RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-223ENST00000475146 JCADQ9P266 1359 aa34.8■■■■□ 3.16
CPNE1-223ENST00000475146 PHF23Q9BUL5 403 aaPredicted RBP34.79■■■■□ 3.16
CPNE1-223ENST00000475146 SIN3AQ96ST3 1273 aa34.78■■■■□ 3.16
CPNE1-223ENST00000475146 DLC1Q96QB1 1528 aa34.77■■■■□ 3.16
CPNE1-223ENST00000475146 PRAM1Q96QH2 718 aa34.77■■■■□ 3.16
CPNE1-223ENST00000475146 NHSL1Q5SYE7 1610 aa34.77■■■■□ 3.16
CPNE1-223ENST00000475146 SAFB2Q14151 953 aaKnown RBP eCLIP34.76■■■■□ 3.16
CPNE1-223ENST00000475146 TRAK1Q9UPV9 953 aa34.76■■■■□ 3.16
CPNE1-223ENST00000475146 ORAI2Q96SN7 254 aa34.75■■■■□ 3.15
CPNE1-223ENST00000475146 POGKQ9P215 609 aa34.75■■■■□ 3.15
CPNE1-223ENST00000475146 NEUROD1Q13562 356 aa34.74■■■■□ 3.15
CPNE1-223ENST00000475146 DDX17Q92841 729 aaKnown RBP34.74■■■■□ 3.15
CPNE1-223ENST00000475146 NUTM2FA1L443 756 aa34.72■■■■□ 3.15
CPNE1-223ENST00000475146 ILDR2Q71H61 639 aa34.7■■■■□ 3.15
CPNE1-223ENST00000475146 ESCO1Q5FWF5 840 aa34.69■■■■□ 3.14
CPNE1-223ENST00000475146 L3MBTL2Q969R5 705 aa34.68■■■■□ 3.14
CPNE1-223ENST00000475146 FMN2Q9NZ56 1722 aa34.68■■■■□ 3.14
CPNE1-223ENST00000475146 KIAA1210Q9ULL0 1709 aa34.66■■■■□ 3.14
CPNE1-223ENST00000475146 SHPRHQ149N8 1683 aa34.66■■■■□ 3.14
CPNE1-223ENST00000475146 SPATA31A6Q5VVP1 1343 aa34.63■■■■□ 3.13
CPNE1-223ENST00000475146 LRRC59Q96AG4 307 aaKnown RBP34.63■■■■□ 3.13
CPNE1-223ENST00000475146 MINK1Q8N4C8 1332 aaPredicted RBP34.59■■■■□ 3.13
CPNE1-223ENST00000475146 ARHGEF28Q8N1W1 1705 aaKnown RBP34.59■■■■□ 3.13
CPNE1-223ENST00000475146 ADGRB2O60241 1585 aa34.58■■■■□ 3.13
CPNE1-223ENST00000475146 NBPF1Q3BBV0 1214 aa34.58■■■■□ 3.13
CPNE1-223ENST00000475146 HIRIP3Q9BW71 556 aaPredicted RBP34.58■■■■□ 3.13
CPNE1-223ENST00000475146 SOS2Q07890 1332 aaPredicted RBP34.57■■■■□ 3.13
CPNE1-223ENST00000475146 NPHP3Q7Z494 1330 aa34.57■■■■□ 3.13
CPNE1-223ENST00000475146 LRP6O75581 1613 aa34.56■■■■□ 3.12
CPNE1-223ENST00000475146 FOXO3O43524 673 aa34.55■■■■□ 3.12
CPNE1-223ENST00000475146 PNPLA6Q8IY17 1366 aa34.54■■■■□ 3.12
CPNE1-223ENST00000475146 NUTM2BA6NNL0 878 aaPredicted RBP34.54■■■■□ 3.12
CPNE1-223ENST00000475146 NUTM2EB1AL46 878 aaPredicted RBP34.54■■■■□ 3.12
CPNE1-223ENST00000475146 MEX3CQ5U5Q3 659 aaKnown RBP34.54■■■■□ 3.12
CPNE1-223ENST00000475146 NUTM2AQ8IVF1 878 aaPredicted RBP34.54■■■■□ 3.12
CPNE1-223ENST00000475146 KIF1AQ12756 1690 aa34.53■■■■□ 3.12
CPNE1-223ENST00000475146 XPCQ01831 940 aaPredicted RBP34.51■■■■□ 3.12
CPNE1-223ENST00000475146 RGPD8O14715 1765 aaPredicted RBP34.5■■■■□ 3.11
CPNE1-223ENST00000475146 RGS17Q9UGC6 210 aaPredicted RBP34.5■■■■□ 3.11
CPNE1-223ENST00000475146 ANKARQ7Z5J8 1434 aa34.49■■■■□ 3.11
CPNE1-223ENST00000475146 EIF3AQ14152 1382 aaKnown RBP34.49■■■■□ 3.11
CPNE1-223ENST00000475146 PXDNQ92626 1479 aa34.48■■■■□ 3.11
CPNE1-223ENST00000475146 PHF8Q9UPP1 1060 aa34.48■■■■□ 3.11
CPNE1-223ENST00000475146 TONSLQ96HA7 1378 aa34.48■■■■□ 3.11
CPNE1-223ENST00000475146 WASLO00401 505 aaPredicted RBP34.46■■■■□ 3.11
CPNE1-223ENST00000475146 TRPM1Q7Z4N2 1603 aa34.45■■■■□ 3.11
CPNE1-223ENST00000475146 USP32Q8NFA0 1604 aa34.45■■■■□ 3.11
CPNE1-223ENST00000475146 TULP4Q9NRJ4 1543 aa34.44■■■■□ 3.1
CPNE1-223ENST00000475146 PCGF6Q9BYE7 350 aa34.42■■■■□ 3.1
CPNE1-223ENST00000475146 ROCK2O75116 1388 aaKnown RBP34.41■■■■□ 3.1
CPNE1-223ENST00000475146 PRR36Q9H6K5 1346 aa34.39■■■■□ 3.1
CPNE1-223ENST00000475146 PMFBP1Q8TBY8 1022 aa34.39■■■■□ 3.1
CPNE1-223ENST00000475146 CENPJQ9HC77 1338 aaPredicted RBP34.38■■■■□ 3.09
CPNE1-223ENST00000475146 KRT28Q7Z3Y7 464 aa34.38■■■■□ 3.09
CPNE1-223ENST00000475146 NBPF8Q3BBV2 869 aa34.36■■■■□ 3.09
CPNE1-223ENST00000475146 POTEAQ6S8J7 498 aa34.36■■■■□ 3.09
CPNE1-223ENST00000475146 COL22A1Q8NFW1 1626 aaPredicted RBP34.35■■■■□ 3.09
CPNE1-223ENST00000475146 SOCS7O14512 581 aa34.34■■■■□ 3.09
CPNE1-223ENST00000475146 ADAMTS2O95450 1211 aa34.33■■■■□ 3.09
CPNE1-223ENST00000475146 PSME1Q06323 249 aa34.33■■■■□ 3.09
CPNE1-223ENST00000475146 CDK19Q9BWU1 502 aa34.33■■■■□ 3.09
CPNE1-223ENST00000475146 SPATA31A3Q5VYP0 1347 aa34.32■■■■□ 3.09
CPNE1-223ENST00000475146 ATP7BP35670 1465 aa34.32■■■■□ 3.08
CPNE1-223ENST00000475146 C8orf37Q96NL8 207 aa34.31■■■■□ 3.08
CPNE1-223ENST00000475146 QRICH2Q9H0J4 1663 aa34.31■■■■□ 3.08
CPNE1-223ENST00000475146 ZNF772Q68DY9 489 aaPredicted RBP34.3■■■■□ 3.08
CPNE1-223ENST00000475146 NUDT16Q96DE0 195 aaKnown RBP34.3■■■■□ 3.08
CPNE1-223ENST00000475146 ITSN1Q15811 1721 aa34.29■■■■□ 3.08
CPNE1-223ENST00000475146 TNS3Q68CZ2 1445 aa34.29■■■■□ 3.08
CPNE1-223ENST00000475146 AFF2P51816 1311 aa34.28■■■■□ 3.08
CPNE1-223ENST00000475146 SBNO1A3KN83 1393 aa34.26■■■■□ 3.08
CPNE1-223ENST00000475146 GPRASP1Q5JY77 1395 aa34.26■■■■□ 3.08
CPNE1-223ENST00000475146 NGDNQ8NEJ9 315 aaKnown RBP34.26■■■■□ 3.08
CPNE1-223ENST00000475146 SRPK2P78362 688 aaKnown RBP34.24■■■■□ 3.07
CPNE1-223ENST00000475146 LMOD2Q6P5Q4 547 aa34.24■■■■□ 3.07
CPNE1-223ENST00000475146 RALGAPBQ86X10 1494 aa34.23■■■■□ 3.07
CPNE1-223ENST00000475146 NGLY1Q96IV0 654 aa34.23■■■■□ 3.07
CPNE1-223ENST00000475146 CARD11Q9BXL7 1154 aa34.21■■■■□ 3.07
CPNE1-223ENST00000475146 TOPAZ1Q8N9V7 1692 aa34.2■■■■□ 3.07
CPNE1-223ENST00000475146 CCDC61Q9Y6R9 512 aa34.2■■■■□ 3.07
CPNE1-223ENST00000475146 ARHGEF10O15013 1369 aa34.2■■■■□ 3.07
CPNE1-223ENST00000475146 PLEKHG5O94827 1062 aa34.19■■■■□ 3.06
CPNE1-223ENST00000475146 CABP2Q9NPB3 220 aa34.18■■■■□ 3.06
CPNE1-223ENST00000475146 TRPM3Q9HCF6 1732 aaPredicted RBP34.18■■■■□ 3.06
CPNE1-223ENST00000475146 HAP1P54257 671 aaPredicted RBP34.16■■■■□ 3.06
CPNE1-223ENST00000475146 EVC2Q86UK5 1308 aa34.14■■■■□ 3.06
CPNE1-223ENST00000475146 PAK3O75914 559 aaPredicted RBP34.13■■■■□ 3.05
CPNE1-223ENST00000475146 CLSPNQ9HAW4 1339 aa34.12■■■■□ 3.05
CPNE1-223ENST00000475146 CABLES1Q8TDN4 633 aa34.12■■■■□ 3.05
CPNE1-223ENST00000475146 MARF1Q9Y4F3 1742 aaKnown RBP34.12■■■■□ 3.05
CPNE1-223ENST00000475146 PPIP5K1Q6PFW1 1433 aa34.12■■■■□ 3.05
CPNE1-223ENST00000475146 ACEP12821 1306 aa34.11■■■■□ 3.05
CPNE1-223ENST00000475146 POLR3AO14802 1390 aaPredicted RBP34.11■■■■□ 3.05
CPNE1-223ENST00000475146 PLEKHG3A1L390 1219 aa34.1■■■■□ 3.05
CPNE1-223ENST00000475146 USP21Q9UK80 565 aa34.1■■■■□ 3.05
CPNE1-223ENST00000475146 ALS2Q96Q42 1657 aa34.09■■■■□ 3.05
CPNE1-223ENST00000475146 RXRBP28702 533 aa34.08■■■■□ 3.05
CPNE1-223ENST00000475146 FNBP4Q8N3X1 1017 aaPredicted RBP34.07■■■■□ 3.04
CPNE1-223ENST00000475146 QTRT2Q9H974 415 aaKnown RBP34.07■■■■□ 3.04
CPNE1-223ENST00000475146 ABCA3Q99758 1704 aa34.07■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms