RNA–Protein interactions for RNA: ENST00000473515.5

SCML4-209, Transcript of Scm polycomb group protein like 4, human

TSL 2

Gene SCML4, Length 4,297 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCML4-209	ENST00000473515	NLRP6	P59044	892 aa		11.74	□□□□□ -0.53
SCML4-209	ENST00000473515	WAPL	Q7Z5K2	1190 aa		11.74	□□□□□ -0.53
SCML4-209	ENST00000473515	DDX19B	Q9UMR2	479 aa		11.74	□□□□□ -0.53
SCML4-209	ENST00000473515	KDM5C	P41229	1560 aa		11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	HMMR	O75330	724 aa		11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	EIF2S2	P20042	333 aa	Known RBP	11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	SYCP2	Q9BX26	1530 aa		11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	MBD5	Q9P267	1494 aa		11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	PTMA	P06454	111 aa	Known RBP	11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	PSME1	Q06323	249 aa		11.73	□□□□□ -0.53
SCML4-209	ENST00000473515	PRKCSH	P14314	528 aa	Predicted RBP	11.72	□□□□□ -0.53
SCML4-209	ENST00000473515	UHRF1BP1	Q6BDS2	1440 aa		11.72	□□□□□ -0.53
SCML4-209	ENST00000473515	NSD3	Q9BZ95	1437 aa		11.72	□□□□□ -0.53
SCML4-209	ENST00000473515	BCORL1	Q5H9F3	1711 aa		11.72	□□□□□ -0.53
SCML4-209	ENST00000473515	TEF	Q10587	303 aa		11.72	□□□□□ -0.53
SCML4-209	ENST00000473515	LNPK	Q9C0E8	428 aa		11.72	□□□□□ -0.53
SCML4-209	ENST00000473515	ITSN2	Q9NZM3	1697 aa		11.71	□□□□□ -0.53
SCML4-209	ENST00000473515	TRAPPC8	Q9Y2L5	1435 aa		11.71	□□□□□ -0.53
SCML4-209	ENST00000473515	NOL8	Q76FK4	1167 aa	Known RBP	11.71	□□□□□ -0.54
SCML4-209	ENST00000473515	ARHGEF12	Q9NZN5	1544 aa		11.71	□□□□□ -0.54
SCML4-209	ENST00000473515	RPGRIP1L	Q68CZ1	1315 aa		11.71	□□□□□ -0.54
SCML4-209	ENST00000473515	MCC	P23508	829 aa		11.71	□□□□□ -0.54
SCML4-209	ENST00000473515	GNAI1	P63096	354 aa		11.71	□□□□□ -0.54
SCML4-209	ENST00000473515	GBP4	Q96PP9	640 aa		11.71	□□□□□ -0.54
SCML4-209	ENST00000473515	CHMP3	Q9Y3E7	222 aa		11.7	□□□□□ -0.54
SCML4-209	ENST00000473515	PLCH2	O75038	1416 aa		11.7	□□□□□ -0.54
SCML4-209	ENST00000473515	RRS1	Q15050	365 aa	Known RBP	11.7	□□□□□ -0.54
SCML4-209	ENST00000473515	PLCB2	Q00722	1185 aa		11.69	□□□□□ -0.54
SCML4-209	ENST00000473515	ADGB	Q8N7X0	1667 aa		11.69	□□□□□ -0.54
SCML4-209	ENST00000473515	KIAA1211	Q6ZU35	1233 aa		11.69	□□□□□ -0.54
SCML4-209	ENST00000473515	NOS1	P29475	1434 aa		11.69	□□□□□ -0.54
SCML4-209	ENST00000473515	NPHP1	O15259	732 aa		11.69	□□□□□ -0.54
SCML4-209	ENST00000473515	PARD3	Q8TEW0	1356 aa		11.69	□□□□□ -0.54
SCML4-209	ENST00000473515	TSPYL4	Q9UJ04	414 aa		11.69	□□□□□ -0.54
SCML4-209	ENST00000473515	KIF16B	Q96L93	1317 aa		11.68	□□□□□ -0.54
SCML4-209	ENST00000473515	PBRM1	Q86U86	1689 aa		11.68	□□□□□ -0.54
SCML4-209	ENST00000473515	FKBP5	Q13451	457 aa	Predicted RBP	11.68	□□□□□ -0.54
SCML4-209	ENST00000473515	ADGRL2	O95490	1459 aa		11.68	□□□□□ -0.54
SCML4-209	ENST00000473515	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.68	□□□□□ -0.54
SCML4-209	ENST00000473515	SULT6B1	Q6IMI4	303 aa		11.68	□□□□□ -0.54
SCML4-209	ENST00000473515	C1orf141	Q5JVX7	400 aa		11.67	□□□□□ -0.54
SCML4-209	ENST00000473515	WWC1	Q8IX03	1113 aa		11.67	□□□□□ -0.54
SCML4-209	ENST00000473515	API5	Q9BZZ5	524 aa	Known RBP	11.67	□□□□□ -0.54
SCML4-209	ENST00000473515	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.67	□□□□□ -0.54
SCML4-209	ENST00000473515	ABTB2	Q8N961	1025 aa		11.67	□□□□□ -0.54
SCML4-209	ENST00000473515	NUP160	Q12769	1436 aa		11.67	□□□□□ -0.54
SCML4-209	ENST00000473515	RILPL2	Q969X0	211 aa		11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	SLFN5	Q08AF3	891 aa		11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	ASXL2	Q76L83	1435 aa		11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	THUMPD2	Q9BTF0	503 aa	Known RBP	11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	PDZRN3	Q9UPQ7	1066 aa		11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	CFAP44	Q96MT7	982 aa		11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	C1orf115	Q9H7X2	142 aa		11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	CEBPA	P49715	358 aa	Predicted RBP	11.66	□□□□□ -0.54
SCML4-209	ENST00000473515	CHMP4A	Q9BY43	222 aa		11.65	□□□□□ -0.54
SCML4-209	ENST00000473515	FAM135A	Q9P2D6	1515 aa		11.65	□□□□□ -0.54
SCML4-209	ENST00000473515	CCDC9	Q9Y3X0	531 aa	Known RBP	11.65	□□□□□ -0.54
SCML4-209	ENST00000473515	MSN	P26038	577 aa	Known RBP	11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	PDE3A	Q14432	1141 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	C22orf23	Q9BZE7	217 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	SCAF11	Q99590	1463 aa	Known RBP	11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	TARBP1	Q13395	1621 aa	Known RBP	11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	FBLN1	P23142	703 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	ESCO1	Q5FWF5	840 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	NUDT16	Q96DE0	195 aa	Known RBP	11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	TESK2	Q96S53	571 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	NOB1	Q9ULX3	412 aa	Known RBP	11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	ATAD2	Q6PL18	1390 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	TWISTNB	Q3B726	338 aa	Predicted RBP	11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	CCDC61	Q9Y6R9	512 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	PRAG1	Q86YV5	1406 aa		11.64	□□□□□ -0.55
SCML4-209	ENST00000473515	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.63	□□□□□ -0.55
SCML4-209	ENST00000473515	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.63	□□□□□ -0.55
SCML4-209	ENST00000473515	DUSP27	Q5VZP5	1158 aa		11.63	□□□□□ -0.55
SCML4-209	ENST00000473515	C14orf93	Q9H972	538 aa	Known RBP	11.63	□□□□□ -0.55
SCML4-209	ENST00000473515	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.63	□□□□□ -0.55
SCML4-209	ENST00000473515	TMPO	P42166	694 aa	Known RBP	11.63	□□□□□ -0.55
SCML4-209	ENST00000473515	CHMP5	Q9NZZ3	219 aa		11.62	□□□□□ -0.55
SCML4-209	ENST00000473515	INSR	P06213	1382 aa		11.62	□□□□□ -0.55
SCML4-209	ENST00000473515	NME9	Q86XW9	330 aa		11.62	□□□□□ -0.55
SCML4-209	ENST00000473515	RBM33	Q96EV2	1170 aa	Known RBP	11.62	□□□□□ -0.55
SCML4-209	ENST00000473515	WDR63	Q8IWG1	891 aa		11.62	□□□□□ -0.55
SCML4-209	ENST00000473515	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.61	□□□□□ -0.55
SCML4-209	ENST00000473515	NLRP2	Q9NX02	1062 aa		11.61	□□□□□ -0.55
SCML4-209	ENST00000473515	DUOX2	Q9NRD8	1548 aa		11.61	□□□□□ -0.55
SCML4-209	ENST00000473515	DDX11L8	A8MPP1	907 aa		11.61	□□□□□ -0.55
SCML4-209	ENST00000473515	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.61	□□□□□ -0.55
SCML4-209	ENST00000473515	ZNF692	Q9BU19	519 aa	Predicted RBP	11.61	□□□□□ -0.55
SCML4-209	ENST00000473515	EMILIN1	Q9Y6C2	1016 aa		11.61	□□□□□ -0.55
SCML4-209	ENST00000473515	SHANK2	Q9UPX8	1470 aa		11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	GOLGA6L4	A6NEF3	574 aa		11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	PER1	O15534	1290 aa	Predicted RBP	11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	DCTN1	Q14203	1278 aa		11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	GORAB	Q5T7V8	394 aa		11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	BLM	P54132	1417 aa	Predicted RBP	11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	XPC	Q01831	940 aa	Predicted RBP	11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	ZRSR1	Q15695	479 aa	Known RBP	11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	CEP170	Q5SW79	1584 aa		11.6	□□□□□ -0.55
SCML4-209	ENST00000473515	ATF7IP	Q6VMQ6	1270 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms