RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, human

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-222	ENST00000474742	MRGPRX2	Q96LB1	330 aa		2.72	□□□□□ -1.97
HDAC9-222	ENST00000474742	TRIM47	Q96LD4	638 aa		2.72	□□□□□ -1.97
HDAC9-222	ENST00000474742	REPIN1	Q9BWE0	567 aa	Known RBP	2.72	□□□□□ -1.97
HDAC9-222	ENST00000474742	PRDM9	Q9NQV7	894 aa		2.72	□□□□□ -1.97
HDAC9-222	ENST00000474742	DAXX	Q9UER7	740 aa	Predicted RBP	2.72	□□□□□ -1.97
HDAC9-222	ENST00000474742	SLC27A5	Q9Y2P5	690 aa		2.72	□□□□□ -1.97
HDAC9-222	ENST00000474742		J3QL48	77 aa		2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	SMPD1	P17405	629 aa		2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	TRIM32	Q13049	653 aa		2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	HIC1	Q14526	733 aa		2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	METTL3	Q86U44	580 aa	Known RBP	2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	FAM160A2	Q8N612	972 aa	Predicted RBP	2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	ZSCAN1	Q8NBB4	408 aa		2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	HPS1	Q92902	700 aa		2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	WASF2	Q9Y6W5	498 aa		2.71	□□□□□ -1.98
HDAC9-222	ENST00000474742	ALDH1A1	P00352	501 aa		2.7	□□□□□ -1.98
HDAC9-222	ENST00000474742	GCGR	P47871	477 aa		2.7	□□□□□ -1.98
HDAC9-222	ENST00000474742	SMYD5	Q6GMV2	418 aa		2.7	□□□□□ -1.98
HDAC9-222	ENST00000474742	BRICD5	Q6PL45	260 aa		2.7	□□□□□ -1.98
HDAC9-222	ENST00000474742	P3H3	Q8IVL6	736 aa		2.7	□□□□□ -1.98
HDAC9-222	ENST00000474742	IRF7	Q92985	503 aa		2.7	□□□□□ -1.98
HDAC9-222	ENST00000474742	NXF1	Q9UBU9	619 aa	Known RBP	2.7	□□□□□ -1.98
HDAC9-222	ENST00000474742	GNPAT	O15228	680 aa		2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	CAPN5	O15484	640 aa	Predicted RBP	2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	VEGFB	P49765	207 aa		2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	MSS51	Q4VC12	460 aa		2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	RC3H1	Q5TC82	1133 aa	Known RBP	2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	RNF19B	Q6ZMZ0	732 aa		2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	EHBP1	Q8NDI1	1231 aa		2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	NLRP7	Q8WX94	980 aa		2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	THAP11	Q96EK4	314 aa		2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	SALL2	Q9Y467	1007 aa	Predicted RBP	2.69	□□□□□ -1.98
HDAC9-222	ENST00000474742	SEMA3E	O15041	775 aa		2.68	□□□□□ -1.98
HDAC9-222	ENST00000474742	GMPR	P36959	345 aa		2.68	□□□□□ -1.98
HDAC9-222	ENST00000474742	VSIG10	Q8N0Z9	540 aa		2.68	□□□□□ -1.98
HDAC9-222	ENST00000474742	USB1	Q9BQ65	265 aa	Known RBP	2.68	□□□□□ -1.98
HDAC9-222	ENST00000474742	BMP1	P13497	986 aa		2.67	□□□□□ -1.98
HDAC9-222	ENST00000474742	WNT7B	P56706	349 aa		2.67	□□□□□ -1.98
HDAC9-222	ENST00000474742	SCARF1	Q14162	830 aa		2.67	□□□□□ -1.98
HDAC9-222	ENST00000474742	RBM26	Q5T8P6	1007 aa	Known RBP	2.67	□□□□□ -1.98
HDAC9-222	ENST00000474742	KDM4A	O75164	1064 aa		2.66	□□□□□ -1.98
HDAC9-222	ENST00000474742	MMP16	P51512	607 aa		2.66	□□□□□ -1.98
HDAC9-222	ENST00000474742	NPAS3	Q8IXF0	933 aa		2.66	□□□□□ -1.98
HDAC9-222	ENST00000474742		H3BM21	787 aa		2.65	□□□□□ -1.99
HDAC9-222	ENST00000474742	MAN1A2	O60476	641 aa		2.65	□□□□□ -1.99
HDAC9-222	ENST00000474742	DXO	O77932	396 aa	Known RBP	2.65	□□□□□ -1.99
HDAC9-222	ENST00000474742	USP46	P62068	366 aa		2.65	□□□□□ -1.99
HDAC9-222	ENST00000474742	KRI1	Q8N9T8	703 aa	Known RBP	2.65	□□□□□ -1.99
HDAC9-222	ENST00000474742	ZFP42	Q96MM3	310 aa		2.65	□□□□□ -1.99
HDAC9-222	ENST00000474742	LOC100996750	A0A140TA64	210 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	PLEKHG3	A1L390	1219 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	TESPA1	A2RU30	521 aa	Predicted RBP	2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	SKOR1	P84550	965 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	LCE2C	Q5TA81	110 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	NUTM1	Q86Y26	1132 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	NUDT12	Q9BQG2	462 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	KRTAP4-6	Q9BYQ5	205 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	ERBB4	Q15303	1308 aa		2.64	□□□□□ -1.99
HDAC9-222	ENST00000474742	C6orf229	H3BNL8	230 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	GPR37	O15354	613 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	SLC24A1	O60721	1099 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	UPP2	O95045	317 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	JUND	P17535	347 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	MDM2	Q00987	491 aa	Predicted RBP	2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	ARID5B	Q14865	1188 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	SUZ12	Q15022	739 aa	Known RBP	2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	LINC01559	Q495D7	138 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	TRIM46	Q7Z4K8	759 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	GPIHBP1	Q8IV16	184 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	KCTD17	Q8N5Z5	321 aa		2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	PURB	Q96QR8	312 aa	Known RBP	2.63	□□□□□ -1.99
HDAC9-222	ENST00000474742	SOBP	A7XYQ1	873 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	RNF225	M0QZC1	329 aa	Predicted RBP	2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	TULP1	O00294	542 aa	Predicted RBP	2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	MS4A1	P11836	297 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	CD46	P15529	392 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	WDR4	P57081	412 aa	Known RBP	2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	GUCA2A	Q02747	115 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	NNT	Q13423	1086 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	C6orf118	Q5T5N4	469 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	MRPL14	Q6P1L8	145 aa	Known RBP	2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	TMEM151A	Q8N4L1	468 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	HLA-C	Q95604	372 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	PHOX2B	Q99453	314 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	TLL2	Q9Y6L7	1015 aa		2.62	□□□□□ -1.99
HDAC9-222	ENST00000474742	HOXA2	O43364	376 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	GDF11	O95390	407 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	ADH1C	P00326	375 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	CCNYL3	P0C7X3	344 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	BMP2	P12643	396 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	VARS	P26640	1264 aa	Known RBP	2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	CTH	P32929	405 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	SH3BP2	P78314	561 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	AGER	Q15109	404 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	PTCRA	Q6ISU1	281 aa	Predicted RBP	2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	RETREG3	Q86VR2	466 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	BAP1	Q92560	729 aa		2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	SYMPK	Q92797	1274 aa	Known RBP	2.61	□□□□□ -1.99
HDAC9-222	ENST00000474742	SIAH2	O43255	324 aa		2.6	□□□□□ -1.99
HDAC9-222	ENST00000474742	FDX1	P10109	184 aa		2.6	□□□□□ -1.99

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