RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 DNAJC5BQ9UF47 199 aa18.12■□□□□ 0.49
PTPRU-205ENST00000460170 NEXNQ0ZGT2 675 aa18.12■□□□□ 0.49
PTPRU-205ENST00000460170 RUFY2Q8WXA3 655 aa18.12■□□□□ 0.49
PTPRU-205ENST00000460170 GRIN2AQ12879 1464 aa18.11■□□□□ 0.49
PTPRU-205ENST00000460170 TSR2Q969E8 191 aaKnown RBP18.11■□□□□ 0.49
PTPRU-205ENST00000460170 RPGRIP1LQ68CZ1 1315 aa18.1■□□□□ 0.49
PTPRU-205ENST00000460170 ANO2Q9NQ90 1003 aa18.1■□□□□ 0.49
PTPRU-205ENST00000460170 NINLQ9Y2I6 1382 aa18.1■□□□□ 0.49
PTPRU-205ENST00000460170 PSME1Q06323 249 aa18.1■□□□□ 0.49
PTPRU-205ENST00000460170 CDC45O75419 566 aa18.09■□□□□ 0.49
PTPRU-205ENST00000460170 CT47B1P0C2W7 299 aaPredicted RBP18.09■□□□□ 0.49
PTPRU-205ENST00000460170 FOXD4L6Q3SYB3 417 aaPredicted RBP18.09■□□□□ 0.49
PTPRU-205ENST00000460170 FOXD4L3Q6VB84 417 aaPredicted RBP18.09■□□□□ 0.49
PTPRU-205ENST00000460170 UNC13AQ9UPW8 1703 aa18.09■□□□□ 0.49
PTPRU-205ENST00000460170 SLFN5Q08AF3 891 aa18.08■□□□□ 0.48
PTPRU-205ENST00000460170 CABP1Q9NZU7 370 aa18.08■□□□□ 0.48
PTPRU-205ENST00000460170 ZKSCAN1P17029 563 aaPredicted RBP18.08■□□□□ 0.48
PTPRU-205ENST00000460170 IFIT2P09913 472 aaKnown RBP18.07■□□□□ 0.48
PTPRU-205ENST00000460170 CDK19Q9BWU1 502 aa18.07■□□□□ 0.48
PTPRU-205ENST00000460170 MAPKBP1O60336 1514 aa18.07■□□□□ 0.48
PTPRU-205ENST00000460170 NUCB2P80303 420 aa18.07■□□□□ 0.48
PTPRU-205ENST00000460170 TPM4P67936 248 aa18.07■□□□□ 0.48
PTPRU-205ENST00000460170 TWISTNBQ3B726 338 aaPredicted RBP18.07■□□□□ 0.48
PTPRU-205ENST00000460170 TTC5Q8N0Z6 440 aa18.07■□□□□ 0.48
PTPRU-205ENST00000460170 DDX58O95786 925 aaKnown RBP18.07■□□□□ 0.48
PTPRU-205ENST00000460170 NOB1Q9ULX3 412 aaKnown RBP18.07■□□□□ 0.48
PTPRU-205ENST00000460170 TULP1O00294 542 aaPredicted RBP18.06■□□□□ 0.48
PTPRU-205ENST00000460170 NLRP6P59044 892 aa18.06■□□□□ 0.48
PTPRU-205ENST00000460170 HSP90AB4PQ58FF6 505 aa18.05■□□□□ 0.48
PTPRU-205ENST00000460170 PTPRKQ15262 1439 aa18.05■□□□□ 0.48
PTPRU-205ENST00000460170 CCDC9Q9Y3X0 531 aaKnown RBP18.05■□□□□ 0.48
PTPRU-205ENST00000460170 KIF14Q15058 1648 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 H3BQV1 296 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 IFFO2Q5TF58 517 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 WWC1Q8IX03 1113 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 RAPGEF3O95398 923 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 ATF7IPQ6VMQ6 1270 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 CCDC34Q96HJ3 373 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 FAM184AQ8NB25 1140 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 GCC1Q96CN9 775 aa18.04■□□□□ 0.48
PTPRU-205ENST00000460170 MVPQ14764 893 aaKnown RBP18.03■□□□□ 0.48
PTPRU-205ENST00000460170 SF3A1Q15459 793 aaKnown RBP18.03■□□□□ 0.48
PTPRU-205ENST00000460170 TXNDC2Q86VQ3 553 aa18.03■□□□□ 0.48
PTPRU-205ENST00000460170 CHMP4CQ96CF2 233 aa18.03■□□□□ 0.48
PTPRU-205ENST00000460170 G3BP1Q13283 466 aaKnown RBP eCLIP18.03■□□□□ 0.48
PTPRU-205ENST00000460170 ATAD2Q6PL18 1390 aa18.02■□□□□ 0.48
PTPRU-205ENST00000460170 NSD3Q9BZ95 1437 aa18.02■□□□□ 0.48
PTPRU-205ENST00000460170 UBTFL1P0CB47 393 aaPredicted RBP18.02■□□□□ 0.47
PTPRU-205ENST00000460170 GAS2L2Q8NHY3 880 aa18.02■□□□□ 0.47
PTPRU-205ENST00000460170 RSPH6AQ9H0K4 717 aa18.02■□□□□ 0.47
PTPRU-205ENST00000460170 GNAI3P08754 354 aa18.01■□□□□ 0.47
PTPRU-205ENST00000460170 NUTM2GQ5VZR2 741 aa18.01■□□□□ 0.47
PTPRU-205ENST00000460170 ISY1Q9ULR0 285 aaKnown RBP18.01■□□□□ 0.47
PTPRU-205ENST00000460170 ZNF692Q9BU19 519 aaPredicted RBP18.01■□□□□ 0.47
PTPRU-205ENST00000460170 TOMM22Q9NS69 142 aa18■□□□□ 0.47
PTPRU-205ENST00000460170 C1orf115Q9H7X2 142 aa18■□□□□ 0.47
PTPRU-205ENST00000460170 FRAT2O75474 233 aaPredicted RBP18■□□□□ 0.47
PTPRU-205ENST00000460170 ERC2O15083 957 aa17.99■□□□□ 0.47
PTPRU-205ENST00000460170 THOC2Q8NI27 1593 aaKnown RBP17.99■□□□□ 0.47
PTPRU-205ENST00000460170 CCDC30Q5VVM6 783 aa17.99■□□□□ 0.47
PTPRU-205ENST00000460170 LRRFIP1Q32MZ4 808 aaKnown RBP17.99■□□□□ 0.47
PTPRU-205ENST00000460170 RNF20Q5VTR2 975 aa17.99■□□□□ 0.47
PTPRU-205ENST00000460170 SULT6B1Q6IMI4 303 aa17.99■□□□□ 0.47
PTPRU-205ENST00000460170 ZNF608Q9ULD9 1512 aaPredicted RBP17.98■□□□□ 0.47
PTPRU-205ENST00000460170 MCTP1Q6DN14 999 aa17.98■□□□□ 0.47
PTPRU-205ENST00000460170 RAPGEF4Q8WZA2 1011 aa17.97■□□□□ 0.47
PTPRU-205ENST00000460170 ARID3AQ99856 593 aa17.97■□□□□ 0.47
PTPRU-205ENST00000460170 RTEL1-TNFRSF6BF6WH68 1400 aa17.97■□□□□ 0.47
PTPRU-205ENST00000460170 FCHSD2O94868 740 aa17.97■□□□□ 0.47
PTPRU-205ENST00000460170 UGGT2Q9NYU1 1516 aa17.97■□□□□ 0.47
PTPRU-205ENST00000460170 GPATCH8Q9UKJ3 1502 aaKnown RBP17.97■□□□□ 0.47
PTPRU-205ENST00000460170 SMC3Q9UQE7 1217 aa17.96■□□□□ 0.47
PTPRU-205ENST00000460170 TMPOP42166 694 aaKnown RBP17.96■□□□□ 0.47
PTPRU-205ENST00000460170 ABTB2Q8N961 1025 aa17.95■□□□□ 0.46
PTPRU-205ENST00000460170 ZNF428Q96B54 188 aa17.95■□□□□ 0.46
PTPRU-205ENST00000460170 TRAK2O60296 914 aa17.95■□□□□ 0.46
PTPRU-205ENST00000460170 C20orf194Q5TEA3 1177 aa17.95■□□□□ 0.46
PTPRU-205ENST00000460170 EVA1CP58658 441 aa17.95■□□□□ 0.46
PTPRU-205ENST00000460170 GTF2E1P29083 439 aaPredicted RBP17.95■□□□□ 0.46
PTPRU-205ENST00000460170 SLC4A2P04920 1241 aa17.94■□□□□ 0.46
PTPRU-205ENST00000460170 MRE11P49959 708 aa17.94■□□□□ 0.46
PTPRU-205ENST00000460170 GOLGA6L19H0YKK7 550 aa17.94■□□□□ 0.46
PTPRU-205ENST00000460170 SURF6O75683 361 aaKnown RBP17.94■□□□□ 0.46
PTPRU-205ENST00000460170 RABEP1Q15276 862 aa17.93■□□□□ 0.46
PTPRU-205ENST00000460170 RIC3Q7Z5B4 369 aa17.93■□□□□ 0.46
PTPRU-205ENST00000460170 ADGRF5Q8IZF2 1346 aa17.93■□□□□ 0.46
PTPRU-205ENST00000460170 VPS37CA5D8V6 355 aaPredicted RBP17.93■□□□□ 0.46
PTPRU-205ENST00000460170 BECN2A8MW95 431 aa17.92■□□□□ 0.46
PTPRU-205ENST00000460170 GNAI2P04899 355 aa17.92■□□□□ 0.46
PTPRU-205ENST00000460170 AIMP1Q12904 312 aaKnown RBP17.92■□□□□ 0.46
PTPRU-205ENST00000460170 CPLX2Q6PUV4 134 aaKnown RBP17.92■□□□□ 0.46
PTPRU-205ENST00000460170 CLASRPQ8N2M8 674 aaKnown RBP17.92■□□□□ 0.46
PTPRU-205ENST00000460170 CHD1LQ86WJ1 897 aa17.91■□□□□ 0.46
PTPRU-205ENST00000460170 NLRP2Q9NX02 1062 aa17.91■□□□□ 0.46
PTPRU-205ENST00000460170 RARSP54136 660 aaKnown RBP17.91■□□□□ 0.46
PTPRU-205ENST00000460170 NEK4P51957 841 aa17.91■□□□□ 0.46
PTPRU-205ENST00000460170 NFE2L2Q16236 605 aa17.91■□□□□ 0.46
PTPRU-205ENST00000460170 CNTROBQ8N137 903 aa17.9■□□□□ 0.46
PTPRU-205ENST00000460170 NKTRP30414 1462 aaKnown RBP17.9■□□□□ 0.46
PTPRU-205ENST00000460170 SCAF11Q99590 1463 aaKnown RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms