RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 C1orf167Q5SNV9 1468 aa21.53■■□□□ 1.04
LIMS4-201ENST00000413601 SIRT1Q96EB6 747 aa21.51■■□□□ 1.03
LIMS4-201ENST00000413601 SIN3AQ96ST3 1273 aa21.5■■□□□ 1.03
LIMS4-201ENST00000413601 FMN2Q9NZ56 1722 aa21.49■■□□□ 1.03
LIMS4-201ENST00000413601 RGPD8O14715 1765 aaPredicted RBP21.49■■□□□ 1.03
LIMS4-201ENST00000413601 JCADQ9P266 1359 aa21.48■■□□□ 1.03
LIMS4-201ENST00000413601 SHPRHQ149N8 1683 aa21.48■■□□□ 1.03
LIMS4-201ENST00000413601 ILDR2Q71H61 639 aa21.48■■□□□ 1.03
LIMS4-201ENST00000413601 DDX17Q92841 729 aaKnown RBP21.48■■□□□ 1.03
LIMS4-201ENST00000413601 ORAI2Q96SN7 254 aa21.48■■□□□ 1.03
LIMS4-201ENST00000413601 KIAA1210Q9ULL0 1709 aa21.48■■□□□ 1.03
LIMS4-201ENST00000413601 DLC1Q96QB1 1528 aa21.48■■□□□ 1.03
LIMS4-201ENST00000413601 SAFB2Q14151 953 aaKnown RBP eCLIP21.47■■□□□ 1.03
LIMS4-201ENST00000413601 PRAM1Q96QH2 718 aa21.47■■□□□ 1.03
LIMS4-201ENST00000413601 TRAK1Q9UPV9 953 aa21.46■■□□□ 1.03
LIMS4-201ENST00000413601 NUTM2FA1L443 756 aa21.45■■□□□ 1.02
LIMS4-201ENST00000413601 NEUROD1Q13562 356 aa21.45■■□□□ 1.02
LIMS4-201ENST00000413601 POGKQ9P215 609 aa21.45■■□□□ 1.02
LIMS4-201ENST00000413601 ARHGEF28Q8N1W1 1705 aaKnown RBP21.45■■□□□ 1.02
LIMS4-201ENST00000413601 ESCO1Q5FWF5 840 aa21.43■■□□□ 1.02
LIMS4-201ENST00000413601 L3MBTL2Q969R5 705 aa21.43■■□□□ 1.02
LIMS4-201ENST00000413601 LRRC59Q96AG4 307 aaKnown RBP21.39■■□□□ 1.01
LIMS4-201ENST00000413601 ADGRB2O60241 1585 aa21.39■■□□□ 1.01
LIMS4-201ENST00000413601 SPATA31A6Q5VVP1 1343 aa21.38■■□□□ 1.01
LIMS4-201ENST00000413601 NBPF1Q3BBV0 1214 aa21.38■■□□□ 1.01
LIMS4-201ENST00000413601 LRP6O75581 1613 aa21.37■■□□□ 1.01
LIMS4-201ENST00000413601 HIRIP3Q9BW71 556 aaPredicted RBP21.37■■□□□ 1.01
LIMS4-201ENST00000413601 KIF1AQ12756 1690 aa21.37■■□□□ 1.01
LIMS4-201ENST00000413601 USP32Q8NFA0 1604 aa21.37■■□□□ 1.01
LIMS4-201ENST00000413601 SOS2Q07890 1332 aaPredicted RBP21.36■■□□□ 1.01
LIMS4-201ENST00000413601 MINK1Q8N4C8 1332 aaPredicted RBP21.36■■□□□ 1.01
LIMS4-201ENST00000413601 RGS17Q9UGC6 210 aaPredicted RBP21.35■■□□□ 1.01
LIMS4-201ENST00000413601 TRPM1Q7Z4N2 1603 aa21.35■■□□□ 1.01
LIMS4-201ENST00000413601 NUTM2BA6NNL0 878 aaPredicted RBP21.34■■□□□ 1.01
LIMS4-201ENST00000413601 NUTM2EB1AL46 878 aaPredicted RBP21.34■■□□□ 1.01
LIMS4-201ENST00000413601 FOXO3O43524 673 aa21.34■■□□□ 1.01
LIMS4-201ENST00000413601 NUTM2AQ8IVF1 878 aaPredicted RBP21.34■■□□□ 1.01
LIMS4-201ENST00000413601 PXDNQ92626 1479 aa21.33■■□□□ 1.01
LIMS4-201ENST00000413601 NPHP3Q7Z494 1330 aa21.33■■□□□ 1.01
LIMS4-201ENST00000413601 PNPLA6Q8IY17 1366 aa21.33■■□□□ 1
LIMS4-201ENST00000413601 XPCQ01831 940 aaPredicted RBP21.32■■□□□ 1
LIMS4-201ENST00000413601 MEX3CQ5U5Q3 659 aaKnown RBP21.31■■□□□ 1
LIMS4-201ENST00000413601 PHF8Q9UPP1 1060 aa21.29■■□□□ 1
LIMS4-201ENST00000413601 ANKARQ7Z5J8 1434 aa21.29■■□□□ 1
LIMS4-201ENST00000413601 WASLO00401 505 aaPredicted RBP21.28■■□□□ 1
LIMS4-201ENST00000413601 COL22A1Q8NFW1 1626 aaPredicted RBP21.28■■□□□ 1
LIMS4-201ENST00000413601 TULP4Q9NRJ4 1543 aa21.28■■□□□ 1
LIMS4-201ENST00000413601 QRICH2Q9H0J4 1663 aa21.27■■□□□ 1
LIMS4-201ENST00000413601 ITSN1Q15811 1721 aa21.26■□□□□ 0.99
LIMS4-201ENST00000413601 PRR36Q9H6K5 1346 aa21.26■□□□□ 0.99
LIMS4-201ENST00000413601 TONSLQ96HA7 1378 aa21.25■□□□□ 0.99
LIMS4-201ENST00000413601 POTEAQ6S8J7 498 aa21.25■□□□□ 0.99
LIMS4-201ENST00000413601 PCGF6Q9BYE7 350 aa21.25■□□□□ 0.99
LIMS4-201ENST00000413601 EIF3AQ14152 1382 aaKnown RBP21.24■□□□□ 0.99
LIMS4-201ENST00000413601 NBPF8Q3BBV2 869 aa21.24■□□□□ 0.99
LIMS4-201ENST00000413601 KRT28Q7Z3Y7 464 aa21.24■□□□□ 0.99
LIMS4-201ENST00000413601 PMFBP1Q8TBY8 1022 aa21.24■□□□□ 0.99
LIMS4-201ENST00000413601 SOCS7O14512 581 aa21.23■□□□□ 0.99
LIMS4-201ENST00000413601 MARF1Q9Y4F3 1742 aaKnown RBP21.23■□□□□ 0.99
LIMS4-201ENST00000413601 ROCK2O75116 1388 aaKnown RBP21.23■□□□□ 0.99
LIMS4-201ENST00000413601 CDK19Q9BWU1 502 aa21.21■□□□□ 0.99
LIMS4-201ENST00000413601 CENPJQ9HC77 1338 aaPredicted RBP21.21■□□□□ 0.99
LIMS4-201ENST00000413601 ATP7BP35670 1465 aa21.2■□□□□ 0.98
LIMS4-201ENST00000413601 ADAMTS2O95450 1211 aa21.2■□□□□ 0.98
LIMS4-201ENST00000413601 PSME1Q06323 249 aa21.2■□□□□ 0.98
LIMS4-201ENST00000413601 SPATA31A3Q5VYP0 1347 aa21.2■□□□□ 0.98
LIMS4-201ENST00000413601 TRPM3Q9HCF6 1732 aaPredicted RBP21.2■□□□□ 0.98
LIMS4-201ENST00000413601 TOPAZ1Q8N9V7 1692 aa21.19■□□□□ 0.98
LIMS4-201ENST00000413601 NUDT16Q96DE0 195 aaKnown RBP21.19■□□□□ 0.98
LIMS4-201ENST00000413601 C8orf37Q96NL8 207 aa21.19■□□□□ 0.98
LIMS4-201ENST00000413601 ZNF772Q68DY9 489 aaPredicted RBP21.17■□□□□ 0.98
LIMS4-201ENST00000413601 AFF2P51816 1311 aa21.17■□□□□ 0.98
LIMS4-201ENST00000413601 TNS3Q68CZ2 1445 aa21.17■□□□□ 0.98
LIMS4-201ENST00000413601 SBNO1A3KN83 1393 aa21.15■□□□□ 0.98
LIMS4-201ENST00000413601 NGDNQ8NEJ9 315 aaKnown RBP21.15■□□□□ 0.98
LIMS4-201ENST00000413601 ABCA3Q99758 1704 aa21.15■□□□□ 0.98
LIMS4-201ENST00000413601 ALS2Q96Q42 1657 aa21.15■□□□□ 0.98
LIMS4-201ENST00000413601 GPRASP1Q5JY77 1395 aa21.14■□□□□ 0.98
LIMS4-201ENST00000413601 LMOD2Q6P5Q4 547 aa21.14■□□□□ 0.97
LIMS4-201ENST00000413601 NGLY1Q96IV0 654 aa21.14■□□□□ 0.97
LIMS4-201ENST00000413601 SRPK2P78362 688 aaKnown RBP21.13■□□□□ 0.97
LIMS4-201ENST00000413601 RALGAPBQ86X10 1494 aa21.13■□□□□ 0.97
LIMS4-201ENST00000413601 PLEKHG5O94827 1062 aa21.11■□□□□ 0.97
LIMS4-201ENST00000413601 CARD11Q9BXL7 1154 aa21.11■□□□□ 0.97
LIMS4-201ENST00000413601 CABP2Q9NPB3 220 aa21.11■□□□□ 0.97
LIMS4-201ENST00000413601 CCDC61Q9Y6R9 512 aa21.11■□□□□ 0.97
LIMS4-201ENST00000413601 ARHGEF10O15013 1369 aa21.1■□□□□ 0.97
LIMS4-201ENST00000413601 CABLES1Q8TDN4 633 aa21.09■□□□□ 0.97
LIMS4-201ENST00000413601 ACEP12821 1306 aa21.08■□□□□ 0.97
LIMS4-201ENST00000413601 PPIP5K1Q6PFW1 1433 aa21.07■□□□□ 0.96
LIMS4-201ENST00000413601 PLEKHG3A1L390 1219 aa21.07■□□□□ 0.96
LIMS4-201ENST00000413601 PAK3O75914 559 aaPredicted RBP21.07■□□□□ 0.96
LIMS4-201ENST00000413601 HAP1P54257 671 aaPredicted RBP21.07■□□□□ 0.96
LIMS4-201ENST00000413601 QTRT2Q9H974 415 aaKnown RBP21.07■□□□□ 0.96
LIMS4-201ENST00000413601 POLR3AO14802 1390 aaPredicted RBP21.07■□□□□ 0.96
LIMS4-201ENST00000413601 CRYBG1Q9Y4K1 1723 aa21.07■□□□□ 0.96
LIMS4-201ENST00000413601 EVC2Q86UK5 1308 aa21.06■□□□□ 0.96
LIMS4-201ENST00000413601 USP21Q9UK80 565 aa21.06■□□□□ 0.96
LIMS4-201ENST00000413601 RXRBP28702 533 aa21.05■□□□□ 0.96
LIMS4-201ENST00000413601 FNBP4Q8N3X1 1017 aaPredicted RBP21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms