RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 POTEAQ6S8J7 498 aa24.16■■□□□ 1.46
NCKIPSD-208ENST00000454134 YTHDC2Q9H6S0 1430 aaKnown RBP24.16■■□□□ 1.46
NCKIPSD-208ENST00000454134 KNDC1Q76NI1 1749 aa24.15■■□□□ 1.46
NCKIPSD-208ENST00000454134 NUTM2BA6NNL0 878 aaPredicted RBP24.13■■□□□ 1.45
NCKIPSD-208ENST00000454134 NUTM2EB1AL46 878 aaPredicted RBP24.13■■□□□ 1.45
NCKIPSD-208ENST00000454134 MEX3CQ5U5Q3 659 aaKnown RBP24.13■■□□□ 1.45
NCKIPSD-208ENST00000454134 NUTM2AQ8IVF1 878 aaPredicted RBP24.13■■□□□ 1.45
NCKIPSD-208ENST00000454134 CDC42BPGQ6DT37 1551 aa24.12■■□□□ 1.45
NCKIPSD-208ENST00000454134 LRRC59Q96AG4 307 aaKnown RBP24.12■■□□□ 1.45
NCKIPSD-208ENST00000454134 KDM2AQ9Y2K7 1162 aa24.12■■□□□ 1.45
NCKIPSD-208ENST00000454134 LAMC1P11047 1609 aa24.11■■□□□ 1.45
NCKIPSD-208ENST00000454134 NUTM2FA1L443 756 aa24.1■■□□□ 1.45
NCKIPSD-208ENST00000454134 DCAF11Q8TEB1 546 aa24.1■■□□□ 1.45
NCKIPSD-208ENST00000454134 DHX57Q6P158 1386 aaKnown RBP24.09■■□□□ 1.45
NCKIPSD-208ENST00000454134 ESCO1Q5FWF5 840 aa24.08■■□□□ 1.45
NCKIPSD-208ENST00000454134 PNPLA6Q8IY17 1366 aa24.07■■□□□ 1.44
NCKIPSD-208ENST00000454134 SIRT1Q96EB6 747 aa24.05■■□□□ 1.44
NCKIPSD-208ENST00000454134 SOS2Q07890 1332 aaPredicted RBP24.05■■□□□ 1.44
NCKIPSD-208ENST00000454134 SAFB2Q14151 953 aaKnown RBP eCLIP24.04■■□□□ 1.44
NCKIPSD-208ENST00000454134 PRAM1Q96QH2 718 aa24.04■■□□□ 1.44
NCKIPSD-208ENST00000454134 ADGRB1O14514 1584 aa24.02■■□□□ 1.44
NCKIPSD-208ENST00000454134 FMN2Q9NZ56 1722 aa24.01■■□□□ 1.43
NCKIPSD-208ENST00000454134 FOXO3O43524 673 aa24.01■■□□□ 1.43
NCKIPSD-208ENST00000454134 XPCQ01831 940 aaPredicted RBP24.01■■□□□ 1.43
NCKIPSD-208ENST00000454134 TRAK1Q9UPV9 953 aa24■■□□□ 1.43
NCKIPSD-208ENST00000454134 POGKQ9P215 609 aa23.99■■□□□ 1.43
NCKIPSD-208ENST00000454134 NPHP3Q7Z494 1330 aa23.99■■□□□ 1.43
NCKIPSD-208ENST00000454134 ZNF772Q68DY9 489 aaPredicted RBP23.98■■□□□ 1.43
NCKIPSD-208ENST00000454134 DLC1Q96QB1 1528 aa23.98■■□□□ 1.43
NCKIPSD-208ENST00000454134 PXDNQ92626 1479 aa23.97■■□□□ 1.43
NCKIPSD-208ENST00000454134 STAC3Q96MF2 364 aa23.97■■□□□ 1.43
NCKIPSD-208ENST00000454134 C8orf37Q96NL8 207 aa23.97■■□□□ 1.43
NCKIPSD-208ENST00000454134 AFF2P51816 1311 aa23.96■■□□□ 1.43
NCKIPSD-208ENST00000454134 ADAMTS2O95450 1211 aa23.96■■□□□ 1.43
NCKIPSD-208ENST00000454134 RGPD8O14715 1765 aaPredicted RBP23.93■■□□□ 1.42
NCKIPSD-208ENST00000454134 HIRIP3Q9BW71 556 aaPredicted RBP23.92■■□□□ 1.42
NCKIPSD-208ENST00000454134 MINK1Q8N4C8 1332 aaPredicted RBP23.91■■□□□ 1.42
NCKIPSD-208ENST00000454134 KIF1AQ12756 1690 aa23.9■■□□□ 1.42
NCKIPSD-208ENST00000454134 PHF8Q9UPP1 1060 aa23.9■■□□□ 1.42
NCKIPSD-208ENST00000454134 COL22A1Q8NFW1 1626 aaPredicted RBP23.9■■□□□ 1.42
NCKIPSD-208ENST00000454134 NGLY1Q96IV0 654 aa23.89■■□□□ 1.41
NCKIPSD-208ENST00000454134 ADGRB2O60241 1585 aa23.87■■□□□ 1.41
NCKIPSD-208ENST00000454134 RXRBP28702 533 aa23.87■■□□□ 1.41
NCKIPSD-208ENST00000454134 KRT28Q7Z3Y7 464 aa23.87■■□□□ 1.41
NCKIPSD-208ENST00000454134 USP32Q8NFA0 1604 aa23.86■■□□□ 1.41
NCKIPSD-208ENST00000454134 SPATA31A3Q5VYP0 1347 aa23.84■■□□□ 1.41
NCKIPSD-208ENST00000454134 PMFBP1Q8TBY8 1022 aa23.84■■□□□ 1.41
NCKIPSD-208ENST00000454134 ARHGEF28Q8N1W1 1705 aaKnown RBP23.84■■□□□ 1.41
NCKIPSD-208ENST00000454134 ANKARQ7Z5J8 1434 aa23.84■■□□□ 1.41
NCKIPSD-208ENST00000454134 SIN3AQ96ST3 1273 aa23.83■■□□□ 1.41
NCKIPSD-208ENST00000454134 QTRT2Q9H974 415 aaKnown RBP23.83■■□□□ 1.41
NCKIPSD-208ENST00000454134 NBPF1Q3BBV0 1214 aa23.82■■□□□ 1.4
NCKIPSD-208ENST00000454134 PRR36Q9H6K5 1346 aa23.82■■□□□ 1.4
NCKIPSD-208ENST00000454134 WASLO00401 505 aaPredicted RBP23.81■■□□□ 1.4
NCKIPSD-208ENST00000454134 PSME1Q06323 249 aa23.8■■□□□ 1.4
NCKIPSD-208ENST00000454134 USP21Q9UK80 565 aa23.8■■□□□ 1.4
NCKIPSD-208ENST00000454134 KIAA1210Q9ULL0 1709 aa23.8■■□□□ 1.4
NCKIPSD-208ENST00000454134 PLEKHG5O94827 1062 aa23.79■■□□□ 1.4
NCKIPSD-208ENST00000454134 L3MBTL2Q969R5 705 aa23.79■■□□□ 1.4
NCKIPSD-208ENST00000454134 TULP4Q9NRJ4 1543 aa23.79■■□□□ 1.4
NCKIPSD-208ENST00000454134 TNS3Q68CZ2 1445 aa23.78■■□□□ 1.4
NCKIPSD-208ENST00000454134 NEUROD1Q13562 356 aa23.78■■□□□ 1.4
NCKIPSD-208ENST00000454134 FNBP4Q8N3X1 1017 aaPredicted RBP23.78■■□□□ 1.4
NCKIPSD-208ENST00000454134 EIF3AQ14152 1382 aaKnown RBP23.78■■□□□ 1.4
NCKIPSD-208ENST00000454134 RBM6P78332 1123 aaKnown RBP23.77■■□□□ 1.4
NCKIPSD-208ENST00000454134 LMOD2Q6P5Q4 547 aa23.77■■□□□ 1.4
NCKIPSD-208ENST00000454134 MARF1Q9Y4F3 1742 aaKnown RBP23.76■■□□□ 1.39
NCKIPSD-208ENST00000454134 CDK12Q9NYV4 1490 aaPredicted RBP23.75■■□□□ 1.39
NCKIPSD-208ENST00000454134 CABLES1Q8TDN4 633 aa23.75■■□□□ 1.39
NCKIPSD-208ENST00000454134 SBNO1A3KN83 1393 aa23.75■■□□□ 1.39
NCKIPSD-208ENST00000454134 TRPC5Q9UL62 973 aaPredicted RBP23.73■■□□□ 1.39
NCKIPSD-208ENST00000454134 RGS12O14924 1447 aa23.73■■□□□ 1.39
NCKIPSD-208ENST00000454134 HAP1P54257 671 aaPredicted RBP23.72■■□□□ 1.39
NCKIPSD-208ENST00000454134 CDK19Q9BWU1 502 aa23.72■■□□□ 1.39
NCKIPSD-208ENST00000454134 BCL9LQ86UU0 1499 aa23.71■■□□□ 1.39
NCKIPSD-208ENST00000454134 NUDT16Q96DE0 195 aaKnown RBP23.71■■□□□ 1.39
NCKIPSD-208ENST00000454134 ATP7BP35670 1465 aa23.7■■□□□ 1.38
NCKIPSD-208ENST00000454134 ATRNO75882 1429 aa23.7■■□□□ 1.38
NCKIPSD-208ENST00000454134 ARHGEF10O15013 1369 aa23.7■■□□□ 1.38
NCKIPSD-208ENST00000454134 GPRASP1Q5JY77 1395 aa23.7■■□□□ 1.38
NCKIPSD-208ENST00000454134 NGDNQ8NEJ9 315 aaKnown RBP23.7■■□□□ 1.38
NCKIPSD-208ENST00000454134 TRPM3Q9HCF6 1732 aaPredicted RBP23.7■■□□□ 1.38
NCKIPSD-208ENST00000454134 UPF1Q92900 1129 aaKnown RBP eCLIP23.67■■□□□ 1.38
NCKIPSD-208ENST00000454134 ITSN1Q15811 1721 aa23.66■■□□□ 1.38
NCKIPSD-208ENST00000454134 ABCA3Q99758 1704 aa23.66■■□□□ 1.38
NCKIPSD-208ENST00000454134 CENPJQ9HC77 1338 aaPredicted RBP23.65■■□□□ 1.38
NCKIPSD-208ENST00000454134 PAK3O75914 559 aaPredicted RBP23.65■■□□□ 1.38
NCKIPSD-208ENST00000454134 SLIT2O94813 1529 aa23.64■■□□□ 1.38
NCKIPSD-208ENST00000454134 ALS2Q96Q42 1657 aa23.64■■□□□ 1.38
NCKIPSD-208ENST00000454134 TRPM1Q7Z4N2 1603 aa23.64■■□□□ 1.38
NCKIPSD-208ENST00000454134 TRIM26Q12899 539 aaPredicted RBP23.64■■□□□ 1.37
NCKIPSD-208ENST00000454134 UNC5CLQ8IV45 518 aa23.63■■□□□ 1.37
NCKIPSD-208ENST00000454134 CCDC61Q9Y6R9 512 aa23.62■■□□□ 1.37
NCKIPSD-208ENST00000454134 TOPAZ1Q8N9V7 1692 aa23.61■■□□□ 1.37
NCKIPSD-208ENST00000454134 QRICH2Q9H0J4 1663 aa23.61■■□□□ 1.37
NCKIPSD-208ENST00000454134 GJD4Q96KN9 370 aaPredicted RBP23.61■■□□□ 1.37
NCKIPSD-208ENST00000454134 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.61■■□□□ 1.37
NCKIPSD-208ENST00000454134 SRPK2P78362 688 aaKnown RBP23.6■■□□□ 1.37
NCKIPSD-208ENST00000454134 ACEP12821 1306 aa23.59■■□□□ 1.37
NCKIPSD-208ENST00000454134 FAM83GA6ND36 823 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms