RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 MYOM1P52179 1685 aa13.49□□□□□ -0.25
RIF1-202ENST00000414861 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.48□□□□□ -0.25
RIF1-202ENST00000414861 MINK1Q8N4C8 1332 aaPredicted RBP13.48□□□□□ -0.25
RIF1-202ENST00000414861 KCNA6P17658 529 aa13.48□□□□□ -0.25
RIF1-202ENST00000414861 NWD1Q149M9 1564 aa13.48□□□□□ -0.25
RIF1-202ENST00000414861 STRCP1A6NGW2 1772 aa13.47□□□□□ -0.25
RIF1-202ENST00000414861 SIRT1Q96EB6 747 aa13.46□□□□□ -0.25
RIF1-202ENST00000414861 ADGRB2O60241 1585 aa13.44□□□□□ -0.26
RIF1-202ENST00000414861 EVC2Q86UK5 1308 aa13.44□□□□□ -0.26
RIF1-202ENST00000414861 NALCNQ8IZF0 1738 aa13.43□□□□□ -0.26
RIF1-202ENST00000414861 SLC24A1O60721 1099 aa13.42□□□□□ -0.26
RIF1-202ENST00000414861 CDCA8Q53HL2 280 aa13.42□□□□□ -0.26
RIF1-202ENST00000414861 CABP2Q9NPB3 220 aa13.42□□□□□ -0.26
RIF1-202ENST00000414861 RBM33Q96EV2 1170 aaKnown RBP13.42□□□□□ -0.26
RIF1-202ENST00000414861 NKTRP30414 1462 aaKnown RBP13.41□□□□□ -0.26
RIF1-202ENST00000414861 CDK19Q9BWU1 502 aa13.4□□□□□ -0.26
RIF1-202ENST00000414861 SRPK2P78362 688 aaKnown RBP13.4□□□□□ -0.26
RIF1-202ENST00000414861 WASLO00401 505 aaPredicted RBP13.39□□□□□ -0.27
RIF1-202ENST00000414861 USP32Q8NFA0 1604 aa13.38□□□□□ -0.27
RIF1-202ENST00000414861 ATP7BP35670 1465 aa13.37□□□□□ -0.27
RIF1-202ENST00000414861 ADGRL3Q9HAR2 1447 aa13.37□□□□□ -0.27
RIF1-202ENST00000414861 ZNF335Q9H4Z2 1342 aaPredicted RBP13.37□□□□□ -0.27
RIF1-202ENST00000414861 PUS7Q96PZ0 661 aaKnown RBP13.37□□□□□ -0.27
RIF1-202ENST00000414861 CDC42BPGQ6DT37 1551 aa13.37□□□□□ -0.27
RIF1-202ENST00000414861 XIRP1Q702N8 1843 aaKnown RBP13.37□□□□□ -0.27
RIF1-202ENST00000414861 ATAD2Q6PL18 1390 aa13.37□□□□□ -0.27
RIF1-202ENST00000414861 PANK3Q9H999 370 aa13.37□□□□□ -0.27
RIF1-202ENST00000414861 RGPD8O14715 1765 aaPredicted RBP13.37□□□□□ -0.27
RIF1-202ENST00000414861 FMN2Q9NZ56 1722 aa13.37□□□□□ -0.27
RIF1-202ENST00000414861 TOPAZ1Q8N9V7 1692 aa13.36□□□□□ -0.27
RIF1-202ENST00000414861 PRR36Q9H6K5 1346 aa13.36□□□□□ -0.27
RIF1-202ENST00000414861 SLC12A5Q9H2X9 1139 aa13.36□□□□□ -0.27
RIF1-202ENST00000414861 TMC1Q8TDI8 760 aa13.36□□□□□ -0.27
RIF1-202ENST00000414861 PROSER2Q86WR7 435 aaPredicted RBP13.35□□□□□ -0.27
RIF1-202ENST00000414861 MIER1Q8N108 512 aa13.35□□□□□ -0.27
RIF1-202ENST00000414861 TMEM94Q12767 1356 aa13.34□□□□□ -0.27
RIF1-202ENST00000414861 NUTM2FA1L443 756 aa13.34□□□□□ -0.27
RIF1-202ENST00000414861 CD163L1Q9NR16 1453 aa13.34□□□□□ -0.27
RIF1-202ENST00000414861 PER1O15534 1290 aaPredicted RBP13.33□□□□□ -0.28
RIF1-202ENST00000414861 NINLQ9Y2I6 1382 aa13.33□□□□□ -0.28
RIF1-202ENST00000414861 NUDT16Q96DE0 195 aaKnown RBP13.33□□□□□ -0.28
RIF1-202ENST00000414861 DMRT2Q9Y5R5 561 aa13.33□□□□□ -0.28
RIF1-202ENST00000414861 LRRC7Q96NW7 1537 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 PPIP5K1Q6PFW1 1433 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 A0A1W2PP64 1363 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 ITSN1Q15811 1721 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 ANKRD36BQ8N2N9 1353 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 AEBP2Q6ZN18 517 aaPredicted RBP13.32□□□□□ -0.28
RIF1-202ENST00000414861 C14orf37Q86TY3 774 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 CARD14Q9BXL6 1004 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 CABP1Q9NZU7 370 aa13.32□□□□□ -0.28
RIF1-202ENST00000414861 CNGB1Q14028 1251 aaPredicted RBP13.31□□□□□ -0.28
RIF1-202ENST00000414861 AKAP12Q02952 1782 aa13.3□□□□□ -0.28
RIF1-202ENST00000414861 ANKARQ7Z5J8 1434 aa13.3□□□□□ -0.28
RIF1-202ENST00000414861 NSD3Q9BZ95 1437 aa13.3□□□□□ -0.28
RIF1-202ENST00000414861 CCDC61Q9Y6R9 512 aa13.3□□□□□ -0.28
RIF1-202ENST00000414861 NCOA3Q9Y6Q9 1424 aa13.29□□□□□ -0.28
RIF1-202ENST00000414861 MON2Q7Z3U7 1717 aa13.29□□□□□ -0.28
RIF1-202ENST00000414861 ANP32CO43423 234 aa13.28□□□□□ -0.28
RIF1-202ENST00000414861 CPSF1Q10570 1443 aaKnown RBP13.27□□□□□ -0.28
RIF1-202ENST00000414861 LTBP4Q8N2S1 1624 aa13.27□□□□□ -0.28
RIF1-202ENST00000414861 AMER1Q5JTC6 1135 aaPredicted RBP13.27□□□□□ -0.29
RIF1-202ENST00000414861 C19orf44Q9H6X5 657 aa13.27□□□□□ -0.29
RIF1-202ENST00000414861 PRKRIP1Q9H875 184 aaPredicted RBP13.27□□□□□ -0.29
RIF1-202ENST00000414861 KNSTRNQ9Y448 316 aa13.27□□□□□ -0.29
RIF1-202ENST00000414861 DCCP43146 1447 aa13.26□□□□□ -0.29
RIF1-202ENST00000414861 TERF2IPQ9NYB0 399 aa13.26□□□□□ -0.29
RIF1-202ENST00000414861 NRKQ7Z2Y5 1582 aa13.26□□□□□ -0.29
RIF1-202ENST00000414861 CC2D1BQ5T0F9 858 aaKnown RBP13.26□□□□□ -0.29
RIF1-202ENST00000414861 MST1RQ04912 1400 aa13.25□□□□□ -0.29
RIF1-202ENST00000414861 MSH6P52701 1360 aa13.25□□□□□ -0.29
RIF1-202ENST00000414861 PLEKHG3A1L390 1219 aa13.24□□□□□ -0.29
RIF1-202ENST00000414861 HDGFL2Q7Z4V5 671 aaPredicted RBP13.24□□□□□ -0.29
RIF1-202ENST00000414861 PMFBP1Q8TBY8 1022 aa13.24□□□□□ -0.29
RIF1-202ENST00000414861 KTN1Q86UP2 1357 aaKnown RBP13.24□□□□□ -0.29
RIF1-202ENST00000414861 ACEP12821 1306 aa13.24□□□□□ -0.29
RIF1-202ENST00000414861 KIF20BQ96Q89 1820 aa13.24□□□□□ -0.29
RIF1-202ENST00000414861 C1orf167Q5SNV9 1468 aa13.24□□□□□ -0.29
RIF1-202ENST00000414861 PARD3Q8TEW0 1356 aa13.24□□□□□ -0.29
RIF1-202ENST00000414861 POLR3AO14802 1390 aaPredicted RBP13.23□□□□□ -0.29
RIF1-202ENST00000414861 NPC1L1Q9UHC9 1359 aa13.23□□□□□ -0.29
RIF1-202ENST00000414861 ATF3P18847 181 aa13.22□□□□□ -0.29
RIF1-202ENST00000414861 USP6P35125 1406 aa13.22□□□□□ -0.29
RIF1-202ENST00000414861 EDC4Q6P2E9 1401 aaKnown RBP13.22□□□□□ -0.29
RIF1-202ENST00000414861 ANKRD26Q9UPS8 1709 aa13.22□□□□□ -0.29
RIF1-202ENST00000414861 ORAI2Q96SN7 254 aa13.21□□□□□ -0.29
RIF1-202ENST00000414861 CGNL1Q0VF96 1302 aa13.21□□□□□ -0.29
RIF1-202ENST00000414861 ESCO1Q5FWF5 840 aa13.2□□□□□ -0.3
RIF1-202ENST00000414861 CADPS2Q86UW7 1296 aa13.2□□□□□ -0.3
RIF1-202ENST00000414861 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.2□□□□□ -0.3
RIF1-202ENST00000414861 PHF8Q9UPP1 1060 aa13.2□□□□□ -0.3
RIF1-202ENST00000414861 KIF1AQ12756 1690 aa13.2□□□□□ -0.3
RIF1-202ENST00000414861 SSH2Q76I76 1423 aa13.2□□□□□ -0.3
RIF1-202ENST00000414861 NGDNQ8NEJ9 315 aaKnown RBP13.19□□□□□ -0.3
RIF1-202ENST00000414861 FYB1O15117 783 aa13.18□□□□□ -0.3
RIF1-202ENST00000414861 RALBP1Q15311 655 aa13.18□□□□□ -0.3
RIF1-202ENST00000414861 CCDC184Q52MB2 194 aa13.18□□□□□ -0.3
RIF1-202ENST00000414861 ZNF692Q9BU19 519 aaPredicted RBP13.18□□□□□ -0.3
RIF1-202ENST00000414861 GGNBP2Q9H3C7 697 aa13.18□□□□□ -0.3
RIF1-202ENST00000414861 PIK3C2AO00443 1686 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms