RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SAFB2Q14151 953 aaKnown RBP eCLIP17.02■□□□□ 0.32
VPS13D-204ENST00000469054 GPRASP1Q5JY77 1395 aa17.02■□□□□ 0.31
VPS13D-204ENST00000469054 XIRP1Q702N8 1843 aaKnown RBP17.01■□□□□ 0.31
VPS13D-204ENST00000469054 PIP4K2BP78356 416 aa17.01■□□□□ 0.31
VPS13D-204ENST00000469054 DCCP43146 1447 aa17■□□□□ 0.31
VPS13D-204ENST00000469054 KNDC1Q76NI1 1749 aa17■□□□□ 0.31
VPS13D-204ENST00000469054 CARD11Q9BXL7 1154 aa17■□□□□ 0.31
VPS13D-204ENST00000469054 SLAIN2Q9P270 581 aa17■□□□□ 0.31
VPS13D-204ENST00000469054 TRPM1Q7Z4N2 1603 aa16.99■□□□□ 0.31
VPS13D-204ENST00000469054 RALGAPBQ86X10 1494 aa16.99■□□□□ 0.31
VPS13D-204ENST00000469054 SCAF1Q9H7N4 1312 aaKnown RBP16.98■□□□□ 0.31
VPS13D-204ENST00000469054 ILDR1Q86SU0 546 aaPredicted RBP16.98■□□□□ 0.31
VPS13D-204ENST00000469054 HIRIP3Q9BW71 556 aaPredicted RBP16.95■□□□□ 0.3
VPS13D-204ENST00000469054 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.95■□□□□ 0.3
VPS13D-204ENST00000469054 MINK1Q8N4C8 1332 aaPredicted RBP16.95■□□□□ 0.3
VPS13D-204ENST00000469054 CENPJQ9HC77 1338 aaPredicted RBP16.95■□□□□ 0.3
VPS13D-204ENST00000469054 MST1RQ04912 1400 aa16.94■□□□□ 0.3
VPS13D-204ENST00000469054 EIF3AQ14152 1382 aaKnown RBP16.93■□□□□ 0.3
VPS13D-204ENST00000469054 NALCNQ8IZF0 1738 aa16.93■□□□□ 0.3
VPS13D-204ENST00000469054 NUTM2FA1L443 756 aa16.91■□□□□ 0.3
VPS13D-204ENST00000469054 WASLO00401 505 aaPredicted RBP16.91■□□□□ 0.3
VPS13D-204ENST00000469054 C1orf167Q5SNV9 1468 aa16.91■□□□□ 0.3
VPS13D-204ENST00000469054 ARHGEF28Q8N1W1 1705 aaKnown RBP16.9■□□□□ 0.3
VPS13D-204ENST00000469054 CDC42BPGQ6DT37 1551 aa16.9■□□□□ 0.3
VPS13D-204ENST00000469054 BRINP3Q76B58 766 aa16.9■□□□□ 0.3
VPS13D-204ENST00000469054 HSPA1LP34931 641 aa16.88■□□□□ 0.29
VPS13D-204ENST00000469054 ESCO1Q5FWF5 840 aa16.88■□□□□ 0.29
VPS13D-204ENST00000469054 ORAI2Q96SN7 254 aa16.88■□□□□ 0.29
VPS13D-204ENST00000469054 CDK19Q9BWU1 502 aa16.88■□□□□ 0.29
VPS13D-204ENST00000469054 ADGRB2O60241 1585 aa16.86■□□□□ 0.29
VPS13D-204ENST00000469054 ST20-MTHFSA0A0A6YYL1 179 aa16.86■□□□□ 0.29
VPS13D-204ENST00000469054 USP47Q96K76 1375 aa16.86■□□□□ 0.29
VPS13D-204ENST00000469054 EVC2Q86UK5 1308 aa16.84■□□□□ 0.29
VPS13D-204ENST00000469054 PRR36Q9H6K5 1346 aa16.84■□□□□ 0.29
VPS13D-204ENST00000469054 SBNO2Q9Y2G9 1366 aa16.84■□□□□ 0.29
VPS13D-204ENST00000469054 ANKARQ7Z5J8 1434 aa16.84■□□□□ 0.29
VPS13D-204ENST00000469054 SRPK2P78362 688 aaKnown RBP16.83■□□□□ 0.28
VPS13D-204ENST00000469054 NUDT16Q96DE0 195 aaKnown RBP16.83■□□□□ 0.28
VPS13D-204ENST00000469054 ROBO1Q9Y6N7 1651 aa16.83■□□□□ 0.28
VPS13D-204ENST00000469054 SLC24A1O60721 1099 aa16.82■□□□□ 0.28
VPS13D-204ENST00000469054 TESK2Q96S53 571 aa16.82■□□□□ 0.28
VPS13D-204ENST00000469054 CABP2Q9NPB3 220 aa16.82■□□□□ 0.28
VPS13D-204ENST00000469054 PHF8Q9UPP1 1060 aa16.82■□□□□ 0.28
VPS13D-204ENST00000469054 TULP4Q9NRJ4 1543 aa16.81■□□□□ 0.28
VPS13D-204ENST00000469054 DDX17Q92841 729 aaKnown RBP16.81■□□□□ 0.28
VPS13D-204ENST00000469054 CCDC61Q9Y6R9 512 aa16.81■□□□□ 0.28
VPS13D-204ENST00000469054 FMN2Q9NZ56 1722 aa16.81■□□□□ 0.28
VPS13D-204ENST00000469054 FOXO3O43524 673 aa16.8■□□□□ 0.28
VPS13D-204ENST00000469054 EIF4G2P78344 907 aaKnown RBP eCLIP16.8■□□□□ 0.28
VPS13D-204ENST00000469054 NPHP3Q7Z494 1330 aa16.79■□□□□ 0.28
VPS13D-204ENST00000469054 PMFBP1Q8TBY8 1022 aa16.79■□□□□ 0.28
VPS13D-204ENST00000469054 QRICH2Q9H0J4 1663 aa16.78■□□□□ 0.28
VPS13D-204ENST00000469054 ATP7BP35670 1465 aa16.78■□□□□ 0.28
VPS13D-204ENST00000469054 SOS2Q07890 1332 aaPredicted RBP16.77■□□□□ 0.28
VPS13D-204ENST00000469054 AHDC1Q5TGY3 1603 aaPredicted RBP16.77■□□□□ 0.27
VPS13D-204ENST00000469054 PLEKHG3A1L390 1219 aa16.76■□□□□ 0.27
VPS13D-204ENST00000469054 HSPA5P11021 654 aaKnown RBP16.76■□□□□ 0.27
VPS13D-204ENST00000469054 NGDNQ8NEJ9 315 aaKnown RBP16.76■□□□□ 0.27
VPS13D-204ENST00000469054 PUS7Q96PZ0 661 aaKnown RBP16.76■□□□□ 0.27
VPS13D-204ENST00000469054 USP32Q8NFA0 1604 aa16.75■□□□□ 0.27
VPS13D-204ENST00000469054 TMF1P82094 1093 aa16.75■□□□□ 0.27
VPS13D-204ENST00000469054 PPP4R3CPQ6ZMV5 832 aa16.75■□□□□ 0.27
VPS13D-204ENST00000469054 LRRC59Q96AG4 307 aaKnown RBP16.75■□□□□ 0.27
VPS13D-204ENST00000469054 ATAD2Q6PL18 1390 aa16.75■□□□□ 0.27
VPS13D-204ENST00000469054 XPCQ01831 940 aaPredicted RBP16.74■□□□□ 0.27
VPS13D-204ENST00000469054 PSME1Q06323 249 aa16.74■□□□□ 0.27
VPS13D-204ENST00000469054 KRT28Q7Z3Y7 464 aa16.74■□□□□ 0.27
VPS13D-204ENST00000469054 CABP1Q9NZU7 370 aa16.74■□□□□ 0.27
VPS13D-204ENST00000469054 ACEP12821 1306 aa16.72■□□□□ 0.27
VPS13D-204ENST00000469054 PPIP5K1Q6PFW1 1433 aa16.72■□□□□ 0.27
VPS13D-204ENST00000469054 JCADQ9P266 1359 aa16.72■□□□□ 0.27
VPS13D-204ENST00000469054 NHSL1Q5SYE7 1610 aa16.71■□□□□ 0.27
VPS13D-204ENST00000469054 CDCA8Q53HL2 280 aa16.71■□□□□ 0.27
VPS13D-204ENST00000469054 DISP3Q9P2K9 1392 aa16.71■□□□□ 0.27
VPS13D-204ENST00000469054 COL16A1Q07092 1604 aaPredicted RBP16.7■□□□□ 0.26
VPS13D-204ENST00000469054 PHLPP1O60346 1717 aa16.7■□□□□ 0.26
VPS13D-204ENST00000469054 KIF1AQ12756 1690 aa16.7■□□□□ 0.26
VPS13D-204ENST00000469054 PXDNQ92626 1479 aa16.7■□□□□ 0.26
VPS13D-204ENST00000469054 POLR3AO14802 1390 aaPredicted RBP16.7■□□□□ 0.26
VPS13D-204ENST00000469054 ZEB1P37275 1124 aaPredicted RBP16.7■□□□□ 0.26
VPS13D-204ENST00000469054 TMC1Q8TDI8 760 aa16.69■□□□□ 0.26
VPS13D-204ENST00000469054 RGPD8O14715 1765 aaPredicted RBP16.69■□□□□ 0.26
VPS13D-204ENST00000469054 SLC12A5Q9H2X9 1139 aa16.68■□□□□ 0.26
VPS13D-204ENST00000469054 SPATA31A3Q5VYP0 1347 aa16.68■□□□□ 0.26
VPS13D-204ENST00000469054 SBNO1A3KN83 1393 aa16.67■□□□□ 0.26
VPS13D-204ENST00000469054 ZNF692Q9BU19 519 aaPredicted RBP16.67■□□□□ 0.26
VPS13D-204ENST00000469054 MAPK8IP2Q13387 824 aaPredicted RBP16.66■□□□□ 0.26
VPS13D-204ENST00000469054 PNPLA6Q8IY17 1366 aa16.65■□□□□ 0.26
VPS13D-204ENST00000469054 PAK3O75914 559 aaPredicted RBP16.65■□□□□ 0.26
VPS13D-204ENST00000469054 TOPAZ1Q8N9V7 1692 aa16.65■□□□□ 0.26
VPS13D-204ENST00000469054 SPATA31A6Q5VVP1 1343 aa16.65■□□□□ 0.26
VPS13D-204ENST00000469054 NINLQ9Y2I6 1382 aa16.64■□□□□ 0.26
VPS13D-204ENST00000469054 LMOD2Q6P5Q4 547 aa16.64■□□□□ 0.25
VPS13D-204ENST00000469054 ITSN1Q15811 1721 aa16.64■□□□□ 0.25
VPS13D-204ENST00000469054 TNS3Q68CZ2 1445 aa16.63■□□□□ 0.25
VPS13D-204ENST00000469054 TERF2IPQ9NYB0 399 aa16.63■□□□□ 0.25
VPS13D-204ENST00000469054 CPSF1Q10570 1443 aaKnown RBP16.62■□□□□ 0.25
VPS13D-204ENST00000469054 C11orf95C9JLR9 678 aaPredicted RBP16.62■□□□□ 0.25
VPS13D-204ENST00000469054 HDGFL2Q7Z4V5 671 aaPredicted RBP16.62■□□□□ 0.25
VPS13D-204ENST00000469054 POLR3GLQ9BT43 218 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms