q96QB1 1528 aa31.75■■■□□ 2.67
COL9A3-211ENST00000477612 RGS17Q9UGC6 210 aaPredicted RBP31.74■■■□□ 2.67
COL9A3-211ENST00000477612 KDM2AQ9Y2K7 1162 aa31.74■■■□□ 2.67
COL9A3-211ENST00000477612 SOCS7O14512 581 aa31.73■■■□□ 2.67
COL9A3-211ENST00000477612 ORAI2Q96SN7 254 aa31.73■■■□□ 2.67
COL9A3-211ENST00000477612 FMN2Q9NZ56 1722 aa31.72■■■□□ 2.67
COL9A3-211ENST00000477612 LRRC59Q96AG4 307 aaKnown RBP31.71■■■□□ 2.67
COL9A3-211ENST00000477612 DDX17Q92841 729 aaKnown RBP31.68■■■□□ 2.66
COL9A3-211ENST00000477612 SOS2Q07890 1332 aaPredicted RBP31.67■■■□□ 2.66
COL9A3-211ENST00000477612 LRP6O75581 1613 aa31.67■■■□□ 2.66
COL9A3-211ENST00000477612 KIAA1210Q9ULL0 1709 aa31.65■■■□□ 2.66
COL9A3-211ENST00000477612 PRAM1Q96QH2 718 aa31.63■■■□□ 2.65
COL9A3-211ENST00000477612 RGPD8O14715 1765 aaPredicted RBP31.62■■■□□ 2.65
COL9A3-211ENST00000477612 ESCO1Q5FWF5 840 aa31.61■■■□□ 2.65
COL9A3-211ENST00000477612 PNPLA6Q8IY17 1366 aa31.6■■■□□ 2.65
COL9A3-211ENST00000477612 ADGRB2O60241 1585 aa31.6■■■□□ 2.65
COL9A3-211ENST00000477612 NPHP3Q7Z494 1330 aa31.58■■■□□ 2.65
COL9A3-211ENST00000477612 TRAK1Q9UPV9 953 aa31.58■■■□□ 2.65
COL9A3-211ENST00000477612 KIF1AQ12756 1690 aa31.57■■■□□ 2.65
COL9A3-211ENST00000477612 POGKQ9P215 609 aa31.57■■■□□ 2.64
COL9A3-211ENST00000477612 ARHGEF28Q8N1W1 1705 aaKnown RBP31.56■■■□□ 2.64
COL9A3-211ENST00000477612 NUTM2FA1L443 756 aa31.55■■■□□ 2.64
COL9A3-211ENST00000477612 POTEAQ6S8J7 498 aa31.55■■■□□ 2.64
COL9A3-211ENST00000477612 PXDNQ92626 1479 aa31.54■■■□□ 2.64
COL9A3-211ENST00000477612 SAFB2Q14151 953 aaKnown RBP eCLIP31.53■■■□□ 2.64
COL9A3-211ENST00000477612 COL22A1Q8NFW1 1626 aaPredicted RBP31.53■■■□□ 2.64
COL9A3-211ENST00000477612 TRIM26Q12899 539 aaPredicted RBP31.52■■■□□ 2.64
COL9A3-211ENST00000477612 FOXO3O43524 673 aa31.51■■■□□ 2.63
COL9A3-211ENST00000477612 USP32Q8NFA0 1604 aa31.5■■■□□ 2.63
COL9A3-211ENST00000477612 MEX3CQ5U5Q3 659 aaKnown RBP31.5■■■□□ 2.63
COL9A3-211ENST00000477612 NUTM2BA6NNL0 878 aaPredicted RBP31.49■■■□□ 2.63
COL9A3-211ENST00000477612 NUTM2EB1AL46 878 aaPredicted RBP31.49■■■□□ 2.63
COL9A3-211ENST00000477612 NUTM2AQ8IVF1 878 aaPredicted RBP31.49■■■□□ 2.63
COL9A3-211ENST00000477612 SIN3AQ96ST3 1273 aa31.49■■■□□ 2.63
COL9A3-211ENST00000477612 ANKARQ7Z5J8 1434 aa31.49■■■□□ 2.63
COL9A3-211ENST00000477612 L3MBTL2Q969R5 705 aa31.46■■■□□ 2.63
COL9A3-211ENST00000477612 ZNF772Q68DY9 489 aaPredicted RBP31.45■■■□□ 2.63
COL9A3-211ENST00000477612 PHF8Q9UPP1 1060 aa31.44■■■□□ 2.62
COL9A3-211ENST00000477612 NBPF1Q3BBV0 1214 aa31.43■■■□□ 2.62
COL9A3-211ENST00000477612 MINK1Q8N4C8 1332 aaPredicted RBP31.42■■■□□ 2.62
COL9A3-211ENST00000477612 EIF3AQ14152 1382 aaKnown RBP31.42■■■□□ 2.62
COL9A3-211ENST00000477612 TULP4Q9NRJ4 1543 aa31.41■■■□□ 2.62
COL9A3-211ENST00000477612 WASLO00401 505 aaPredicted RBP31.41■■■□□ 2.62
COL9A3-211ENST00000477612 HIRIP3Q9BW71 556 aaPredicted RBP31.4■■■□□ 2.62
COL9A3-211ENST00000477612 XPCQ01831 940 aaPredicted RBP31.39■■■□□ 2.62
COL9A3-211ENST00000477612 KRT28Q7Z3Y7 464 aa31.38■■■□□ 2.61
COL9A3-211ENST00000477612 SPATA31A3Q5VYP0 1347 aa31.38■■■□□ 2.61
COL9A3-211ENST00000477612 MARF1Q9Y4F3 1742 aaKnown RBP31.37■■■□□ 2.61
COL9A3-211ENST00000477612 TRPM1Q7Z4N2 1603 aa31.36■■■□□ 2.61
COL9A3-211ENST00000477612 AFF2P51816 1311 aa31.36■■■□□ 2.61
COL9A3-211ENST00000477612 PRR36Q9H6K5 1346 aa31.36■■■□□ 2.61
COL9A3-211ENST00000477612 NEUROD1Q13562 356 aa31.36■■■□□ 2.61
COL9A3-211ENST00000477612 ITSN1Q15811 1721 aa31.33■■■□□ 2.61
COL9A3-211ENST00000477612 PSME1Q06323 249 aa31.33■■■□□ 2.61
COL9A3-211ENST00000477612 C8orf37Q96NL8 207 aa31.33■■■□□ 2.61
COL9A3-211ENST00000477612 SBNO1A3KN83 1393 aa31.32■■■□□ 2.6
COL9A3-211ENST00000477612 ADAMTS2O95450 1211 aa31.31■■■□□ 2.6
COL9A3-211ENST00000477612 PMFBP1Q8TBY8 1022 aa31.3■■■□□ 2.6
COL9A3-211ENST00000477612 TNS3Q68CZ2 1445 aa31.3■■■□□ 2.6
COL9A3-211ENST00000477612 TRPM3Q9HCF6 1732 aaPredicted RBP31.29■■■□□ 2.6
COL9A3-211ENST00000477612 ATP7BP35670 1465 aa31.28■■■□□ 2.6
COL9A3-211ENST00000477612 FNBP4Q8N3X1 1017 aaPredicted RBP31.27■■■□□ 2.6
COL9A3-211ENST00000477612 NGLY1Q96IV0 654 aa31.27■■■□□ 2.6
COL9A3-211ENST00000477612 CDK19Q9BWU1 502 aa31.25■■■□□ 2.59
COL9A3-211ENST00000477612 RXRBP28702 533 aa31.24■■■□□ 2.59
COL9A3-211ENST00000477612 NUDT16Q96DE0 195 aaKnown RBP31.24■■■□□ 2.59
COL9A3-211ENST00000477612 CDK12Q9NYV4 1490 aaPredicted RBP31.24■■■□□ 2.59
COL9A3-211ENST00000477612 TOPAZ1Q8N9V7 1692 aa31.24■■■□□ 2.59
COL9A3-211ENST00000477612 CENPJQ9HC77 1338 aaPredicted RBP31.24■■■□□ 2.59
COL9A3-211ENST00000477612 QRICH2Q9H0J4 1663 aa31.23■■■□□ 2.59
COL9A3-211ENST00000477612 ALS2Q96Q42 1657 aa31.22■■■□□ 2.59
COL9A3-211ENST00000477612 ARHGEF10O15013 1369 aa31.21■■■□□ 2.59
COL9A3-211ENST00000477612 QTRT2Q9H974 415 aaKnown RBP31.21■■■□□ 2.59
COL9A3-211ENST00000477612 GPRASP1Q5JY77 1395 aa31.2■■■□□ 2.59
COL9A3-211ENST00000477612 ABCA3Q99758 1704 aa31.2■■■□□ 2.58
COL9A3-211ENST00000477612 NBPF8Q3BBV2 869 aa31.19■■■□□ 2.58
COL9A3-211ENST00000477612 USP21Q9UK80 565 aa31.18■■■□□ 2.58
COL9A3-211ENST00000477612 CCDC61Q9Y6R9 512 aa31.18■■■□□ 2.58
COL9A3-211ENST00000477612 ROCK2O75116 1388 aaKnown RBP31.17■■■□□ 2.58
COL9A3-211ENST00000477612 RBM6P78332 1123 aaKnown RBP31.17■■■□□ 2.58
COL9A3-211ENST00000477612 NGDNQ8NEJ9 315 aaKnown RBP31.16■■■□□ 2.58
COL9A3-211ENST00000477612 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.15■■■□□ 2.58
COL9A3-211ENST00000477612 PLEKHG3A1L390 1219 aa31.15■■■□□ 2.58
COL9A3-211ENST00000477612 POLR3AO14802 1390 aaPredicted RBP31.15■■■□□ 2.58
COL9A3-211ENST00000477612 BCL9LQ86UU0 1499 aa31.14■■■□□ 2.58
COL9A3-211ENST00000477612 TONSLQ96HA7 1378 aa31.14■■■□□ 2.58
COL9A3-211ENST00000477612 TRPC5Q9UL62 973 aaPredicted RBP31.13■■■□□ 2.57
COL9A3-211ENST00000477612 ATRNO75882 1429 aa31.13■■■□□ 2.57
COL9A3-211ENST00000477612 SLIT2O94813 1529 aa31.12■■■□□ 2.57
COL9A3-211ENST00000477612 CRYBG1Q9Y4K1 1723 aa31.11■■■□□ 2.57
COL9A3-211ENST00000477612 LMOD2Q6P5Q4 547 aa31.1■■■□□ 2.57
COL9A3-211ENST00000477612 CABLES1Q8TDN4 633 aa31.1■■■□□ 2.57
COL9A3-211ENST00000477612 ACEP12821 1306 aa31.08■■■□□ 2.57
COL9A3-211ENST00000477612 NWD2Q9ULI1 1742 aa31.07■■■□□ 2.56
COL9A3-211ENST00000477612 SRPK2P78362 688 aaKnown RBP31.07■■■□□ 2.56
COL9A3-211ENST00000477612 RALGAPBQ86X10 1494 aa31.07■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms