RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 NHSL1Q5SYE7 1610 aa24.05■■□□□ 1.44
LINC00404-201ENST00000418660 PLEKHH1Q9ULM0 1364 aa24.03■■□□□ 1.44
LINC00404-201ENST00000418660 CDC42BPGQ6DT37 1551 aa24.03■■□□□ 1.44
LINC00404-201ENST00000418660 SPATA31A6Q5VVP1 1343 aa24.03■■□□□ 1.44
LINC00404-201ENST00000418660 ORAI2Q96SN7 254 aa24.02■■□□□ 1.44
LINC00404-201ENST00000418660 RGS17Q9UGC6 210 aaPredicted RBP24.01■■□□□ 1.43
LINC00404-201ENST00000418660 SHPRHQ149N8 1683 aa24.01■■□□□ 1.43
LINC00404-201ENST00000418660 DDX17Q92841 729 aaKnown RBP24■■□□□ 1.43
LINC00404-201ENST00000418660 LRRC59Q96AG4 307 aaKnown RBP24■■□□□ 1.43
LINC00404-201ENST00000418660 ADGRB1O14514 1584 aa23.97■■□□□ 1.43
LINC00404-201ENST00000418660 ESCO1Q5FWF5 840 aa23.96■■□□□ 1.43
LINC00404-201ENST00000418660 DLC1Q96QB1 1528 aa23.95■■□□□ 1.43
LINC00404-201ENST00000418660 PRAM1Q96QH2 718 aa23.95■■□□□ 1.42
LINC00404-201ENST00000418660 LRP6O75581 1613 aa23.95■■□□□ 1.42
LINC00404-201ENST00000418660 SOS2Q07890 1332 aaPredicted RBP23.94■■□□□ 1.42
LINC00404-201ENST00000418660 POGKQ9P215 609 aa23.93■■□□□ 1.42
LINC00404-201ENST00000418660 NUTM2FA1L443 756 aa23.92■■□□□ 1.42
LINC00404-201ENST00000418660 FMN2Q9NZ56 1722 aa23.91■■□□□ 1.42
LINC00404-201ENST00000418660 MEX3CQ5U5Q3 659 aaKnown RBP23.91■■□□□ 1.42
LINC00404-201ENST00000418660 TRAK1Q9UPV9 953 aa23.91■■□□□ 1.42
LINC00404-201ENST00000418660 PNPLA6Q8IY17 1366 aa23.91■■□□□ 1.42
LINC00404-201ENST00000418660 NUTM2BA6NNL0 878 aaPredicted RBP23.9■■□□□ 1.42
LINC00404-201ENST00000418660 NUTM2EB1AL46 878 aaPredicted RBP23.9■■□□□ 1.42
LINC00404-201ENST00000418660 SAFB2Q14151 953 aaKnown RBP eCLIP23.9■■□□□ 1.42
LINC00404-201ENST00000418660 NUTM2AQ8IVF1 878 aaPredicted RBP23.9■■□□□ 1.42
LINC00404-201ENST00000418660 NPHP3Q7Z494 1330 aa23.89■■□□□ 1.42
LINC00404-201ENST00000418660 POTEAQ6S8J7 498 aa23.89■■□□□ 1.41
LINC00404-201ENST00000418660 FOXO3O43524 673 aa23.87■■□□□ 1.41
LINC00404-201ENST00000418660 PXDNQ92626 1479 aa23.84■■□□□ 1.41
LINC00404-201ENST00000418660 ZNF772Q68DY9 489 aaPredicted RBP23.83■■□□□ 1.41
LINC00404-201ENST00000418660 ADGRB2O60241 1585 aa23.82■■□□□ 1.4
LINC00404-201ENST00000418660 TRIM26Q12899 539 aaPredicted RBP23.82■■□□□ 1.4
LINC00404-201ENST00000418660 SIN3AQ96ST3 1273 aa23.82■■□□□ 1.4
LINC00404-201ENST00000418660 KIF1AQ12756 1690 aa23.82■■□□□ 1.4
LINC00404-201ENST00000418660 KIAA1210Q9ULL0 1709 aa23.81■■□□□ 1.4
LINC00404-201ENST00000418660 MINK1Q8N4C8 1332 aaPredicted RBP23.81■■□□□ 1.4
LINC00404-201ENST00000418660 XPCQ01831 940 aaPredicted RBP23.8■■□□□ 1.4
LINC00404-201ENST00000418660 ANKARQ7Z5J8 1434 aa23.8■■□□□ 1.4
LINC00404-201ENST00000418660 L3MBTL2Q969R5 705 aa23.8■■□□□ 1.4
LINC00404-201ENST00000418660 PHF8Q9UPP1 1060 aa23.8■■□□□ 1.4
LINC00404-201ENST00000418660 HIRIP3Q9BW71 556 aaPredicted RBP23.79■■□□□ 1.4
LINC00404-201ENST00000418660 NEUROD1Q13562 356 aa23.77■■□□□ 1.4
LINC00404-201ENST00000418660 NBPF1Q3BBV0 1214 aa23.77■■□□□ 1.4
LINC00404-201ENST00000418660 EIF3AQ14152 1382 aaKnown RBP23.77■■□□□ 1.4
LINC00404-201ENST00000418660 COL22A1Q8NFW1 1626 aaPredicted RBP23.77■■□□□ 1.4
LINC00404-201ENST00000418660 ARHGEF28Q8N1W1 1705 aaKnown RBP23.76■■□□□ 1.39
LINC00404-201ENST00000418660 RGPD8O14715 1765 aaPredicted RBP23.76■■□□□ 1.39
LINC00404-201ENST00000418660 WASLO00401 505 aaPredicted RBP23.76■■□□□ 1.39
LINC00404-201ENST00000418660 KRT28Q7Z3Y7 464 aa23.76■■□□□ 1.39
LINC00404-201ENST00000418660 AFF2P51816 1311 aa23.76■■□□□ 1.39
LINC00404-201ENST00000418660 USP32Q8NFA0 1604 aa23.75■■□□□ 1.39
LINC00404-201ENST00000418660 ADAMTS2O95450 1211 aa23.75■■□□□ 1.39
LINC00404-201ENST00000418660 C8orf37Q96NL8 207 aa23.75■■□□□ 1.39
LINC00404-201ENST00000418660 SPATA31A3Q5VYP0 1347 aa23.74■■□□□ 1.39
LINC00404-201ENST00000418660 PSME1Q06323 249 aa23.73■■□□□ 1.39
LINC00404-201ENST00000418660 TULP4Q9NRJ4 1543 aa23.72■■□□□ 1.39
LINC00404-201ENST00000418660 PRR36Q9H6K5 1346 aa23.71■■□□□ 1.39
LINC00404-201ENST00000418660 PMFBP1Q8TBY8 1022 aa23.71■■□□□ 1.39
LINC00404-201ENST00000418660 NGLY1Q96IV0 654 aa23.71■■□□□ 1.39
LINC00404-201ENST00000418660 RXRBP28702 533 aa23.68■■□□□ 1.38
LINC00404-201ENST00000418660 SBNO1A3KN83 1393 aa23.67■■□□□ 1.38
LINC00404-201ENST00000418660 TNS3Q68CZ2 1445 aa23.67■■□□□ 1.38
LINC00404-201ENST00000418660 FNBP4Q8N3X1 1017 aaPredicted RBP23.65■■□□□ 1.38
LINC00404-201ENST00000418660 NUDT16Q96DE0 195 aaKnown RBP23.65■■□□□ 1.38
LINC00404-201ENST00000418660 CDK19Q9BWU1 502 aa23.65■■□□□ 1.38
LINC00404-201ENST00000418660 QTRT2Q9H974 415 aaKnown RBP23.65■■□□□ 1.38
LINC00404-201ENST00000418660 CENPJQ9HC77 1338 aaPredicted RBP23.63■■□□□ 1.37
LINC00404-201ENST00000418660 TRPM1Q7Z4N2 1603 aa23.63■■□□□ 1.37
LINC00404-201ENST00000418660 GPRASP1Q5JY77 1395 aa23.63■■□□□ 1.37
LINC00404-201ENST00000418660 ATP7BP35670 1465 aa23.62■■□□□ 1.37
LINC00404-201ENST00000418660 NGDNQ8NEJ9 315 aaKnown RBP23.62■■□□□ 1.37
LINC00404-201ENST00000418660 USP21Q9UK80 565 aa23.62■■□□□ 1.37
LINC00404-201ENST00000418660 ARHGEF10O15013 1369 aa23.62■■□□□ 1.37
LINC00404-201ENST00000418660 LMOD2Q6P5Q4 547 aa23.61■■□□□ 1.37
LINC00404-201ENST00000418660 CDK12Q9NYV4 1490 aaPredicted RBP23.61■■□□□ 1.37
LINC00404-201ENST00000418660 RBM6P78332 1123 aaKnown RBP23.6■■□□□ 1.37
LINC00404-201ENST00000418660 ITSN1Q15811 1721 aa23.59■■□□□ 1.37
LINC00404-201ENST00000418660 MARF1Q9Y4F3 1742 aaKnown RBP23.59■■□□□ 1.37
LINC00404-201ENST00000418660 ROCK2O75116 1388 aaKnown RBP23.59■■□□□ 1.37
LINC00404-201ENST00000418660 CCDC61Q9Y6R9 512 aa23.58■■□□□ 1.37
LINC00404-201ENST00000418660 TRPM3Q9HCF6 1732 aaPredicted RBP23.57■■□□□ 1.36
LINC00404-201ENST00000418660 HAP1P54257 671 aaPredicted RBP23.57■■□□□ 1.36
LINC00404-201ENST00000418660 NBPF8Q3BBV2 869 aa23.57■■□□□ 1.36
LINC00404-201ENST00000418660 CABLES1Q8TDN4 633 aa23.57■■□□□ 1.36
LINC00404-201ENST00000418660 TRPC5Q9UL62 973 aaPredicted RBP23.57■■□□□ 1.36
LINC00404-201ENST00000418660 TONSLQ96HA7 1378 aa23.56■■□□□ 1.36
LINC00404-201ENST00000418660 BCL9LQ86UU0 1499 aa23.55■■□□□ 1.36
LINC00404-201ENST00000418660 QRICH2Q9H0J4 1663 aa23.54■■□□□ 1.36
LINC00404-201ENST00000418660 PLEKHG3A1L390 1219 aa23.54■■□□□ 1.36
LINC00404-201ENST00000418660 SRPK2P78362 688 aaKnown RBP23.54■■□□□ 1.36
LINC00404-201ENST00000418660 POLR3AO14802 1390 aaPredicted RBP23.53■■□□□ 1.36
LINC00404-201ENST00000418660 ATRNO75882 1429 aa23.53■■□□□ 1.36
LINC00404-201ENST00000418660 PLEKHG5O94827 1062 aa23.53■■□□□ 1.36
LINC00404-201ENST00000418660 TOPAZ1Q8N9V7 1692 aa23.53■■□□□ 1.36
LINC00404-201ENST00000418660 ALS2Q96Q42 1657 aa23.53■■□□□ 1.36
LINC00404-201ENST00000418660 PAK3O75914 559 aaPredicted RBP23.52■■□□□ 1.36
LINC00404-201ENST00000418660 ACEP12821 1306 aa23.52■■□□□ 1.36
LINC00404-201ENST00000418660 SLIT2O94813 1529 aa23.51■■□□□ 1.35
LINC00404-201ENST00000418660 CABP2Q9NPB3 220 aa23.51■■□□□ 1.35
LINC00404-201ENST00000418660 ABCA3Q99758 1704 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms