RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 NBPF8Q3BBV2 869 aa13.97□□□□□ -0.17
HDAC3-208ENST00000476739 SIRT1Q96EB6 747 aa13.97□□□□□ -0.17
HDAC3-208ENST00000476739 PRAM1Q96QH2 718 aa13.97□□□□□ -0.17
HDAC3-208ENST00000476739 TONSLQ96HA7 1378 aa13.96□□□□□ -0.17
HDAC3-208ENST00000476739 TRPM1Q7Z4N2 1603 aa13.94□□□□□ -0.18
HDAC3-208ENST00000476739 ARHGEF28Q8N1W1 1705 aaKnown RBP13.94□□□□□ -0.18
HDAC3-208ENST00000476739 C1orf167Q5SNV9 1468 aa13.93□□□□□ -0.18
HDAC3-208ENST00000476739 CDC42BPGQ6DT37 1551 aa13.93□□□□□ -0.18
HDAC3-208ENST00000476739 BRINP3Q76B58 766 aa13.93□□□□□ -0.18
HDAC3-208ENST00000476739 POGKQ9P215 609 aa13.93□□□□□ -0.18
HDAC3-208ENST00000476739 NUTM2FA1L443 756 aa13.92□□□□□ -0.18
HDAC3-208ENST00000476739 CCER1Q8TC90 406 aaPredicted RBP13.91□□□□□ -0.18
HDAC3-208ENST00000476739 DDX17Q92841 729 aaKnown RBP13.91□□□□□ -0.18
HDAC3-208ENST00000476739 ORAI2Q96SN7 254 aa13.91□□□□□ -0.18
HDAC3-208ENST00000476739 HIRIP3Q9BW71 556 aaPredicted RBP13.91□□□□□ -0.18
HDAC3-208ENST00000476739 MINK1Q8N4C8 1332 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-208ENST00000476739 PHLPP1O60346 1717 aa13.9□□□□□ -0.18
HDAC3-208ENST00000476739 FMN2Q9NZ56 1722 aa13.9□□□□□ -0.18
HDAC3-208ENST00000476739 CLSPNQ9HAW4 1339 aa13.9□□□□□ -0.19
HDAC3-208ENST00000476739 ROCK2O75116 1388 aaKnown RBP13.89□□□□□ -0.19
HDAC3-208ENST00000476739 RGPD8O14715 1765 aaPredicted RBP13.88□□□□□ -0.19
HDAC3-208ENST00000476739 ADGRB2O60241 1585 aa13.88□□□□□ -0.19
HDAC3-208ENST00000476739 COL16A1Q07092 1604 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-208ENST00000476739 AHDC1Q5TGY3 1603 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-208ENST00000476739 USP32Q8NFA0 1604 aa13.86□□□□□ -0.19
HDAC3-208ENST00000476739 ESCO1Q5FWF5 840 aa13.86□□□□□ -0.19
HDAC3-208ENST00000476739 RALGAPBQ86X10 1494 aa13.86□□□□□ -0.19
HDAC3-208ENST00000476739 NHSL1Q5SYE7 1610 aa13.86□□□□□ -0.19
HDAC3-208ENST00000476739 GPRASP1Q5JY77 1395 aa13.85□□□□□ -0.19
HDAC3-208ENST00000476739 WASLO00401 505 aaPredicted RBP13.84□□□□□ -0.19
HDAC3-208ENST00000476739 PRR36Q9H6K5 1346 aa13.84□□□□□ -0.19
HDAC3-208ENST00000476739 CENPJQ9HC77 1338 aaPredicted RBP13.84□□□□□ -0.19
HDAC3-208ENST00000476739 QRICH2Q9H0J4 1663 aa13.83□□□□□ -0.2
HDAC3-208ENST00000476739 CARD11Q9BXL7 1154 aa13.83□□□□□ -0.2
HDAC3-208ENST00000476739 FOXO3O43524 673 aa13.82□□□□□ -0.2
HDAC3-208ENST00000476739 CDK19Q9BWU1 502 aa13.82□□□□□ -0.2
HDAC3-208ENST00000476739 TULP4Q9NRJ4 1543 aa13.81□□□□□ -0.2
HDAC3-208ENST00000476739 XPCQ01831 940 aaPredicted RBP13.81□□□□□ -0.2
HDAC3-208ENST00000476739 TIMELESSQ9UNS1 1208 aa13.81□□□□□ -0.2
HDAC3-208ENST00000476739 PMFBP1Q8TBY8 1022 aa13.8□□□□□ -0.2
HDAC3-208ENST00000476739 PHF8Q9UPP1 1060 aa13.8□□□□□ -0.2
HDAC3-208ENST00000476739 SOS2Q07890 1332 aaPredicted RBP13.8□□□□□ -0.2
HDAC3-208ENST00000476739 ANKARQ7Z5J8 1434 aa13.8□□□□□ -0.2
HDAC3-208ENST00000476739 PXDNQ92626 1479 aa13.8□□□□□ -0.2
HDAC3-208ENST00000476739 JCADQ9P266 1359 aa13.79□□□□□ -0.2
HDAC3-208ENST00000476739 ATP7BP35670 1465 aa13.79□□□□□ -0.2
HDAC3-208ENST00000476739 MED1Q15648 1581 aaPredicted RBP13.79□□□□□ -0.2
HDAC3-208ENST00000476739 NUDT16Q96DE0 195 aaKnown RBP13.78□□□□□ -0.2
HDAC3-208ENST00000476739 CABP2Q9NPB3 220 aa13.78□□□□□ -0.2
HDAC3-208ENST00000476739 KIF1AQ12756 1690 aa13.78□□□□□ -0.2
HDAC3-208ENST00000476739 EIF3AQ14152 1382 aaKnown RBP13.77□□□□□ -0.21
HDAC3-208ENST00000476739 SHPRHQ149N8 1683 aa13.77□□□□□ -0.21
HDAC3-208ENST00000476739 NPHP3Q7Z494 1330 aa13.77□□□□□ -0.21
HDAC3-208ENST00000476739 LRRC59Q96AG4 307 aaKnown RBP13.77□□□□□ -0.21
HDAC3-208ENST00000476739 PNPLA6Q8IY17 1366 aa13.76□□□□□ -0.21
HDAC3-208ENST00000476739 TOPAZ1Q8N9V7 1692 aa13.75□□□□□ -0.21
HDAC3-208ENST00000476739 LRP6O75581 1613 aa13.75□□□□□ -0.21
HDAC3-208ENST00000476739 SRPK2P78362 688 aaKnown RBP13.75□□□□□ -0.21
HDAC3-208ENST00000476739 KRT28Q7Z3Y7 464 aa13.75□□□□□ -0.21
HDAC3-208ENST00000476739 DISP3Q9P2K9 1392 aa13.74□□□□□ -0.21
HDAC3-208ENST00000476739 ITSN1Q15811 1721 aa13.73□□□□□ -0.21
HDAC3-208ENST00000476739 EVC2Q86UK5 1308 aa13.73□□□□□ -0.21
HDAC3-208ENST00000476739 ST20-MTHFSA0A0A6YYL1 179 aa13.73□□□□□ -0.21
HDAC3-208ENST00000476739 CCDC61Q9Y6R9 512 aa13.73□□□□□ -0.21
HDAC3-208ENST00000476739 SPATA31A6Q5VVP1 1343 aa13.72□□□□□ -0.21
HDAC3-208ENST00000476739 NUTM2BA6NNL0 878 aaPredicted RBP13.72□□□□□ -0.21
HDAC3-208ENST00000476739 NUTM2EB1AL46 878 aaPredicted RBP13.72□□□□□ -0.21
HDAC3-208ENST00000476739 PSME1Q06323 249 aa13.72□□□□□ -0.21
HDAC3-208ENST00000476739 NUTM2AQ8IVF1 878 aaPredicted RBP13.72□□□□□ -0.21
HDAC3-208ENST00000476739 TESK2Q96S53 571 aa13.72□□□□□ -0.21
HDAC3-208ENST00000476739 USP47Q96K76 1375 aa13.71□□□□□ -0.21
HDAC3-208ENST00000476739 SBNO2Q9Y2G9 1366 aa13.71□□□□□ -0.21
HDAC3-208ENST00000476739 SPATA31A3Q5VYP0 1347 aa13.71□□□□□ -0.21
HDAC3-208ENST00000476739 TRPM3Q9HCF6 1732 aaPredicted RBP13.71□□□□□ -0.21
HDAC3-208ENST00000476739 NGDNQ8NEJ9 315 aaKnown RBP13.71□□□□□ -0.21
HDAC3-208ENST00000476739 PPIP5K1Q6PFW1 1433 aa13.71□□□□□ -0.22
HDAC3-208ENST00000476739 ACEP12821 1306 aa13.7□□□□□ -0.22
HDAC3-208ENST00000476739 PLEKHG3A1L390 1219 aa13.7□□□□□ -0.22
HDAC3-208ENST00000476739 CABP1Q9NZU7 370 aa13.7□□□□□ -0.22
HDAC3-208ENST00000476739 RGS17Q9UGC6 210 aaPredicted RBP13.7□□□□□ -0.22
HDAC3-208ENST00000476739 COL22A1Q8NFW1 1626 aaPredicted RBP13.7□□□□□ -0.22
HDAC3-208ENST00000476739 POLR3AO14802 1390 aaPredicted RBP13.7□□□□□ -0.22
HDAC3-208ENST00000476739 TNS3Q68CZ2 1445 aa13.69□□□□□ -0.22
HDAC3-208ENST00000476739 SBNO1A3KN83 1393 aa13.69□□□□□ -0.22
HDAC3-208ENST00000476739 PLEKHG5O94827 1062 aa13.67□□□□□ -0.22
HDAC3-208ENST00000476739 ALS2Q96Q42 1657 aa13.66□□□□□ -0.22
HDAC3-208ENST00000476739 ADAMTS2O95450 1211 aa13.66□□□□□ -0.22
HDAC3-208ENST00000476739 MEX3CQ5U5Q3 659 aaKnown RBP13.66□□□□□ -0.22
HDAC3-208ENST00000476739 LMOD2Q6P5Q4 547 aa13.66□□□□□ -0.22
HDAC3-208ENST00000476739 CABLES1Q8TDN4 633 aa13.66□□□□□ -0.22
HDAC3-208ENST00000476739 PHF23Q9BUL5 403 aaPredicted RBP13.66□□□□□ -0.22
HDAC3-208ENST00000476739 PAK3O75914 559 aaPredicted RBP13.65□□□□□ -0.22
HDAC3-208ENST00000476739 ILDR2Q71H61 639 aa13.65□□□□□ -0.22
HDAC3-208ENST00000476739 ATAD2Q6PL18 1390 aa13.65□□□□□ -0.22
HDAC3-208ENST00000476739 ARHGEF10O15013 1369 aa13.63□□□□□ -0.23
HDAC3-208ENST00000476739 C8orf37Q96NL8 207 aa13.63□□□□□ -0.23
HDAC3-208ENST00000476739 SLC12A5Q9H2X9 1139 aa13.63□□□□□ -0.23
HDAC3-208ENST00000476739 AKAP12Q02952 1782 aa13.63□□□□□ -0.23
HDAC3-208ENST00000476739 CD163L1Q9NR16 1453 aa13.62□□□□□ -0.23
HDAC3-208ENST00000476739 ABCA3Q99758 1704 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms