RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 PRAM1Q96QH2 718 aa33.36■■■□□ 2.93
CBX3-204ENST00000456948 TRAK1Q9UPV9 953 aa33.36■■■□□ 2.93
CBX3-204ENST00000456948 JCADQ9P266 1359 aa33.35■■■□□ 2.93
CBX3-204ENST00000456948 C1orf167Q5SNV9 1468 aa33.35■■■□□ 2.93
CBX3-204ENST00000456948 L3MBTL2Q969R5 705 aa33.34■■■□□ 2.93
CBX3-204ENST00000456948 COL16A1Q07092 1604 aaPredicted RBP33.34■■■□□ 2.93
CBX3-204ENST00000456948 PLEKHH1Q9ULM0 1364 aa33.34■■■□□ 2.93
CBX3-204ENST00000456948 DLC1Q96QB1 1528 aa33.33■■■□□ 2.93
CBX3-204ENST00000456948 CDC42BPGQ6DT37 1551 aa33.32■■■□□ 2.92
CBX3-204ENST00000456948 AHDC1Q5TGY3 1603 aaPredicted RBP33.31■■■□□ 2.92
CBX3-204ENST00000456948 ADGRB1O14514 1584 aa33.31■■■□□ 2.92
CBX3-204ENST00000456948 SAFB2Q14151 953 aaKnown RBP eCLIP33.3■■■□□ 2.92
CBX3-204ENST00000456948 ESCO1Q5FWF5 840 aa33.29■■■□□ 2.92
CBX3-204ENST00000456948 LRRC59Q96AG4 307 aaKnown RBP33.27■■■□□ 2.92
CBX3-204ENST00000456948 RGS17Q9UGC6 210 aaPredicted RBP33.27■■■□□ 2.92
CBX3-204ENST00000456948 KIAA1210Q9ULL0 1709 aa33.26■■■□□ 2.92
CBX3-204ENST00000456948 ORAI2Q96SN7 254 aa33.26■■■□□ 2.91
CBX3-204ENST00000456948 NUTM2FA1L443 756 aa33.22■■■□□ 2.91
CBX3-204ENST00000456948 DDX17Q92841 729 aaKnown RBP33.22■■■□□ 2.91
CBX3-204ENST00000456948 SPATA31A6Q5VVP1 1343 aa33.21■■■□□ 2.91
CBX3-204ENST00000456948 PCGF6Q9BYE7 350 aa33.2■■■□□ 2.91
CBX3-204ENST00000456948 NPHP3Q7Z494 1330 aa33.2■■■□□ 2.91
CBX3-204ENST00000456948 NHSL1Q5SYE7 1610 aa33.2■■■□□ 2.9
CBX3-204ENST00000456948 MEX3CQ5U5Q3 659 aaKnown RBP33.19■■■□□ 2.9
CBX3-204ENST00000456948 TONSLQ96HA7 1378 aa33.19■■■□□ 2.9
CBX3-204ENST00000456948 EIF3AQ14152 1382 aaKnown RBP33.18■■■□□ 2.9
CBX3-204ENST00000456948 NBPF1Q3BBV0 1214 aa33.17■■■□□ 2.9
CBX3-204ENST00000456948 MINK1Q8N4C8 1332 aaPredicted RBP33.16■■■□□ 2.9
CBX3-204ENST00000456948 SHPRHQ149N8 1683 aa33.16■■■□□ 2.9
CBX3-204ENST00000456948 FMN2Q9NZ56 1722 aa33.14■■■□□ 2.9
CBX3-204ENST00000456948 NUTM2BA6NNL0 878 aaPredicted RBP33.14■■■□□ 2.9
CBX3-204ENST00000456948 NUTM2EB1AL46 878 aaPredicted RBP33.14■■■□□ 2.9
CBX3-204ENST00000456948 NUTM2AQ8IVF1 878 aaPredicted RBP33.14■■■□□ 2.9
CBX3-204ENST00000456948 SOS2Q07890 1332 aaPredicted RBP33.13■■■□□ 2.89
CBX3-204ENST00000456948 HIRIP3Q9BW71 556 aaPredicted RBP33.13■■■□□ 2.89
CBX3-204ENST00000456948 FOXO3O43524 673 aa33.12■■■□□ 2.89
CBX3-204ENST00000456948 POTEAQ6S8J7 498 aa33.12■■■□□ 2.89
CBX3-204ENST00000456948 LRP6O75581 1613 aa33.11■■■□□ 2.89
CBX3-204ENST00000456948 WASLO00401 505 aaPredicted RBP33.1■■■□□ 2.89
CBX3-204ENST00000456948 PHF8Q9UPP1 1060 aa33.09■■■□□ 2.89
CBX3-204ENST00000456948 ANKARQ7Z5J8 1434 aa33.09■■■□□ 2.89
CBX3-204ENST00000456948 ADGRB2O60241 1585 aa33.09■■■□□ 2.89
CBX3-204ENST00000456948 ARHGEF28Q8N1W1 1705 aaKnown RBP33.08■■■□□ 2.89
CBX3-204ENST00000456948 ROCK2O75116 1388 aaKnown RBP33.07■■■□□ 2.88
CBX3-204ENST00000456948 KIF1AQ12756 1690 aa33.05■■■□□ 2.88
CBX3-204ENST00000456948 PSME1Q06323 249 aa33.05■■■□□ 2.88
CBX3-204ENST00000456948 CENPJQ9HC77 1338 aaPredicted RBP33.03■■■□□ 2.88
CBX3-204ENST00000456948 CLSPNQ9HAW4 1339 aa33.02■■■□□ 2.88
CBX3-204ENST00000456948 PNPLA6Q8IY17 1366 aa33.01■■■□□ 2.88
CBX3-204ENST00000456948 KRT28Q7Z3Y7 464 aa33■■■□□ 2.87
CBX3-204ENST00000456948 TRPM1Q7Z4N2 1603 aa32.99■■■□□ 2.87
CBX3-204ENST00000456948 XPCQ01831 940 aaPredicted RBP32.99■■■□□ 2.87
CBX3-204ENST00000456948 CDK19Q9BWU1 502 aa32.98■■■□□ 2.87
CBX3-204ENST00000456948 RGPD8O14715 1765 aaPredicted RBP32.98■■■□□ 2.87
CBX3-204ENST00000456948 TULP4Q9NRJ4 1543 aa32.97■■■□□ 2.87
CBX3-204ENST00000456948 ZNF772Q68DY9 489 aaPredicted RBP32.97■■■□□ 2.87
CBX3-204ENST00000456948 NBPF8Q3BBV2 869 aa32.96■■■□□ 2.87
CBX3-204ENST00000456948 PMFBP1Q8TBY8 1022 aa32.96■■■□□ 2.87
CBX3-204ENST00000456948 PXDNQ92626 1479 aa32.95■■■□□ 2.87
CBX3-204ENST00000456948 NUDT16Q96DE0 195 aaKnown RBP32.94■■■□□ 2.86
CBX3-204ENST00000456948 NGDNQ8NEJ9 315 aaKnown RBP32.93■■■□□ 2.86
CBX3-204ENST00000456948 CARD11Q9BXL7 1154 aa32.93■■■□□ 2.86
CBX3-204ENST00000456948 GPRASP1Q5JY77 1395 aa32.93■■■□□ 2.86
CBX3-204ENST00000456948 TIMELESSQ9UNS1 1208 aa32.92■■■□□ 2.86
CBX3-204ENST00000456948 SRPK2P78362 688 aaKnown RBP32.91■■■□□ 2.86
CBX3-204ENST00000456948 C8orf37Q96NL8 207 aa32.91■■■□□ 2.86
CBX3-204ENST00000456948 CCDC61Q9Y6R9 512 aa32.9■■■□□ 2.86
CBX3-204ENST00000456948 SPATA31A3Q5VYP0 1347 aa32.9■■■□□ 2.86
CBX3-204ENST00000456948 PRR36Q9H6K5 1346 aa32.9■■■□□ 2.86
CBX3-204ENST00000456948 ADAMTS2O95450 1211 aa32.89■■■□□ 2.86
CBX3-204ENST00000456948 USP32Q8NFA0 1604 aa32.88■■■□□ 2.85
CBX3-204ENST00000456948 AFF2P51816 1311 aa32.88■■■□□ 2.85
CBX3-204ENST00000456948 SBNO1A3KN83 1393 aa32.87■■■□□ 2.85
CBX3-204ENST00000456948 CCER1Q8TC90 406 aaPredicted RBP32.87■■■□□ 2.85
CBX3-204ENST00000456948 EVC2Q86UK5 1308 aa32.86■■■□□ 2.85
CBX3-204ENST00000456948 LMOD2Q6P5Q4 547 aa32.86■■■□□ 2.85
CBX3-204ENST00000456948 ITSN1Q15811 1721 aa32.85■■■□□ 2.85
CBX3-204ENST00000456948 QRICH2Q9H0J4 1663 aa32.83■■■□□ 2.85
CBX3-204ENST00000456948 RALGAPBQ86X10 1494 aa32.83■■■□□ 2.85
CBX3-204ENST00000456948 NGLY1Q96IV0 654 aa32.83■■■□□ 2.85
CBX3-204ENST00000456948 ARHGEF10O15013 1369 aa32.83■■■□□ 2.85
CBX3-204ENST00000456948 COL22A1Q8NFW1 1626 aaPredicted RBP32.82■■■□□ 2.84
CBX3-204ENST00000456948 HAP1P54257 671 aaPredicted RBP32.82■■■□□ 2.84
CBX3-204ENST00000456948 TNS3Q68CZ2 1445 aa32.82■■■□□ 2.84
CBX3-204ENST00000456948 ATP7BP35670 1465 aa32.81■■■□□ 2.84
CBX3-204ENST00000456948 RXRBP28702 533 aa32.8■■■□□ 2.84
CBX3-204ENST00000456948 CABP2Q9NPB3 220 aa32.79■■■□□ 2.84
CBX3-204ENST00000456948 PLEKHG3A1L390 1219 aa32.78■■■□□ 2.84
CBX3-204ENST00000456948 PAK3O75914 559 aaPredicted RBP32.77■■■□□ 2.84
CBX3-204ENST00000456948 SLC24A1O60721 1099 aa32.76■■■□□ 2.83
CBX3-204ENST00000456948 QTRT2Q9H974 415 aaKnown RBP32.75■■■□□ 2.83
CBX3-204ENST00000456948 ACEP12821 1306 aa32.74■■■□□ 2.83
CBX3-204ENST00000456948 PPIP5K1Q6PFW1 1433 aa32.71■■■□□ 2.83
CBX3-204ENST00000456948 POLR3AO14802 1390 aaPredicted RBP32.7■■■□□ 2.83
CBX3-204ENST00000456948 SBNO2Q9Y2G9 1366 aa32.7■■■□□ 2.83
CBX3-204ENST00000456948 USP21Q9UK80 565 aa32.69■■■□□ 2.82
CBX3-204ENST00000456948 PLEKHG5O94827 1062 aa32.68■■■□□ 2.82
CBX3-204ENST00000456948 FNBP4Q8N3X1 1017 aaPredicted RBP32.67■■■□□ 2.82
CBX3-204ENST00000456948 CABP1Q9NZU7 370 aa32.67■■■□□ 2.82
CBX3-204ENST00000456948 TOPAZ1Q8N9V7 1692 aa32.66■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms