RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 DCAF11Q8TEB1 546 aa31.01■■■□□ 2.55
HMGB3-205ENST00000455596 STAC3Q96MF2 364 aa31■■■□□ 2.55
HMGB3-205ENST00000455596 KDM2AQ9Y2K7 1162 aa31■■■□□ 2.55
HMGB3-205ENST00000455596 PLEKHH1Q9ULM0 1364 aa30.99■■■□□ 2.55
HMGB3-205ENST00000455596 SIRT1Q96EB6 747 aa30.98■■■□□ 2.55
HMGB3-205ENST00000455596 FMN2Q9NZ56 1722 aa30.98■■■□□ 2.55
HMGB3-205ENST00000455596 ORAI2Q96SN7 254 aa30.97■■■□□ 2.55
HMGB3-205ENST00000455596 RGS17Q9UGC6 210 aaPredicted RBP30.97■■■□□ 2.55
HMGB3-205ENST00000455596 DDX17Q92841 729 aaKnown RBP30.96■■■□□ 2.55
HMGB3-205ENST00000455596 LRP6O75581 1613 aa30.95■■■□□ 2.55
HMGB3-205ENST00000455596 LRRC59Q96AG4 307 aaKnown RBP30.95■■■□□ 2.55
HMGB3-205ENST00000455596 ADGRB1O14514 1584 aa30.95■■■□□ 2.54
HMGB3-205ENST00000455596 DLC1Q96QB1 1528 aa30.94■■■□□ 2.54
HMGB3-205ENST00000455596 RGPD8O14715 1765 aaPredicted RBP30.91■■■□□ 2.54
HMGB3-205ENST00000455596 ESCO1Q5FWF5 840 aa30.89■■■□□ 2.54
HMGB3-205ENST00000455596 MEX3CQ5U5Q3 659 aaKnown RBP30.89■■■□□ 2.54
HMGB3-205ENST00000455596 PRAM1Q96QH2 718 aa30.87■■■□□ 2.53
HMGB3-205ENST00000455596 KIF1AQ12756 1690 aa30.87■■■□□ 2.53
HMGB3-205ENST00000455596 NUTM2FA1L443 756 aa30.86■■■□□ 2.53
HMGB3-205ENST00000455596 SOS2Q07890 1332 aaPredicted RBP30.86■■■□□ 2.53
HMGB3-205ENST00000455596 PNPLA6Q8IY17 1366 aa30.86■■■□□ 2.53
HMGB3-205ENST00000455596 KIAA1210Q9ULL0 1709 aa30.86■■■□□ 2.53
HMGB3-205ENST00000455596 NUTM2BA6NNL0 878 aaPredicted RBP30.85■■■□□ 2.53
HMGB3-205ENST00000455596 NUTM2EB1AL46 878 aaPredicted RBP30.85■■■□□ 2.53
HMGB3-205ENST00000455596 NUTM2AQ8IVF1 878 aaPredicted RBP30.85■■■□□ 2.53
HMGB3-205ENST00000455596 POGKQ9P215 609 aa30.84■■■□□ 2.53
HMGB3-205ENST00000455596 SAFB2Q14151 953 aaKnown RBP eCLIP30.83■■■□□ 2.53
HMGB3-205ENST00000455596 TRAK1Q9UPV9 953 aa30.83■■■□□ 2.53
HMGB3-205ENST00000455596 ADGRB2O60241 1585 aa30.83■■■□□ 2.53
HMGB3-205ENST00000455596 ARHGEF28Q8N1W1 1705 aaKnown RBP30.82■■■□□ 2.52
HMGB3-205ENST00000455596 NPHP3Q7Z494 1330 aa30.82■■■□□ 2.52
HMGB3-205ENST00000455596 POTEAQ6S8J7 498 aa30.82■■■□□ 2.52
HMGB3-205ENST00000455596 PXDNQ92626 1479 aa30.78■■■□□ 2.52
HMGB3-205ENST00000455596 COL22A1Q8NFW1 1626 aaPredicted RBP30.78■■■□□ 2.52
HMGB3-205ENST00000455596 FOXO3O43524 673 aa30.77■■■□□ 2.52
HMGB3-205ENST00000455596 USP32Q8NFA0 1604 aa30.74■■■□□ 2.51
HMGB3-205ENST00000455596 ZNF772Q68DY9 489 aaPredicted RBP30.74■■■□□ 2.51
HMGB3-205ENST00000455596 XPCQ01831 940 aaPredicted RBP30.71■■■□□ 2.51
HMGB3-205ENST00000455596 ANKARQ7Z5J8 1434 aa30.7■■■□□ 2.5
HMGB3-205ENST00000455596 MINK1Q8N4C8 1332 aaPredicted RBP30.7■■■□□ 2.5
HMGB3-205ENST00000455596 PHF8Q9UPP1 1060 aa30.69■■■□□ 2.5
HMGB3-205ENST00000455596 MARF1Q9Y4F3 1742 aaKnown RBP30.69■■■□□ 2.5
HMGB3-205ENST00000455596 HIRIP3Q9BW71 556 aaPredicted RBP30.68■■■□□ 2.5
HMGB3-205ENST00000455596 SIN3AQ96ST3 1273 aa30.67■■■□□ 2.5
HMGB3-205ENST00000455596 EIF3AQ14152 1382 aaKnown RBP30.66■■■□□ 2.5
HMGB3-205ENST00000455596 C8orf37Q96NL8 207 aa30.66■■■□□ 2.5
HMGB3-205ENST00000455596 AFF2P51816 1311 aa30.66■■■□□ 2.5
HMGB3-205ENST00000455596 TULP4Q9NRJ4 1543 aa30.65■■■□□ 2.5
HMGB3-205ENST00000455596 TRIM26Q12899 539 aaPredicted RBP30.65■■■□□ 2.5
HMGB3-205ENST00000455596 ITSN1Q15811 1721 aa30.64■■■□□ 2.5
HMGB3-205ENST00000455596 ADAMTS2O95450 1211 aa30.63■■■□□ 2.49
HMGB3-205ENST00000455596 KRT28Q7Z3Y7 464 aa30.63■■■□□ 2.49
HMGB3-205ENST00000455596 L3MBTL2Q969R5 705 aa30.63■■■□□ 2.49
HMGB3-205ENST00000455596 WASLO00401 505 aaPredicted RBP30.62■■■□□ 2.49
HMGB3-205ENST00000455596 NEUROD1Q13562 356 aa30.62■■■□□ 2.49
HMGB3-205ENST00000455596 NBPF1Q3BBV0 1214 aa30.61■■■□□ 2.49
HMGB3-205ENST00000455596 SPATA31A3Q5VYP0 1347 aa30.6■■■□□ 2.49
HMGB3-205ENST00000455596 TRPM1Q7Z4N2 1603 aa30.59■■■□□ 2.49
HMGB3-205ENST00000455596 PSME1Q06323 249 aa30.59■■■□□ 2.49
HMGB3-205ENST00000455596 NGLY1Q96IV0 654 aa30.59■■■□□ 2.49
HMGB3-205ENST00000455596 PMFBP1Q8TBY8 1022 aa30.57■■■□□ 2.48
HMGB3-205ENST00000455596 TNS3Q68CZ2 1445 aa30.56■■■□□ 2.48
HMGB3-205ENST00000455596 PRR36Q9H6K5 1346 aa30.56■■■□□ 2.48
HMGB3-205ENST00000455596 RXRBP28702 533 aa30.55■■■□□ 2.48
HMGB3-205ENST00000455596 TRPM3Q9HCF6 1732 aaPredicted RBP30.55■■■□□ 2.48
HMGB3-205ENST00000455596 SBNO1A3KN83 1393 aa30.54■■■□□ 2.48
HMGB3-205ENST00000455596 QRICH2Q9H0J4 1663 aa30.53■■■□□ 2.48
HMGB3-205ENST00000455596 ABCA3Q99758 1704 aa30.52■■■□□ 2.48
HMGB3-205ENST00000455596 ATP7BP35670 1465 aa30.5■■■□□ 2.47
HMGB3-205ENST00000455596 TOPAZ1Q8N9V7 1692 aa30.5■■■□□ 2.47
HMGB3-205ENST00000455596 QTRT2Q9H974 415 aaKnown RBP30.5■■■□□ 2.47
HMGB3-205ENST00000455596 CDK12Q9NYV4 1490 aaPredicted RBP30.5■■■□□ 2.47
HMGB3-205ENST00000455596 GPRASP1Q5JY77 1395 aa30.49■■■□□ 2.47
HMGB3-205ENST00000455596 ALS2Q96Q42 1657 aa30.49■■■□□ 2.47
HMGB3-205ENST00000455596 USP21Q9UK80 565 aa30.48■■■□□ 2.47
HMGB3-205ENST00000455596 ARHGEF10O15013 1369 aa30.48■■■□□ 2.47
HMGB3-205ENST00000455596 FNBP4Q8N3X1 1017 aaPredicted RBP30.47■■■□□ 2.47
HMGB3-205ENST00000455596 NUDT16Q96DE0 195 aaKnown RBP30.47■■■□□ 2.47
HMGB3-205ENST00000455596 CDK19Q9BWU1 502 aa30.47■■■□□ 2.47
HMGB3-205ENST00000455596 CENPJQ9HC77 1338 aaPredicted RBP30.47■■■□□ 2.47
HMGB3-205ENST00000455596 LMOD2Q6P5Q4 547 aa30.46■■■□□ 2.47
HMGB3-205ENST00000455596 NGDNQ8NEJ9 315 aaKnown RBP30.45■■■□□ 2.47
HMGB3-205ENST00000455596 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.44■■■□□ 2.46
HMGB3-205ENST00000455596 RBM6P78332 1123 aaKnown RBP30.44■■■□□ 2.46
HMGB3-205ENST00000455596 HAP1P54257 671 aaPredicted RBP30.43■■■□□ 2.46
HMGB3-205ENST00000455596 ROCK2O75116 1388 aaKnown RBP30.42■■■□□ 2.46
HMGB3-205ENST00000455596 TRPC5Q9UL62 973 aaPredicted RBP30.42■■■□□ 2.46
HMGB3-205ENST00000455596 CABLES1Q8TDN4 633 aa30.39■■■□□ 2.46
HMGB3-205ENST00000455596 PLCH1Q4KWH8 1693 aa30.39■■■□□ 2.45
HMGB3-205ENST00000455596 TONSLQ96HA7 1378 aa30.39■■■□□ 2.45
HMGB3-205ENST00000455596 ATRNO75882 1429 aa30.39■■■□□ 2.45
HMGB3-205ENST00000455596 BCL9LQ86UU0 1499 aa30.38■■■□□ 2.45
HMGB3-205ENST00000455596 PLEKHG5O94827 1062 aa30.38■■■□□ 2.45
HMGB3-205ENST00000455596 CCDC61Q9Y6R9 512 aa30.38■■■□□ 2.45
HMGB3-205ENST00000455596 CRYBG1Q9Y4K1 1723 aa30.37■■■□□ 2.45
HMGB3-205ENST00000455596 RGS12O14924 1447 aa30.37■■■□□ 2.45
HMGB3-205ENST00000455596 NWD2Q9ULI1 1742 aa30.36■■■□□ 2.45
HMGB3-205ENST00000455596 SLIT2O94813 1529 aa30.36■■■□□ 2.45
HMGB3-205ENST00000455596 SRPK2P78362 688 aaKnown RBP30.35■■■□□ 2.45
HMGB3-205ENST00000455596 NBPF8Q3BBV2 869 aa30.35■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms