RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 FCHSD2O94868 740 aa4.29□□□□□ -1.72
VPS13C-203ENST00000395896 TNNT2P45379 298 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-203ENST00000395896 PSME1Q06323 249 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 DDX19BQ9UMR2 479 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 MINK1Q8N4C8 1332 aaPredicted RBP4.28□□□□□ -1.72
VPS13C-203ENST00000395896 PRAM1Q96QH2 718 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 ATF3P18847 181 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 NPATQ14207 1427 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 CENPQQ7L2Z9 268 aaPredicted RBP4.28□□□□□ -1.72
VPS13C-203ENST00000395896 WWC1Q8IX03 1113 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 GLI2P10070 1586 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 LMTK2Q8IWU2 1503 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 ANP32BQ92688 251 aaKnown RBP4.28□□□□□ -1.72
VPS13C-203ENST00000395896 GAS2L2Q8NHY3 880 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 SIRT1Q96EB6 747 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 LRPPRCP42704 1394 aaKnown RBP4.28□□□□□ -1.72
VPS13C-203ENST00000395896 LMOD2Q6P5Q4 547 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 PIK3C2GO75747 1445 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 SYNMO15061 1565 aa4.28□□□□□ -1.72
VPS13C-203ENST00000395896 PAK3O75914 559 aaPredicted RBP4.28□□□□□ -1.72
VPS13C-203ENST00000395896 KDM5CP41229 1560 aa4.28□□□□□ -1.73
VPS13C-203ENST00000395896 NOS1P29475 1434 aa4.28□□□□□ -1.73
VPS13C-203ENST00000395896 MTHFSP49914 203 aa4.28□□□□□ -1.73
VPS13C-203ENST00000395896 CADPS2Q86UW7 1296 aa4.28□□□□□ -1.73
VPS13C-203ENST00000395896 INO80Q9ULG1 1556 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-203ENST00000395896 PARD3Q8TEW0 1356 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 NKTRP30414 1462 aaKnown RBP4.27□□□□□ -1.73
VPS13C-203ENST00000395896 SMC4Q9NTJ3 1288 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 ZMYM3Q14202 1370 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 ZKSCAN2Q63HK3 967 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 FRAT1Q92837 279 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-203ENST00000395896 NLRP1Q9C000 1473 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 RNF17Q9BXT8 1623 aaKnown RBP4.27□□□□□ -1.73
VPS13C-203ENST00000395896 TTC21AQ8NDW8 1320 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 GOLGA6L22H0YM25 854 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 TTC21BQ7Z4L5 1316 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 SETBP1Q9Y6X0 1596 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 PPP2R1AP30153 589 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 SLC12A5Q9H2X9 1139 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 TBX22Q9Y458 520 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 AGLP35573 1532 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 TEFQ10587 303 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 CHMP4CQ96CF2 233 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 DEPDC5O75140 1603 aa4.27□□□□□ -1.73
VPS13C-203ENST00000395896 API5Q9BZZ5 524 aaKnown RBP4.27□□□□□ -1.73
VPS13C-203ENST00000395896 TESK2Q96S53 571 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 MAP3K4Q9Y6R4 1608 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 KIDINS220Q9ULH0 1771 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 PIK3R4Q99570 1358 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 TMEM132EQ6IEE7 984 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 HSP90B1P14625 803 aaKnown RBP4.26□□□□□ -1.73
VPS13C-203ENST00000395896 CCDC27Q2M243 656 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 WASLO00401 505 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-203ENST00000395896 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.26□□□□□ -1.734e-6■■■□□ 17.3
VPS13C-203ENST00000395896 NSD3Q9BZ95 1437 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 POLR3AO14802 1390 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-203ENST00000395896 SOS1Q07889 1333 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-203ENST00000395896 RRP1P56182 461 aaKnown RBP4.26□□□□□ -1.73
VPS13C-203ENST00000395896 CDK19Q9BWU1 502 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 ANO8Q9HCE9 1232 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-203ENST00000395896 ADGRF5Q8IZF2 1346 aa4.26□□□□□ -1.73
VPS13C-203ENST00000395896 LRRFIP1Q32MZ4 808 aaKnown RBP4.25□□□□□ -1.73
VPS13C-203ENST00000395896 TRPM1Q7Z4N2 1603 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 MCCP23508 829 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 NLRP6P59044 892 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 NEXNQ0ZGT2 675 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 E9PCH4 1651 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 IL16Q14005 1332 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 HSP90AB1P08238 724 aaKnown RBP4.25□□□□□ -1.73
VPS13C-203ENST00000395896 C1orf141Q5JVX7 400 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 APAF1O14727 1248 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 ABTB2Q8N961 1025 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 YTHDC2Q9H6S0 1430 aaKnown RBP4.25□□□□□ -1.73
VPS13C-203ENST00000395896 ABCC3O15438 1527 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 ERCC6L2Q5T890 1561 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 DDX58O95786 925 aaKnown RBP4.25□□□□□ -1.73
VPS13C-203ENST00000395896 TCP11L2Q8N4U5 519 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 CABP1Q9NZU7 370 aa4.25□□□□□ -1.73
VPS13C-203ENST00000395896 RIMS2Q9UQ26 1411 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 NUDT16Q96DE0 195 aaKnown RBP4.24□□□□□ -1.73
VPS13C-203ENST00000395896 RIPK4P57078 832 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 AMER1Q5JTC6 1135 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-203ENST00000395896 RAPGEF4Q8WZA2 1011 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 KIF24Q5T7B8 1368 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 GPATCH3Q96I76 525 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 PTMSP20962 102 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 ADAMTS8Q9UP79 889 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 LAS1LQ9Y4W2 734 aaKnown RBP4.24□□□□□ -1.73
VPS13C-203ENST00000395896 HSP90AB4PQ58FF6 505 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 PER1O15534 1290 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-203ENST00000395896 AMOTQ4VCS5 1084 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 FAM135BQ49AJ0 1406 aa4.24□□□□□ -1.73
VPS13C-203ENST00000395896 USP35Q9P2H5 1018 aa4.23□□□□□ -1.73
VPS13C-203ENST00000395896 NUTM2DQ5VT03 806 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-203ENST00000395896 DZIP1LQ8IYY4 767 aaKnown RBP4.23□□□□□ -1.73
VPS13C-203ENST00000395896 PDIA4P13667 645 aaKnown RBP4.23□□□□□ -1.73
VPS13C-203ENST00000395896 PLA2R1Q13018 1463 aa4.23□□□□□ -1.73
VPS13C-203ENST00000395896 REREQ9P2R6 1566 aa4.23□□□□□ -1.73
VPS13C-203ENST00000395896 ALDH1L2Q3SY69 923 aa4.23□□□□□ -1.73
VPS13C-203ENST00000395896 TMEM2Q9UHN6 1383 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms