RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CANXP27824 592 aaKnown RBP14.15□□□□□ -0.14
LIMS1-207ENST00000422797 CCDC27Q2M243 656 aa14.15□□□□□ -0.14
LIMS1-207ENST00000422797 WDR63Q8IWG1 891 aa14.15□□□□□ -0.14
LIMS1-207ENST00000422797 UPF2Q9HAU5 1272 aaKnown RBP14.15□□□□□ -0.14
LIMS1-207ENST00000422797 IQSEC2Q5JU85 1478 aa14.15□□□□□ -0.14
LIMS1-207ENST00000422797 MROH1Q8NDA8 1641 aa14.15□□□□□ -0.14
LIMS1-207ENST00000422797 ADGRB3O60242 1522 aa14.15□□□□□ -0.14
LIMS1-207ENST00000422797 CT47B1P0C2W7 299 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-207ENST00000422797 ERCC6L2Q5T890 1561 aa14.14□□□□□ -0.15
LIMS1-207ENST00000422797 RGS3P49796 1198 aa14.14□□□□□ -0.15
LIMS1-207ENST00000422797 RUNDC1Q96C34 613 aa14.14□□□□□ -0.15
LIMS1-207ENST00000422797 HOXD11P31277 338 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-207ENST00000422797 CCDC146Q8IYE0 955 aa14.13□□□□□ -0.15
LIMS1-207ENST00000422797 SHPRHQ149N8 1683 aa14.13□□□□□ -0.15
LIMS1-207ENST00000422797 ZC3H13Q5T200 1668 aaKnown RBP14.13□□□□□ -0.15
LIMS1-207ENST00000422797 WWC1Q8IX03 1113 aa14.12□□□□□ -0.15
LIMS1-207ENST00000422797 CFAP53Q96M91 514 aa14.12□□□□□ -0.15
LIMS1-207ENST00000422797 IL27Q8NEV9 243 aa14.11□□□□□ -0.15
LIMS1-207ENST00000422797 RPGRIP1LQ68CZ1 1315 aa14.11□□□□□ -0.15
LIMS1-207ENST00000422797 BCAR3O75815 825 aa14.1□□□□□ -0.15
LIMS1-207ENST00000422797 FRAT1Q92837 279 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-207ENST00000422797 SKAP1Q86WV1 359 aa14.1□□□□□ -0.15
LIMS1-207ENST00000422797 MYH16Q9H6N6 1097 aa14.1□□□□□ -0.15
LIMS1-207ENST00000422797 NSD3Q9BZ95 1437 aa14.09□□□□□ -0.15
LIMS1-207ENST00000422797 MORC1Q86VD1 984 aa14.09□□□□□ -0.15
LIMS1-207ENST00000422797 CARD14Q9BXL6 1004 aa14.09□□□□□ -0.15
LIMS1-207ENST00000422797 RWDD1Q9H446 243 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-207ENST00000422797 SPINK5Q9NQ38 1064 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-207ENST00000422797 ZNF518AQ6AHZ1 1483 aa14.09□□□□□ -0.15
LIMS1-207ENST00000422797 PPRC1Q5VV67 1664 aaKnown RBP14.08□□□□□ -0.15
LIMS1-207ENST00000422797 RARSP54136 660 aaKnown RBP14.08□□□□□ -0.16
LIMS1-207ENST00000422797 CFAP70Q5T0N1 1121 aa14.08□□□□□ -0.16
LIMS1-207ENST00000422797 L1TD1Q5T7N2 865 aaKnown RBP14.08□□□□□ -0.16
LIMS1-207ENST00000422797 CFAP74Q9C0B2 1584 aa14.08□□□□□ -0.16
LIMS1-207ENST00000422797 QRICH2Q9H0J4 1663 aa14.08□□□□□ -0.16
LIMS1-207ENST00000422797 MROH2AA6NES4 1674 aa14.07□□□□□ -0.16
LIMS1-207ENST00000422797 KIF3BO15066 747 aa14.07□□□□□ -0.16
LIMS1-207ENST00000422797 USP19O94966 1318 aa14.07□□□□□ -0.16
LIMS1-207ENST00000422797 AFAP1Q8N556 730 aa14.07□□□□□ -0.16
LIMS1-207ENST00000422797 NLRP1Q9C000 1473 aa14.07□□□□□ -0.16
LIMS1-207ENST00000422797 ADGRB2O60241 1585 aa14.06□□□□□ -0.16
LIMS1-207ENST00000422797 ADGRF5Q8IZF2 1346 aa14.06□□□□□ -0.16
LIMS1-207ENST00000422797 IGHDP01880 384 aa14.06□□□□□ -0.16
LIMS1-207ENST00000422797 PPLO60437 1756 aa14.06□□□□□ -0.16
LIMS1-207ENST00000422797 SLC4A3P48751 1232 aa14.05□□□□□ -0.16
LIMS1-207ENST00000422797 FAM43AQ8N2R8 423 aa14.05□□□□□ -0.16
LIMS1-207ENST00000422797 ADGRB1O14514 1584 aa14.05□□□□□ -0.16
LIMS1-207ENST00000422797 FRAT2O75474 233 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-207ENST00000422797 ABCC11Q96J66 1382 aa14.04□□□□□ -0.16
LIMS1-207ENST00000422797 TBC1D32Q96NH3 1257 aa14.04□□□□□ -0.16
LIMS1-207ENST00000422797 C14orf93Q9H972 538 aaKnown RBP14.04□□□□□ -0.16
LIMS1-207ENST00000422797 COG6Q9Y2V7 657 aa14.04□□□□□ -0.16
LIMS1-207ENST00000422797 NOS1P29475 1434 aa14.03□□□□□ -0.16
LIMS1-207ENST00000422797 ANKRD36BQ8N2N9 1353 aa14.03□□□□□ -0.16
LIMS1-207ENST00000422797 TCP11L2Q8N4U5 519 aa14.03□□□□□ -0.16
LIMS1-207ENST00000422797 UGGT1Q9NYU2 1555 aa14.02□□□□□ -0.16
LIMS1-207ENST00000422797 PANK1Q8TE04 598 aa14.02□□□□□ -0.16
LIMS1-207ENST00000422797 KIDINS220Q9ULH0 1771 aa14.02□□□□□ -0.17
LIMS1-207ENST00000422797 IL16Q14005 1332 aa14.01□□□□□ -0.17
LIMS1-207ENST00000422797 BRPF3Q9ULD4 1205 aa14.01□□□□□ -0.17
LIMS1-207ENST00000422797 HECW2Q9P2P5 1572 aa14.01□□□□□ -0.17
LIMS1-207ENST00000422797 EVC2Q86UK5 1308 aa14.01□□□□□ -0.17
LIMS1-207ENST00000422797 MVPQ14764 893 aaKnown RBP14□□□□□ -0.17
LIMS1-207ENST00000422797 ZKSCAN2Q63HK3 967 aa14□□□□□ -0.17
LIMS1-207ENST00000422797 MED14O60244 1454 aa14□□□□□ -0.17
LIMS1-207ENST00000422797 MLH3Q9UHC1 1453 aa13.99□□□□□ -0.17
LIMS1-207ENST00000422797 RSPH6AQ9H0K4 717 aa13.99□□□□□ -0.17
LIMS1-207ENST00000422797 PNNQ9H307 717 aaKnown RBP13.99□□□□□ -0.17
LIMS1-207ENST00000422797 ANTXR1Q9H6X2 564 aa13.99□□□□□ -0.17
LIMS1-207ENST00000422797 PDZRN3Q9UPQ7 1066 aa13.99□□□□□ -0.17
LIMS1-207ENST00000422797 HDAC1Q13547 482 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-207ENST00000422797 ISY1Q9ULR0 285 aaKnown RBP13.98□□□□□ -0.17
LIMS1-207ENST00000422797 GLI2P10070 1586 aa13.98□□□□□ -0.17
LIMS1-207ENST00000422797 EIF5BO60841 1220 aaKnown RBP13.97□□□□□ -0.17
LIMS1-207ENST00000422797 FTSJ3Q8IY81 847 aaKnown RBP13.97□□□□□ -0.17
LIMS1-207ENST00000422797 DDX19BQ9UMR2 479 aa13.97□□□□□ -0.17
LIMS1-207ENST00000422797 ZFYVE9O95405 1425 aa13.97□□□□□ -0.17
LIMS1-207ENST00000422797 NPATQ14207 1427 aa13.97□□□□□ -0.17
LIMS1-207ENST00000422797 PIK3C2BO00750 1634 aa13.97□□□□□ -0.17
LIMS1-207ENST00000422797 DZIP1LQ8IYY4 767 aaKnown RBP13.96□□□□□ -0.17
LIMS1-207ENST00000422797 CHMP4BQ9H444 224 aaKnown RBP13.96□□□□□ -0.17
LIMS1-207ENST00000422797 PCDHB15Q9Y5E8 787 aa13.96□□□□□ -0.17
LIMS1-207ENST00000422797 PTMSP20962 102 aa13.95□□□□□ -0.18
LIMS1-207ENST00000422797 MTHFSP49914 203 aa13.95□□□□□ -0.18
LIMS1-207ENST00000422797 RTN4Q9NQC3 1192 aaKnown RBP13.95□□□□□ -0.18
LIMS1-207ENST00000422797 ARHGEF28Q8N1W1 1705 aaKnown RBP13.95□□□□□ -0.18
LIMS1-207ENST00000422797 POGZQ7Z3K3 1410 aa13.95□□□□□ -0.18
LIMS1-207ENST00000422797 ZNF428Q96B54 188 aa13.95□□□□□ -0.18
LIMS1-207ENST00000422797 CHMP5Q9NZZ3 219 aa13.95□□□□□ -0.18
LIMS1-207ENST00000422797 ABCC3O15438 1527 aa13.95□□□□□ -0.18
LIMS1-207ENST00000422797 TULP4Q9NRJ4 1543 aa13.95□□□□□ -0.18
LIMS1-207ENST00000422797 KIF16BQ96L93 1317 aa13.94□□□□□ -0.18
LIMS1-207ENST00000422797 CAMSAP1Q5T5Y3 1602 aa13.94□□□□□ -0.18
LIMS1-207ENST00000422797 VGFO15240 615 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-207ENST00000422797 TBC1D2Q9BYX2 928 aa13.94□□□□□ -0.18
LIMS1-207ENST00000422797 REREQ9P2R6 1566 aa13.94□□□□□ -0.18
LIMS1-207ENST00000422797 ANKRD26Q9UPS8 1709 aa13.94□□□□□ -0.18
LIMS1-207ENST00000422797 ATAD2Q6PL18 1390 aa13.93□□□□□ -0.18
LIMS1-207ENST00000422797 IPO8O15397 1037 aaKnown RBP13.93□□□□□ -0.18
LIMS1-207ENST00000422797 SEC24BO95487 1268 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms