RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 KIAA1210Q9ULL0 1709 aa17.23■□□□□ 0.35
SHROOM3-202ENST00000466541 NBPF8Q3BBV2 869 aa17.22■□□□□ 0.35
SHROOM3-202ENST00000466541 HIRIP3Q9BW71 556 aaPredicted RBP17.22■□□□□ 0.35
SHROOM3-202ENST00000466541 MINK1Q8N4C8 1332 aaPredicted RBP17.21■□□□□ 0.34
SHROOM3-202ENST00000466541 FAM135BQ49AJ0 1406 aa17.2■□□□□ 0.34
SHROOM3-202ENST00000466541 TRPM1Q7Z4N2 1603 aa17.19■□□□□ 0.34
SHROOM3-202ENST00000466541 SIRT1Q96EB6 747 aa17.19■□□□□ 0.34
SHROOM3-202ENST00000466541 DCCP43146 1447 aa17.19■□□□□ 0.34
SHROOM3-202ENST00000466541 MST1RQ04912 1400 aa17.19■□□□□ 0.34
SHROOM3-202ENST00000466541 ROCK2O75116 1388 aaKnown RBP17.18■□□□□ 0.34
SHROOM3-202ENST00000466541 ARHGEF28Q8N1W1 1705 aaKnown RBP17.18■□□□□ 0.34
SHROOM3-202ENST00000466541 DLC1Q96QB1 1528 aa17.17■□□□□ 0.34
SHROOM3-202ENST00000466541 BRINP3Q76B58 766 aa17.17■□□□□ 0.34
SHROOM3-202ENST00000466541 PHLPP1O60346 1717 aa17.16■□□□□ 0.34
SHROOM3-202ENST00000466541 DDX17Q92841 729 aaKnown RBP17.16■□□□□ 0.34
SHROOM3-202ENST00000466541 CLSPNQ9HAW4 1339 aa17.16■□□□□ 0.34
SHROOM3-202ENST00000466541 ESCO1Q5FWF5 840 aa17.15■□□□□ 0.34
SHROOM3-202ENST00000466541 ORAI2Q96SN7 254 aa17.15■□□□□ 0.34
SHROOM3-202ENST00000466541 C1orf167Q5SNV9 1468 aa17.15■□□□□ 0.34
SHROOM3-202ENST00000466541 RGPD8O14715 1765 aaPredicted RBP17.14■□□□□ 0.33
SHROOM3-202ENST00000466541 CDC42BPGQ6DT37 1551 aa17.14■□□□□ 0.33
SHROOM3-202ENST00000466541 CARD11Q9BXL7 1154 aa17.13■□□□□ 0.33
SHROOM3-202ENST00000466541 FMN2Q9NZ56 1722 aa17.12■□□□□ 0.33
SHROOM3-202ENST00000466541 CENPJQ9HC77 1338 aaPredicted RBP17.1■□□□□ 0.33
SHROOM3-202ENST00000466541 WASLO00401 505 aaPredicted RBP17.09■□□□□ 0.33
SHROOM3-202ENST00000466541 QRICH2Q9H0J4 1663 aa17.09■□□□□ 0.33
SHROOM3-202ENST00000466541 XPCQ01831 940 aaPredicted RBP17.08■□□□□ 0.32
SHROOM3-202ENST00000466541 RALGAPBQ86X10 1494 aa17.07■□□□□ 0.32
SHROOM3-202ENST00000466541 FOXO3O43524 673 aa17.07■□□□□ 0.32
SHROOM3-202ENST00000466541 CDK19Q9BWU1 502 aa17.07■□□□□ 0.32
SHROOM3-202ENST00000466541 EIF3AQ14152 1382 aaKnown RBP17.06■□□□□ 0.32
SHROOM3-202ENST00000466541 PMFBP1Q8TBY8 1022 aa17.06■□□□□ 0.32
SHROOM3-202ENST00000466541 NHSL1Q5SYE7 1610 aa17.06■□□□□ 0.32
SHROOM3-202ENST00000466541 AHDC1Q5TGY3 1603 aaPredicted RBP17.06■□□□□ 0.32
SHROOM3-202ENST00000466541 ADGRB2O60241 1585 aa17.06■□□□□ 0.32
SHROOM3-202ENST00000466541 SRPK2P78362 688 aaKnown RBP17.05■□□□□ 0.32
SHROOM3-202ENST00000466541 TIMELESSQ9UNS1 1208 aa17.05■□□□□ 0.32
SHROOM3-202ENST00000466541 PHF8Q9UPP1 1060 aa17.05■□□□□ 0.32
SHROOM3-202ENST00000466541 COL16A1Q07092 1604 aaPredicted RBP17.05■□□□□ 0.32
SHROOM3-202ENST00000466541 GPRASP1Q5JY77 1395 aa17.03■□□□□ 0.32
SHROOM3-202ENST00000466541 USP32Q8NFA0 1604 aa17.03■□□□□ 0.32
SHROOM3-202ENST00000466541 PRR36Q9H6K5 1346 aa17.03■□□□□ 0.32
SHROOM3-202ENST00000466541 NUDT16Q96DE0 195 aaKnown RBP17.03■□□□□ 0.32
SHROOM3-202ENST00000466541 CABP2Q9NPB3 220 aa17.03■□□□□ 0.32
SHROOM3-202ENST00000466541 TULP4Q9NRJ4 1543 aa17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 NPHP3Q7Z494 1330 aa17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 NUTM2BA6NNL0 878 aaPredicted RBP17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 NUTM2EB1AL46 878 aaPredicted RBP17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 PLEKHG5O94827 1062 aa17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 PSME1Q06323 249 aa17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 NUTM2AQ8IVF1 878 aaPredicted RBP17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 LRRC59Q96AG4 307 aaKnown RBP17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 JCADQ9P266 1359 aa17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 KIF1AQ12756 1690 aa17.01■□□□□ 0.31
SHROOM3-202ENST00000466541 ANKARQ7Z5J8 1434 aa17■□□□□ 0.31
SHROOM3-202ENST00000466541 NGDNQ8NEJ9 315 aaKnown RBP17■□□□□ 0.31
SHROOM3-202ENST00000466541 EVC2Q86UK5 1308 aa16.99■□□□□ 0.31
SHROOM3-202ENST00000466541 LMOD2Q6P5Q4 547 aa16.99■□□□□ 0.31
SHROOM3-202ENST00000466541 KRT28Q7Z3Y7 464 aa16.99■□□□□ 0.31
SHROOM3-202ENST00000466541 DISP3Q9P2K9 1392 aa16.99■□□□□ 0.31
SHROOM3-202ENST00000466541 ST20-MTHFSA0A0A6YYL1 179 aa16.98■□□□□ 0.31
SHROOM3-202ENST00000466541 ITSN1Q15811 1721 aa16.98■□□□□ 0.31
SHROOM3-202ENST00000466541 SOS2Q07890 1332 aaPredicted RBP16.97■□□□□ 0.31
SHROOM3-202ENST00000466541 MED1Q15648 1581 aaPredicted RBP16.97■□□□□ 0.31
SHROOM3-202ENST00000466541 MEX3CQ5U5Q3 659 aaKnown RBP16.96■□□□□ 0.31
SHROOM3-202ENST00000466541 PHF23Q9BUL5 403 aaPredicted RBP16.96■□□□□ 0.31
SHROOM3-202ENST00000466541 ATP7BP35670 1465 aa16.96■□□□□ 0.31
SHROOM3-202ENST00000466541 SHPRHQ149N8 1683 aa16.95■□□□□ 0.3
SHROOM3-202ENST00000466541 PXDNQ92626 1479 aa16.95■□□□□ 0.3
SHROOM3-202ENST00000466541 USP47Q96K76 1375 aa16.95■□□□□ 0.3
SHROOM3-202ENST00000466541 PAK3O75914 559 aaPredicted RBP16.95■□□□□ 0.3
SHROOM3-202ENST00000466541 CCDC61Q9Y6R9 512 aa16.95■□□□□ 0.3
SHROOM3-202ENST00000466541 PPIP5K1Q6PFW1 1433 aa16.94■□□□□ 0.3
SHROOM3-202ENST00000466541 PNPLA6Q8IY17 1366 aa16.92■□□□□ 0.3
SHROOM3-202ENST00000466541 TOPAZ1Q8N9V7 1692 aa16.92■□□□□ 0.3
SHROOM3-202ENST00000466541 CABP1Q9NZU7 370 aa16.92■□□□□ 0.3
SHROOM3-202ENST00000466541 ACEP12821 1306 aa16.92■□□□□ 0.3
SHROOM3-202ENST00000466541 SPATA31A6Q5VVP1 1343 aa16.92■□□□□ 0.3
SHROOM3-202ENST00000466541 ADAMTS2O95450 1211 aa16.91■□□□□ 0.3
SHROOM3-202ENST00000466541 TMC1Q8TDI8 760 aa16.91■□□□□ 0.3
SHROOM3-202ENST00000466541 SPATA31A3Q5VYP0 1347 aa16.9■□□□□ 0.3
SHROOM3-202ENST00000466541 LRP6O75581 1613 aa16.89■□□□□ 0.29
SHROOM3-202ENST00000466541 PLEKHG3A1L390 1219 aa16.89■□□□□ 0.29
SHROOM3-202ENST00000466541 HAP1P54257 671 aaPredicted RBP16.89■□□□□ 0.29
SHROOM3-202ENST00000466541 NUTM2GQ5VZR2 741 aa16.88■□□□□ 0.29
SHROOM3-202ENST00000466541 CABLES1Q8TDN4 633 aa16.88■□□□□ 0.29
SHROOM3-202ENST00000466541 TESK2Q96S53 571 aa16.88■□□□□ 0.29
SHROOM3-202ENST00000466541 TNS3Q68CZ2 1445 aa16.87■□□□□ 0.29
SHROOM3-202ENST00000466541 C8orf37Q96NL8 207 aa16.87■□□□□ 0.29
SHROOM3-202ENST00000466541 SBNO1A3KN83 1393 aa16.87■□□□□ 0.29
SHROOM3-202ENST00000466541 SBNO2Q9Y2G9 1366 aa16.87■□□□□ 0.29
SHROOM3-202ENST00000466541 POLR3GLQ9BT43 218 aa16.86■□□□□ 0.29
SHROOM3-202ENST00000466541 TRPM3Q9HCF6 1732 aaPredicted RBP16.86■□□□□ 0.29
SHROOM3-202ENST00000466541 ATAD2Q6PL18 1390 aa16.86■□□□□ 0.29
SHROOM3-202ENST00000466541 HSPA5P11021 654 aaKnown RBP16.85■□□□□ 0.29
SHROOM3-202ENST00000466541 TMF1P82094 1093 aa16.85■□□□□ 0.29
SHROOM3-202ENST00000466541 POLR3AO14802 1390 aaPredicted RBP16.85■□□□□ 0.29
SHROOM3-202ENST00000466541 EIF4G2P78344 907 aaKnown RBP eCLIP16.84■□□□□ 0.29
SHROOM3-202ENST00000466541 SLC12A5Q9H2X9 1139 aa16.84■□□□□ 0.29
SHROOM3-202ENST00000466541 COL22A1Q8NFW1 1626 aaPredicted RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms