RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 KIF7Q2M1P5 1343 aa13.99□□□□□ -0.17
SF3A1-207ENST00000471342 NKTRP30414 1462 aaKnown RBP13.99□□□□□ -0.17
SF3A1-207ENST00000471342 PRR36Q9H6K5 1346 aa13.98□□□□□ -0.17
SF3A1-207ENST00000471342 BCANQ96GW7 911 aa13.98□□□□□ -0.17
SF3A1-207ENST00000471342 ADGRB2O60241 1585 aa13.97□□□□□ -0.17
SF3A1-207ENST00000471342 ZNF316A6NFI3 1004 aaPredicted RBP13.97□□□□□ -0.17
SF3A1-207ENST00000471342 CCDC7Q96M83 1385 aa13.96□□□□□ -0.17
SF3A1-207ENST00000471342 SAFB2Q14151 953 aaKnown RBP eCLIP13.96□□□□□ -0.17
SF3A1-207ENST00000471342 DMRT2Q9Y5R5 561 aa13.96□□□□□ -0.17
SF3A1-207ENST00000471342 XIRP1Q702N8 1843 aaKnown RBP13.96□□□□□ -0.17
SF3A1-207ENST00000471342 TMEM94Q12767 1356 aa13.96□□□□□ -0.18
SF3A1-207ENST00000471342 NCOA3Q9Y6Q9 1424 aa13.95□□□□□ -0.18
SF3A1-207ENST00000471342 MINK1Q8N4C8 1332 aaPredicted RBP13.94□□□□□ -0.18
SF3A1-207ENST00000471342 PUS7Q96PZ0 661 aaKnown RBP13.94□□□□□ -0.18
SF3A1-207ENST00000471342 ADGRL3Q9HAR2 1447 aa13.94□□□□□ -0.18
SF3A1-207ENST00000471342 QRICH2Q9H0J4 1663 aa13.94□□□□□ -0.18
SF3A1-207ENST00000471342 WASLO00401 505 aaPredicted RBP13.93□□□□□ -0.18
SF3A1-207ENST00000471342 USP32Q8NFA0 1604 aa13.93□□□□□ -0.18
SF3A1-207ENST00000471342 CD163L1Q9NR16 1453 aa13.93□□□□□ -0.18
SF3A1-207ENST00000471342 CDK19Q9BWU1 502 aa13.92□□□□□ -0.18
SF3A1-207ENST00000471342 EIF3AQ14152 1382 aaKnown RBP13.92□□□□□ -0.18
SF3A1-207ENST00000471342 NALCNQ8IZF0 1738 aa13.92□□□□□ -0.18
SF3A1-207ENST00000471342 CABP2Q9NPB3 220 aa13.91□□□□□ -0.18
SF3A1-207ENST00000471342 POGKQ9P215 609 aa13.91□□□□□ -0.18
SF3A1-207ENST00000471342 ATP7BP35670 1465 aa13.91□□□□□ -0.18
SF3A1-207ENST00000471342 PER1O15534 1290 aaPredicted RBP13.9□□□□□ -0.18
SF3A1-207ENST00000471342 PROSER2Q86WR7 435 aaPredicted RBP13.9□□□□□ -0.18
SF3A1-207ENST00000471342 CDC42BPGQ6DT37 1551 aa13.89□□□□□ -0.19
SF3A1-207ENST00000471342 CARD14Q9BXL6 1004 aa13.89□□□□□ -0.19
SF3A1-207ENST00000471342 C19orf44Q9H6X5 657 aa13.88□□□□□ -0.19
SF3A1-207ENST00000471342 MST1RQ04912 1400 aa13.88□□□□□ -0.19
SF3A1-207ENST00000471342 MYOM1P52179 1685 aa13.88□□□□□ -0.19
SF3A1-207ENST00000471342 TMF1P82094 1093 aa13.87□□□□□ -0.19
SF3A1-207ENST00000471342 EVC2Q86UK5 1308 aa13.87□□□□□ -0.19
SF3A1-207ENST00000471342 SLC12A5Q9H2X9 1139 aa13.86□□□□□ -0.19
SF3A1-207ENST00000471342 DCCP43146 1447 aa13.86□□□□□ -0.19
SF3A1-207ENST00000471342 CPSF1Q10570 1443 aaKnown RBP13.86□□□□□ -0.19
SF3A1-207ENST00000471342 SSH2Q76I76 1423 aa13.86□□□□□ -0.19
SF3A1-207ENST00000471342 FMN2Q9NZ56 1722 aa13.85□□□□□ -0.19
SF3A1-207ENST00000471342 PLEKHG3A1L390 1219 aa13.85□□□□□ -0.19
SF3A1-207ENST00000471342 NUDT16Q96DE0 195 aaKnown RBP13.85□□□□□ -0.19
SF3A1-207ENST00000471342 ANKARQ7Z5J8 1434 aa13.84□□□□□ -0.19
SF3A1-207ENST00000471342 C1orf167Q5SNV9 1468 aa13.84□□□□□ -0.19
SF3A1-207ENST00000471342 TOPAZ1Q8N9V7 1692 aa13.84□□□□□ -0.19
SF3A1-207ENST00000471342 ORAI2Q96SN7 254 aa13.83□□□□□ -0.2
SF3A1-207ENST00000471342 POLR3AO14802 1390 aaPredicted RBP13.83□□□□□ -0.2
SF3A1-207ENST00000471342 CABP1Q9NZU7 370 aa13.82□□□□□ -0.2
SF3A1-207ENST00000471342 CCDC61Q9Y6R9 512 aa13.82□□□□□ -0.2
SF3A1-207ENST00000471342 SLC24A1O60721 1099 aa13.81□□□□□ -0.2
SF3A1-207ENST00000471342 DDX10Q13206 875 aaKnown RBP13.81□□□□□ -0.2
SF3A1-207ENST00000471342 ATAD2Q6PL18 1390 aa13.81□□□□□ -0.2
SF3A1-207ENST00000471342 NUTM2FA1L443 756 aa13.8□□□□□ -0.2
SF3A1-207ENST00000471342 PANK3Q9H999 370 aa13.8□□□□□ -0.2
SF3A1-207ENST00000471342 A0A1W2PP64 1363 aa13.8□□□□□ -0.2
SF3A1-207ENST00000471342 SRPK2P78362 688 aaKnown RBP13.78□□□□□ -0.2
SF3A1-207ENST00000471342 AMER1Q5JTC6 1135 aaPredicted RBP13.78□□□□□ -0.2
SF3A1-207ENST00000471342 ANKRD36BQ8N2N9 1353 aa13.78□□□□□ -0.2
SF3A1-207ENST00000471342 PPIP5K1Q6PFW1 1433 aa13.78□□□□□ -0.2
SF3A1-207ENST00000471342 BRINP3Q76B58 766 aa13.77□□□□□ -0.21
SF3A1-207ENST00000471342 RGPD8O14715 1765 aaPredicted RBP13.76□□□□□ -0.21
SF3A1-207ENST00000471342 IQSEC2Q5JU85 1478 aa13.76□□□□□ -0.21
SF3A1-207ENST00000471342 MSH6P52701 1360 aa13.76□□□□□ -0.21
SF3A1-207ENST00000471342 NINLQ9Y2I6 1382 aa13.76□□□□□ -0.21
SF3A1-207ENST00000471342 ACEP12821 1306 aa13.76□□□□□ -0.21
SF3A1-207ENST00000471342 CDCA8Q53HL2 280 aa13.76□□□□□ -0.21
SF3A1-207ENST00000471342 CERKQ8TCT0 537 aa13.76□□□□□ -0.21
SF3A1-207ENST00000471342 SLAIN2Q9P270 581 aa13.76□□□□□ -0.21
SF3A1-207ENST00000471342 CADPS2Q86UW7 1296 aa13.75□□□□□ -0.21
SF3A1-207ENST00000471342 DDX17Q92841 729 aaKnown RBP13.75□□□□□ -0.21
SF3A1-207ENST00000471342 PMFBP1Q8TBY8 1022 aa13.74□□□□□ -0.21
SF3A1-207ENST00000471342 PHF8Q9UPP1 1060 aa13.74□□□□□ -0.21
SF3A1-207ENST00000471342 USP6P35125 1406 aa13.73□□□□□ -0.21
SF3A1-207ENST00000471342 FBXO41Q8TF61 875 aa13.73□□□□□ -0.21
SF3A1-207ENST00000471342 NRKQ7Z2Y5 1582 aa13.73□□□□□ -0.21
SF3A1-207ENST00000471342 PXDNQ92626 1479 aa13.73□□□□□ -0.21
SF3A1-207ENST00000471342 FYB1O15117 783 aa13.72□□□□□ -0.21
SF3A1-207ENST00000471342 ATF3P18847 181 aa13.72□□□□□ -0.21
SF3A1-207ENST00000471342 ZRANB1Q9UGI0 708 aa13.72□□□□□ -0.21
SF3A1-207ENST00000471342 NPC1L1Q9UHC9 1359 aa13.71□□□□□ -0.21
SF3A1-207ENST00000471342 SOS2Q07890 1332 aaPredicted RBP13.71□□□□□ -0.21
SF3A1-207ENST00000471342 ESCO1Q5FWF5 840 aa13.71□□□□□ -0.21
SF3A1-207ENST00000471342 FOXO3O43524 673 aa13.7□□□□□ -0.22
SF3A1-207ENST00000471342 TMC1Q8TDI8 760 aa13.7□□□□□ -0.22
SF3A1-207ENST00000471342 NSD3Q9BZ95 1437 aa13.7□□□□□ -0.22
SF3A1-207ENST00000471342 AKAP12Q02952 1782 aa13.7□□□□□ -0.22
SF3A1-207ENST00000471342 TTC21BQ7Z4L5 1316 aa13.69□□□□□ -0.22
SF3A1-207ENST00000471342 C14orf37Q86TY3 774 aa13.69□□□□□ -0.22
SF3A1-207ENST00000471342 POLR3GLQ9BT43 218 aa13.69□□□□□ -0.22
SF3A1-207ENST00000471342 EDC4Q6P2E9 1401 aaKnown RBP13.69□□□□□ -0.22
SF3A1-207ENST00000471342 MON2Q7Z3U7 1717 aa13.69□□□□□ -0.22
SF3A1-207ENST00000471342 TRPM3Q9HCF6 1732 aaPredicted RBP13.69□□□□□ -0.22
SF3A1-207ENST00000471342 USP31Q70CQ4 1352 aa13.68□□□□□ -0.22
SF3A1-207ENST00000471342 NME9Q86XW9 330 aa13.67□□□□□ -0.22
SF3A1-207ENST00000471342 ZNF692Q9BU19 519 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-207ENST00000471342 KTN1Q86UP2 1357 aaKnown RBP13.67□□□□□ -0.22
SF3A1-207ENST00000471342 MARF1Q9Y4F3 1742 aaKnown RBP13.67□□□□□ -0.22
SF3A1-207ENST00000471342 OVOS2A0A0J9YW53 1432 aa13.66□□□□□ -0.22
SF3A1-207ENST00000471342 OVOS2Q6IE36 1432 aa13.66□□□□□ -0.22
SF3A1-207ENST00000471342 XPCQ01831 940 aaPredicted RBP13.66□□□□□ -0.22
SF3A1-207ENST00000471342 PARD3Q8TEW0 1356 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms