RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ZFYVE16Q7Z3T8 1539 aa6.69□□□□□ -1.34
SF3B1-202ENST00000409915 KDM5CP41229 1560 aa6.69□□□□□ -1.34
SF3B1-202ENST00000409915 MYOM3Q5VTT5 1437 aa6.68□□□□□ -1.34
SF3B1-202ENST00000409915 ZNF316A6NFI3 1004 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-202ENST00000409915 EMP3P54852 163 aa6.68□□□□□ -1.34
SF3B1-202ENST00000409915 KRI1Q8N9T8 703 aaKnown RBP6.68□□□□□ -1.34
SF3B1-202ENST00000409915 CLUAP1Q96AJ1 413 aa6.68□□□□□ -1.34
SF3B1-202ENST00000409915 GZF1Q9H116 711 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-202ENST00000409915 HECW2Q9P2P5 1572 aa6.68□□□□□ -1.34
SF3B1-202ENST00000409915 SIGLEC1Q9BZZ2 1709 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 DIP2CQ9Y2E4 1556 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 A6NJR5 290 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 PDE4DQ08499 809 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 E2F4Q16254 413 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 ZNF710Q8N1W2 664 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 MYT1LQ9UL68 1186 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 ABCA6Q8N139 1617 aa6.67□□□□□ -1.34
SF3B1-202ENST00000409915 PLEKHH2Q8IVE3 1493 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 MBD5Q9P267 1494 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 POTEB3A0JP26 581 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 POTEBQ6S5H4 581 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 CHMP4AQ9BY43 222 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 FGD6Q6ZV73 1430 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 KIAA1107Q9UPP5 1409 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 ATP7AQ04656 1500 aa6.66□□□□□ -1.34
SF3B1-202ENST00000409915 INO80Q9ULG1 1556 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-202ENST00000409915 KIDINS220Q9ULH0 1771 aa6.65□□□□□ -1.34
SF3B1-202ENST00000409915 KDM4FA0A1W2PPD8 638 aa6.65□□□□□ -1.34
SF3B1-202ENST00000409915 C2orf72A6NCS6 295 aa6.65□□□□□ -1.34
SF3B1-202ENST00000409915 E9PSI1 815 aa6.65□□□□□ -1.34
SF3B1-202ENST00000409915 SPAG9O60271 1321 aaKnown RBP6.65□□□□□ -1.35
SF3B1-202ENST00000409915 ARID4BQ4LE39 1312 aaPredicted RBP6.65□□□□□ -1.35
SF3B1-202ENST00000409915 C9orf84Q5VXU9 1444 aa6.65□□□□□ -1.35
SF3B1-202ENST00000409915 CCDC141Q6ZP82 1450 aa6.65□□□□□ -1.35
SF3B1-202ENST00000409915 MAGI2Q86UL8 1455 aa6.65□□□□□ -1.35
SF3B1-202ENST00000409915 MLH3Q9UHC1 1453 aa6.65□□□□□ -1.35
SF3B1-202ENST00000409915 PTPN23Q9H3S7 1636 aa6.65□□□□□ -1.35
SF3B1-202ENST00000409915 FAM205CA6NFA0 338 aa6.64□□□□□ -1.35
SF3B1-202ENST00000409915 KIF3CO14782 793 aa6.64□□□□□ -1.35
SF3B1-202ENST00000409915 TRIM66O15016 1216 aa6.64□□□□□ -1.35
SF3B1-202ENST00000409915 MLECQ14165 292 aa6.64□□□□□ -1.35
SF3B1-202ENST00000409915 FAM117AQ9C073 453 aa6.64□□□□□ -1.35
SF3B1-202ENST00000409915 MIA2Q96PC5 1412 aa6.64□□□□□ -1.35
SF3B1-202ENST00000409915 ATP10AO60312 1499 aa6.64□□□□□ -1.35
SF3B1-202ENST00000409915 ONECUT3O60422 494 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-202ENST00000409915 ARHGEF5Q12774 1597 aa6.63□□□□□ -1.35
SF3B1-202ENST00000409915 TCOF1Q13428 1488 aaKnown RBP6.63□□□□□ -1.35
SF3B1-202ENST00000409915 BCORL1Q5H9F3 1711 aa6.62□□□□□ -1.35
SF3B1-202ENST00000409915 MADDQ8WXG6 1647 aa6.62□□□□□ -1.35
SF3B1-202ENST00000409915 FAM50AQ14320 339 aaKnown RBP6.62□□□□□ -1.35
SF3B1-202ENST00000409915 KHSRPQ92945 711 aaKnown RBP eCLIP6.62□□□□□ -1.354e-10■■■■■ 27
SF3B1-202ENST00000409915 CCDC97Q96F63 343 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-202ENST00000409915 ABCC5O15440 1437 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 RIMBP2O15034 1052 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 CENPBP07199 599 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-202ENST00000409915 DOK7Q18PE1 504 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 GPIHBP1Q8IV16 184 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 RETREG2Q8NC44 543 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 USP35Q9P2H5 1018 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 CROCC2H7BZ55 1655 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 ADAMTSL3P82987 1691 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 ADGBQ8N7X0 1667 aa6.61□□□□□ -1.35
SF3B1-202ENST00000409915 DNMT1P26358 1616 aaKnown RBP6.61□□□□□ -1.35
SF3B1-202ENST00000409915 A2MP01023 1474 aa6.6□□□□□ -1.35
SF3B1-202ENST00000409915 DAPK1P53355 1430 aa6.6□□□□□ -1.35
SF3B1-202ENST00000409915 FBXW7Q969H0 707 aa6.6□□□□□ -1.35
SF3B1-202ENST00000409915 SERPINA10Q9UK55 444 aa6.6□□□□□ -1.35
SF3B1-202ENST00000409915 RIMS1Q86UR5 1692 aaKnown RBP6.6□□□□□ -1.35
SF3B1-202ENST00000409915 PLXNC1O60486 1568 aa6.6□□□□□ -1.35
SF3B1-202ENST00000409915 REREQ9P2R6 1566 aa6.6□□□□□ -1.35
SF3B1-202ENST00000409915 RTEL1-TNFRSF6BF6WH68 1400 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 PLEKHG3A1L390 1219 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 TSPY4P0CV99 314 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 TSPY10P0CW01 314 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 ITGAEP38570 1179 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 HS3ST6Q96QI5 342 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 CHIC2Q9UKJ5 165 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 MAST1Q9Y2H9 1570 aa6.59□□□□□ -1.35
SF3B1-202ENST00000409915 SHANK2Q9UPX8 1470 aa6.59□□□□□ -1.36
SF3B1-202ENST00000409915 PTPRKQ15262 1439 aa6.59□□□□□ -1.36
SF3B1-202ENST00000409915 ERBB3P21860 1342 aa6.58□□□□□ -1.36
SF3B1-202ENST00000409915 IRF5Q13568 498 aa6.58□□□□□ -1.36
SF3B1-202ENST00000409915 DDRGK1Q96HY6 314 aa6.58□□□□□ -1.36
SF3B1-202ENST00000409915 AGLP35573 1532 aa6.58□□□□□ -1.36
SF3B1-202ENST00000409915 FER1L4A9Z1Z3 1794 aa6.58□□□□□ -1.36
SF3B1-202ENST00000409915 PTPRMP28827 1452 aa6.58□□□□□ -1.36
SF3B1-202ENST00000409915 DHX29Q7Z478 1369 aaKnown RBP6.57□□□□□ -1.36
SF3B1-202ENST00000409915 KIF15Q9NS87 1388 aa6.57□□□□□ -1.36
SF3B1-202ENST00000409915 HOXB1P14653 301 aaPredicted RBP6.57□□□□□ -1.36
SF3B1-202ENST00000409915 RBM26Q5T8P6 1007 aaKnown RBP6.57□□□□□ -1.36
SF3B1-202ENST00000409915 RSPH4AQ5TD94 716 aa6.57□□□□□ -1.36
SF3B1-202ENST00000409915 GPR153Q6NV75 609 aa6.57□□□□□ -1.36
SF3B1-202ENST00000409915 RRP7BPQ9NSQ0 103 aa6.57□□□□□ -1.36
SF3B1-202ENST00000409915 CEBPAP49715 358 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-202ENST00000409915 ARSIQ5FYB1 569 aa6.56□□□□□ -1.36
SF3B1-202ENST00000409915 GGT6Q6P531 493 aa6.56□□□□□ -1.36
SF3B1-202ENST00000409915 PROSER2Q86WR7 435 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-202ENST00000409915 RRBP1Q9P2E9 1410 aaKnown RBP6.56□□□□□ -1.36
SF3B1-202ENST00000409915 NCKAP5LQ9HCH0 1330 aa6.55□□□□□ -1.36
SF3B1-202ENST00000409915 ACIN1Q9UKV3 1341 aaKnown RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms