RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 TECPR2O15040 1411 aa18.91■□□□□ 0.62
COL28A1-206ENST00000465339 SIRT1Q96EB6 747 aa18.9■□□□□ 0.62
COL28A1-206ENST00000465339 KNDC1Q76NI1 1749 aa18.9■□□□□ 0.62
COL28A1-206ENST00000465339 NALCNQ8IZF0 1738 aa18.9■□□□□ 0.62
COL28A1-206ENST00000465339 YTHDC2Q9H6S0 1430 aaKnown RBP18.9■□□□□ 0.62
COL28A1-206ENST00000465339 ASXL1Q8IXJ9 1541 aa18.9■□□□□ 0.62
COL28A1-206ENST00000465339 CACNB1Q02641 598 aaPredicted RBP18.89■□□□□ 0.61
COL28A1-206ENST00000465339 WAPLQ7Z5K2 1190 aa18.85■□□□□ 0.61
COL28A1-206ENST00000465339 SIN3AQ96ST3 1273 aa18.85■□□□□ 0.61
COL28A1-206ENST00000465339 FOXD4L1Q9NU39 408 aa18.85■□□□□ 0.61
COL28A1-206ENST00000465339 MST1RQ04912 1400 aa18.84■□□□□ 0.61
COL28A1-206ENST00000465339 ZBTB22O15209 634 aa18.83■□□□□ 0.6
COL28A1-206ENST00000465339 NEUROD1Q13562 356 aa18.83■□□□□ 0.6
COL28A1-206ENST00000465339 PHLPP1O60346 1717 aa18.83■□□□□ 0.6
COL28A1-206ENST00000465339 ADGRB1O14514 1584 aa18.82■□□□□ 0.6
COL28A1-206ENST00000465339 BRINP3Q76B58 766 aa18.82■□□□□ 0.6
COL28A1-206ENST00000465339 DLC1Q96QB1 1528 aa18.81■□□□□ 0.6
COL28A1-206ENST00000465339 KIAA1210Q9ULL0 1709 aa18.81■□□□□ 0.6
COL28A1-206ENST00000465339 L3MBTL2Q969R5 705 aa18.81■□□□□ 0.6
COL28A1-206ENST00000465339 CDC42BPGQ6DT37 1551 aa18.8■□□□□ 0.6
COL28A1-206ENST00000465339 PLEKHH1Q9ULM0 1364 aa18.8■□□□□ 0.6
COL28A1-206ENST00000465339 POGKQ9P215 609 aa18.79■□□□□ 0.6
COL28A1-206ENST00000465339 AHDC1Q5TGY3 1603 aaPredicted RBP18.78■□□□□ 0.6
COL28A1-206ENST00000465339 C1orf167Q5SNV9 1468 aa18.78■□□□□ 0.6
COL28A1-206ENST00000465339 PRAM1Q96QH2 718 aa18.78■□□□□ 0.6
COL28A1-206ENST00000465339 TRAK1Q9UPV9 953 aa18.78■□□□□ 0.6
COL28A1-206ENST00000465339 DISP3Q9P2K9 1392 aa18.76■□□□□ 0.59
COL28A1-206ENST00000465339 COL16A1Q07092 1604 aaPredicted RBP18.75■□□□□ 0.59
COL28A1-206ENST00000465339 NHSL1Q5SYE7 1610 aa18.74■□□□□ 0.59
COL28A1-206ENST00000465339 PCGF6Q9BYE7 350 aa18.74■□□□□ 0.59
COL28A1-206ENST00000465339 JCADQ9P266 1359 aa18.73■□□□□ 0.59
COL28A1-206ENST00000465339 SAFB2Q14151 953 aaKnown RBP eCLIP18.73■□□□□ 0.59
COL28A1-206ENST00000465339 ORAI2Q96SN7 254 aa18.73■□□□□ 0.59
COL28A1-206ENST00000465339 FMN2Q9NZ56 1722 aa18.73■□□□□ 0.59
COL28A1-206ENST00000465339 MED1Q15648 1581 aaPredicted RBP18.72■□□□□ 0.59
COL28A1-206ENST00000465339 NBPF1Q3BBV0 1214 aa18.72■□□□□ 0.59
COL28A1-206ENST00000465339 ESCO1Q5FWF5 840 aa18.71■□□□□ 0.59
COL28A1-206ENST00000465339 ARHGEF28Q8N1W1 1705 aaKnown RBP18.71■□□□□ 0.59
COL28A1-206ENST00000465339 MYCNP04198 464 aaPredicted RBP18.7■□□□□ 0.58
COL28A1-206ENST00000465339 LRRC59Q96AG4 307 aaKnown RBP18.7■□□□□ 0.58
COL28A1-206ENST00000465339 TONSLQ96HA7 1378 aa18.68■□□□□ 0.58
COL28A1-206ENST00000465339 ADGRB2O60241 1585 aa18.68■□□□□ 0.58
COL28A1-206ENST00000465339 NUTM2FA1L443 756 aa18.68■□□□□ 0.58
COL28A1-206ENST00000465339 RGPD8O14715 1765 aaPredicted RBP18.68■□□□□ 0.58
COL28A1-206ENST00000465339 TRPM1Q7Z4N2 1603 aa18.67■□□□□ 0.58
COL28A1-206ENST00000465339 SHPRHQ149N8 1683 aa18.67■□□□□ 0.58
COL28A1-206ENST00000465339 DDX17Q92841 729 aaKnown RBP18.67■□□□□ 0.58
COL28A1-206ENST00000465339 SPATA31A6Q5VVP1 1343 aa18.67■□□□□ 0.58
COL28A1-206ENST00000465339 MINK1Q8N4C8 1332 aaPredicted RBP18.67■□□□□ 0.58
COL28A1-206ENST00000465339 SOS2Q07890 1332 aaPredicted RBP18.66■□□□□ 0.58
COL28A1-206ENST00000465339 NPHP3Q7Z494 1330 aa18.66■□□□□ 0.58
COL28A1-206ENST00000465339 HIRIP3Q9BW71 556 aaPredicted RBP18.65■□□□□ 0.58
COL28A1-206ENST00000465339 EIF3AQ14152 1382 aaKnown RBP18.65■□□□□ 0.58
COL28A1-206ENST00000465339 KIF1AQ12756 1690 aa18.64■□□□□ 0.57
COL28A1-206ENST00000465339 WASLO00401 505 aaPredicted RBP18.64■□□□□ 0.57
COL28A1-206ENST00000465339 ANKARQ7Z5J8 1434 aa18.64■□□□□ 0.57
COL28A1-206ENST00000465339 FOXO3O43524 673 aa18.63■□□□□ 0.57
COL28A1-206ENST00000465339 CLSPNQ9HAW4 1339 aa18.63■□□□□ 0.57
COL28A1-206ENST00000465339 NBPF8Q3BBV2 869 aa18.62■□□□□ 0.57
COL28A1-206ENST00000465339 ROCK2O75116 1388 aaKnown RBP18.61■□□□□ 0.57
COL28A1-206ENST00000465339 PHF8Q9UPP1 1060 aa18.61■□□□□ 0.57
COL28A1-206ENST00000465339 USP32Q8NFA0 1604 aa18.6■□□□□ 0.57
COL28A1-206ENST00000465339 CENPJQ9HC77 1338 aaPredicted RBP18.6■□□□□ 0.57
COL28A1-206ENST00000465339 TULP4Q9NRJ4 1543 aa18.59■□□□□ 0.57
COL28A1-206ENST00000465339 PXDNQ92626 1479 aa18.58■□□□□ 0.57
COL28A1-206ENST00000465339 PNPLA6Q8IY17 1366 aa18.58■□□□□ 0.57
COL28A1-206ENST00000465339 CDK19Q9BWU1 502 aa18.58■□□□□ 0.56
COL28A1-206ENST00000465339 TIMELESSQ9UNS1 1208 aa18.58■□□□□ 0.56
COL28A1-206ENST00000465339 GPRASP1Q5JY77 1395 aa18.57■□□□□ 0.56
COL28A1-206ENST00000465339 PSME1Q06323 249 aa18.57■□□□□ 0.56
COL28A1-206ENST00000465339 KRT28Q7Z3Y7 464 aa18.57■□□□□ 0.56
COL28A1-206ENST00000465339 PRR36Q9H6K5 1346 aa18.56■□□□□ 0.56
COL28A1-206ENST00000465339 XPCQ01831 940 aaPredicted RBP18.56■□□□□ 0.56
COL28A1-206ENST00000465339 QRICH2Q9H0J4 1663 aa18.56■□□□□ 0.56
COL28A1-206ENST00000465339 ITSN1Q15811 1721 aa18.55■□□□□ 0.56
COL28A1-206ENST00000465339 NUTM2BA6NNL0 878 aaPredicted RBP18.55■□□□□ 0.56
COL28A1-206ENST00000465339 NUTM2EB1AL46 878 aaPredicted RBP18.55■□□□□ 0.56
COL28A1-206ENST00000465339 MEX3CQ5U5Q3 659 aaKnown RBP18.55■□□□□ 0.56
COL28A1-206ENST00000465339 SAMD1Q6SPF0 538 aaPredicted RBP18.55■□□□□ 0.56
COL28A1-206ENST00000465339 NUTM2AQ8IVF1 878 aaPredicted RBP18.55■□□□□ 0.56
COL28A1-206ENST00000465339 PMFBP1Q8TBY8 1022 aa18.55■□□□□ 0.56
COL28A1-206ENST00000465339 NUDT16Q96DE0 195 aaKnown RBP18.55■□□□□ 0.56
COL28A1-206ENST00000465339 RALGAPBQ86X10 1494 aa18.54■□□□□ 0.56
COL28A1-206ENST00000465339 LRP6O75581 1613 aa18.54■□□□□ 0.56
COL28A1-206ENST00000465339 ILDR2Q71H61 639 aa18.54■□□□□ 0.56
COL28A1-206ENST00000465339 CARD11Q9BXL7 1154 aa18.54■□□□□ 0.56
COL28A1-206ENST00000465339 SPINK5Q9NQ38 1064 aaPredicted RBP18.54■□□□□ 0.56
COL28A1-206ENST00000465339 COL22A1Q8NFW1 1626 aaPredicted RBP18.53■□□□□ 0.56
COL28A1-206ENST00000465339 RGS17Q9UGC6 210 aaPredicted RBP18.53■□□□□ 0.56
COL28A1-206ENST00000465339 SPATA31A3Q5VYP0 1347 aa18.52■□□□□ 0.56
COL28A1-206ENST00000465339 CCER1Q8TC90 406 aaPredicted RBP18.52■□□□□ 0.56
COL28A1-206ENST00000465339 CCDC61Q9Y6R9 512 aa18.52■□□□□ 0.56
COL28A1-206ENST00000465339 ATP7BP35670 1465 aa18.52■□□□□ 0.55
COL28A1-206ENST00000465339 NGDNQ8NEJ9 315 aaKnown RBP18.51■□□□□ 0.55
COL28A1-206ENST00000465339 SRPK2P78362 688 aaKnown RBP18.5■□□□□ 0.55
COL28A1-206ENST00000465339 SBNO1A3KN83 1393 aa18.5■□□□□ 0.55
COL28A1-206ENST00000465339 EVC2Q86UK5 1308 aa18.49■□□□□ 0.55
COL28A1-206ENST00000465339 PLEKHG3A1L390 1219 aa18.48■□□□□ 0.55
COL28A1-206ENST00000465339 TOPAZ1Q8N9V7 1692 aa18.47■□□□□ 0.55
COL28A1-206ENST00000465339 CAPN15O75808 1086 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms