RNA–Protein interactions for RNA: ENST00000476237.5

NMD3-208, Transcript of NMD3 ribosome export adaptor, human

TSL 5

Gene NMD3, Length 685 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NMD3-208	ENST00000476237	STAC3	Q96MF2	364 aa		32	■■■□□ 2.71
NMD3-208	ENST00000476237	RGS17	Q9UGC6	210 aa	Predicted RBP	32	■■■□□ 2.71
NMD3-208	ENST00000476237	NHSL1	Q5SYE7	1610 aa		31.98	■■■□□ 2.71
NMD3-208	ENST00000476237	DDX17	Q92841	729 aa	Known RBP	31.98	■■■□□ 2.71
NMD3-208	ENST00000476237	ORAI2	Q96SN7	254 aa		31.98	■■■□□ 2.71
NMD3-208	ENST00000476237	SPATA31A6	Q5VVP1	1343 aa		31.98	■■■□□ 2.71
NMD3-208	ENST00000476237	CDC42BPG	Q6DT37	1551 aa		31.97	■■■□□ 2.71
NMD3-208	ENST00000476237	LRRC59	Q96AG4	307 aa	Known RBP	31.93	■■■□□ 2.7
NMD3-208	ENST00000476237	SHPRH	Q149N8	1683 aa		31.92	■■■□□ 2.7
NMD3-208	ENST00000476237	ADGRB1	O14514	1584 aa		31.9	■■■□□ 2.7
NMD3-208	ENST00000476237	LRP6	O75581	1613 aa		31.89	■■■□□ 2.7
NMD3-208	ENST00000476237	ESCO1	Q5FWF5	840 aa		31.88	■■■□□ 2.69
NMD3-208	ENST00000476237	PRAM1	Q96QH2	718 aa		31.87	■■■□□ 2.69
NMD3-208	ENST00000476237	DLC1	Q96QB1	1528 aa		31.86	■■■□□ 2.69
NMD3-208	ENST00000476237	SOS2	Q07890	1332 aa	Predicted RBP	31.86	■■■□□ 2.69
NMD3-208	ENST00000476237	NUTM2F	A1L443	756 aa		31.85	■■■□□ 2.69
NMD3-208	ENST00000476237	POTEA	Q6S8J7	498 aa		31.83	■■■□□ 2.69
NMD3-208	ENST00000476237	POGK	Q9P215	609 aa		31.83	■■■□□ 2.69
NMD3-208	ENST00000476237	TRAK1	Q9UPV9	953 aa		31.83	■■■□□ 2.69
NMD3-208	ENST00000476237	PNPLA6	Q8IY17	1366 aa		31.82	■■■□□ 2.69
NMD3-208	ENST00000476237	SAFB2	Q14151	953 aa	Known RBP eCLIP	31.82	■■■□□ 2.68
NMD3-208	ENST00000476237	MEX3C	Q5U5Q3	659 aa	Known RBP	31.82	■■■□□ 2.68
NMD3-208	ENST00000476237	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.81	■■■□□ 2.68
NMD3-208	ENST00000476237	NUTM2E	B1AL46	878 aa	Predicted RBP	31.81	■■■□□ 2.68
NMD3-208	ENST00000476237	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.81	■■■□□ 2.68
NMD3-208	ENST00000476237	NPHP3	Q7Z494	1330 aa		31.79	■■■□□ 2.68
NMD3-208	ENST00000476237	FMN2	Q9NZ56	1722 aa		31.79	■■■□□ 2.68
NMD3-208	ENST00000476237	FOXO3	O43524	673 aa		31.76	■■■□□ 2.67
NMD3-208	ENST00000476237	PXDN	Q92626	1479 aa		31.72	■■■□□ 2.67
NMD3-208	ENST00000476237	XPC	Q01831	940 aa	Predicted RBP	31.7	■■■□□ 2.67
NMD3-208	ENST00000476237	SIN3A	Q96ST3	1273 aa		31.7	■■■□□ 2.67
NMD3-208	ENST00000476237	ZNF772	Q68DY9	489 aa	Predicted RBP	31.69	■■■□□ 2.66
NMD3-208	ENST00000476237	ADGRB2	O60241	1585 aa		31.68	■■■□□ 2.66
NMD3-208	ENST00000476237	HIRIP3	Q9BW71	556 aa	Predicted RBP	31.68	■■■□□ 2.66
NMD3-208	ENST00000476237	MINK1	Q8N4C8	1332 aa	Predicted RBP	31.68	■■■□□ 2.66
NMD3-208	ENST00000476237	TRIM26	Q12899	539 aa	Predicted RBP	31.67	■■■□□ 2.66
NMD3-208	ENST00000476237	PHF8	Q9UPP1	1060 aa		31.67	■■■□□ 2.66
NMD3-208	ENST00000476237	L3MBTL2	Q969R5	705 aa		31.66	■■■□□ 2.66
NMD3-208	ENST00000476237	KIF1A	Q12756	1690 aa		31.66	■■■□□ 2.66
NMD3-208	ENST00000476237	KIAA1210	Q9ULL0	1709 aa		31.65	■■■□□ 2.66
NMD3-208	ENST00000476237	ANKAR	Q7Z5J8	1434 aa		31.65	■■■□□ 2.66
NMD3-208	ENST00000476237	NBPF1	Q3BBV0	1214 aa		31.64	■■■□□ 2.66
NMD3-208	ENST00000476237	WASL	O00401	505 aa	Predicted RBP	31.62	■■■□□ 2.65
NMD3-208	ENST00000476237	RGPD8	O14715	1765 aa	Predicted RBP	31.62	■■■□□ 2.65
NMD3-208	ENST00000476237	AFF2	P51816	1311 aa		31.62	■■■□□ 2.65
NMD3-208	ENST00000476237	NEUROD1	Q13562	356 aa		31.62	■■■□□ 2.65
NMD3-208	ENST00000476237	KRT28	Q7Z3Y7	464 aa		31.62	■■■□□ 2.65
NMD3-208	ENST00000476237	C8orf37	Q96NL8	207 aa		31.62	■■■□□ 2.65
NMD3-208	ENST00000476237	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.61	■■■□□ 2.65
NMD3-208	ENST00000476237	ADAMTS2	O95450	1211 aa		31.61	■■■□□ 2.65
NMD3-208	ENST00000476237	ARHGEF28	Q8N1W1	1705 aa	Known RBP	31.61	■■■□□ 2.65
NMD3-208	ENST00000476237	EIF3A	Q14152	1382 aa	Known RBP	31.59	■■■□□ 2.65
NMD3-208	ENST00000476237	USP32	Q8NFA0	1604 aa		31.59	■■■□□ 2.65
NMD3-208	ENST00000476237	SPATA31A3	Q5VYP0	1347 aa		31.58	■■■□□ 2.65
NMD3-208	ENST00000476237	PRR36	Q9H6K5	1346 aa		31.56	■■■□□ 2.64
NMD3-208	ENST00000476237	PSME1	Q06323	249 aa		31.56	■■■□□ 2.64
NMD3-208	ENST00000476237	PMFBP1	Q8TBY8	1022 aa		31.56	■■■□□ 2.64
NMD3-208	ENST00000476237	TULP4	Q9NRJ4	1543 aa		31.55	■■■□□ 2.64
NMD3-208	ENST00000476237	NGLY1	Q96IV0	654 aa		31.55	■■■□□ 2.64
NMD3-208	ENST00000476237	RXRB	P28702	533 aa		31.51	■■■□□ 2.63
NMD3-208	ENST00000476237	SBNO1	A3KN83	1393 aa		31.51	■■■□□ 2.63
NMD3-208	ENST00000476237	TNS3	Q68CZ2	1445 aa		31.49	■■■□□ 2.63
NMD3-208	ENST00000476237	CDK19	Q9BWU1	502 aa		31.48	■■■□□ 2.63
NMD3-208	ENST00000476237	QTRT2	Q9H974	415 aa	Known RBP	31.48	■■■□□ 2.63
NMD3-208	ENST00000476237	FNBP4	Q8N3X1	1017 aa	Predicted RBP	31.47	■■■□□ 2.63
NMD3-208	ENST00000476237	NUDT16	Q96DE0	195 aa	Known RBP	31.46	■■■□□ 2.63
NMD3-208	ENST00000476237	USP21	Q9UK80	565 aa		31.44	■■■□□ 2.62
NMD3-208	ENST00000476237	ATP7B	P35670	1465 aa		31.44	■■■□□ 2.62
NMD3-208	ENST00000476237	CENPJ	Q9HC77	1338 aa	Predicted RBP	31.44	■■■□□ 2.62
NMD3-208	ENST00000476237	GPRASP1	Q5JY77	1395 aa		31.43	■■■□□ 2.62
NMD3-208	ENST00000476237	NGDN	Q8NEJ9	315 aa	Known RBP	31.42	■■■□□ 2.62
NMD3-208	ENST00000476237	ARHGEF10	O15013	1369 aa		31.42	■■■□□ 2.62
NMD3-208	ENST00000476237	LMOD2	Q6P5Q4	547 aa		31.41	■■■□□ 2.62
NMD3-208	ENST00000476237	TRPM1	Q7Z4N2	1603 aa		31.41	■■■□□ 2.62
NMD3-208	ENST00000476237	RBM6	P78332	1123 aa	Known RBP	31.4	■■■□□ 2.62
NMD3-208	ENST00000476237	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.4	■■■□□ 2.62
NMD3-208	ENST00000476237	NBPF8	Q3BBV2	869 aa		31.38	■■■□□ 2.61
NMD3-208	ENST00000476237	CABLES1	Q8TDN4	633 aa		31.38	■■■□□ 2.61
NMD3-208	ENST00000476237	ROCK2	O75116	1388 aa	Known RBP	31.38	■■■□□ 2.61
NMD3-208	ENST00000476237	TRPC5	Q9UL62	973 aa	Predicted RBP	31.37	■■■□□ 2.61
NMD3-208	ENST00000476237	CCDC61	Q9Y6R9	512 aa		31.37	■■■□□ 2.61
NMD3-208	ENST00000476237	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.36	■■■□□ 2.61
NMD3-208	ENST00000476237	MARF1	Q9Y4F3	1742 aa	Known RBP	31.36	■■■□□ 2.61
NMD3-208	ENST00000476237	HAP1	P54257	671 aa	Predicted RBP	31.35	■■■□□ 2.61
NMD3-208	ENST00000476237	ITSN1	Q15811	1721 aa		31.35	■■■□□ 2.61
NMD3-208	ENST00000476237	BCL9L	Q86UU0	1499 aa		31.34	■■■□□ 2.61
NMD3-208	ENST00000476237	TONSL	Q96HA7	1378 aa		31.33	■■■□□ 2.61
NMD3-208	ENST00000476237	PLEKHG5	O94827	1062 aa		31.33	■■■□□ 2.61
NMD3-208	ENST00000476237	ATRN	O75882	1429 aa		31.32	■■■□□ 2.61
NMD3-208	ENST00000476237	PLEKHG3	A1L390	1219 aa		31.32	■■■□□ 2.6
NMD3-208	ENST00000476237	SRPK2	P78362	688 aa	Known RBP	31.32	■■■□□ 2.6
NMD3-208	ENST00000476237	POLR3A	O14802	1390 aa	Predicted RBP	31.3	■■■□□ 2.6
NMD3-208	ENST00000476237	QRICH2	Q9H0J4	1663 aa		31.3	■■■□□ 2.6
NMD3-208	ENST00000476237	CABP2	Q9NPB3	220 aa		31.3	■■■□□ 2.6
NMD3-208	ENST00000476237	ACE	P12821	1306 aa		31.29	■■■□□ 2.6
NMD3-208	ENST00000476237	TOPAZ1	Q8N9V7	1692 aa		31.29	■■■□□ 2.6
NMD3-208	ENST00000476237	ALS2	Q96Q42	1657 aa		31.29	■■■□□ 2.6
NMD3-208	ENST00000476237	PAK3	O75914	559 aa	Predicted RBP	31.29	■■■□□ 2.6
NMD3-208	ENST00000476237	RGS12	O14924	1447 aa		31.29	■■■□□ 2.6
NMD3-208	ENST00000476237	SLIT2	O94813	1529 aa		31.29	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms