RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 L3MBTL2Q969R5 705 aa34.22■■■■□ 3.07
SHMT1-204ENST00000395682 MED1Q15648 1581 aaPredicted RBP34.21■■■■□ 3.07
SHMT1-204ENST00000395682 POGKQ9P215 609 aa34.21■■■■□ 3.07
SHMT1-204ENST00000395682 SAFB2Q14151 953 aaKnown RBP eCLIP34.2■■■■□ 3.07
SHMT1-204ENST00000395682 ORAI2Q96SN7 254 aa34.2■■■■□ 3.07
SHMT1-204ENST00000395682 AHDC1Q5TGY3 1603 aaPredicted RBP34.19■■■■□ 3.06
SHMT1-204ENST00000395682 COL16A1Q07092 1604 aaPredicted RBP34.17■■■■□ 3.06
SHMT1-204ENST00000395682 DDX17Q92841 729 aaKnown RBP34.17■■■■□ 3.06
SHMT1-204ENST00000395682 JCADQ9P266 1359 aa34.17■■■■□ 3.06
SHMT1-204ENST00000395682 CDC42BPGQ6DT37 1551 aa34.16■■■■□ 3.06
SHMT1-204ENST00000395682 DLC1Q96QB1 1528 aa34.15■■■■□ 3.06
SHMT1-204ENST00000395682 NUTM2FA1L443 756 aa34.15■■■■□ 3.06
SHMT1-204ENST00000395682 ESCO1Q5FWF5 840 aa34.14■■■■□ 3.06
SHMT1-204ENST00000395682 PHF23Q9BUL5 403 aaPredicted RBP34.11■■■■□ 3.05
SHMT1-204ENST00000395682 NBPF1Q3BBV0 1214 aa34.1■■■■□ 3.05
SHMT1-204ENST00000395682 LRRC59Q96AG4 307 aaKnown RBP34.08■■■■□ 3.05
SHMT1-204ENST00000395682 NHSL1Q5SYE7 1610 aa34.08■■■■□ 3.05
SHMT1-204ENST00000395682 ILDR2Q71H61 639 aa34.07■■■■□ 3.04
SHMT1-204ENST00000395682 HIRIP3Q9BW71 556 aaPredicted RBP34.04■■■■□ 3.04
SHMT1-204ENST00000395682 KIAA1210Q9ULL0 1709 aa34.04■■■■□ 3.04
SHMT1-204ENST00000395682 MINK1Q8N4C8 1332 aaPredicted RBP34.04■■■■□ 3.04
SHMT1-204ENST00000395682 SPATA31A6Q5VVP1 1343 aa34.03■■■■□ 3.04
SHMT1-204ENST00000395682 PCGF6Q9BYE7 350 aa34.02■■■■□ 3.04
SHMT1-204ENST00000395682 FOXO3O43524 673 aa34.01■■■■□ 3.03
SHMT1-204ENST00000395682 FMN2Q9NZ56 1722 aa34.01■■■■□ 3.03
SHMT1-204ENST00000395682 SOS2Q07890 1332 aaPredicted RBP34.01■■■■□ 3.03
SHMT1-204ENST00000395682 NPHP3Q7Z494 1330 aa33.99■■■■□ 3.03
SHMT1-204ENST00000395682 SHPRHQ149N8 1683 aa33.95■■■■□ 3.03
SHMT1-204ENST00000395682 NUTM2BA6NNL0 878 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-204ENST00000395682 NUTM2EB1AL46 878 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-204ENST00000395682 WASLO00401 505 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-204ENST00000395682 XPCQ01831 940 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-204ENST00000395682 NUTM2AQ8IVF1 878 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-204ENST00000395682 RGS17Q9UGC6 210 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-204ENST00000395682 ARHGEF28Q8N1W1 1705 aaKnown RBP33.93■■■■□ 3.02
SHMT1-204ENST00000395682 PHF8Q9UPP1 1060 aa33.93■■■■□ 3.02
SHMT1-204ENST00000395682 TONSLQ96HA7 1378 aa33.93■■■■□ 3.02
SHMT1-204ENST00000395682 ADGRB2O60241 1585 aa33.92■■■■□ 3.02
SHMT1-204ENST00000395682 PNPLA6Q8IY17 1366 aa33.91■■■■□ 3.02
SHMT1-204ENST00000395682 MEX3CQ5U5Q3 659 aaKnown RBP33.91■■■■□ 3.02
SHMT1-204ENST00000395682 NBPF8Q3BBV2 869 aa33.9■■■■□ 3.02
SHMT1-204ENST00000395682 LRP6O75581 1613 aa33.89■■■■□ 3.02
SHMT1-204ENST00000395682 RGPD8O14715 1765 aaPredicted RBP33.88■■■■□ 3.01
SHMT1-204ENST00000395682 ANKARQ7Z5J8 1434 aa33.87■■■■□ 3.01
SHMT1-204ENST00000395682 PXDNQ92626 1479 aa33.87■■■■□ 3.01
SHMT1-204ENST00000395682 EIF3AQ14152 1382 aaKnown RBP33.86■■■■□ 3.01
SHMT1-204ENST00000395682 KRT28Q7Z3Y7 464 aa33.86■■■■□ 3.01
SHMT1-204ENST00000395682 PMFBP1Q8TBY8 1022 aa33.85■■■■□ 3.01
SHMT1-204ENST00000395682 ROCK2O75116 1388 aaKnown RBP33.85■■■■□ 3.01
SHMT1-204ENST00000395682 PRR36Q9H6K5 1346 aa33.84■■■■□ 3.01
SHMT1-204ENST00000395682 CENPJQ9HC77 1338 aaPredicted RBP33.84■■■■□ 3.01
SHMT1-204ENST00000395682 CDK19Q9BWU1 502 aa33.84■■■■□ 3.01
SHMT1-204ENST00000395682 KIF1AQ12756 1690 aa33.84■■■■□ 3.01
SHMT1-204ENST00000395682 TRPM1Q7Z4N2 1603 aa33.83■■■■□ 3.01
SHMT1-204ENST00000395682 USP32Q8NFA0 1604 aa33.82■■■■□ 3
SHMT1-204ENST00000395682 PSME1Q06323 249 aa33.81■■■■□ 3
SHMT1-204ENST00000395682 TULP4Q9NRJ4 1543 aa33.8■■■■□ 3
SHMT1-204ENST00000395682 NUDT16Q96DE0 195 aaKnown RBP33.8■■■■□ 3
SHMT1-204ENST00000395682 POTEAQ6S8J7 498 aa33.78■■■■□ 3
SHMT1-204ENST00000395682 SPATA31A3Q5VYP0 1347 aa33.77■■■■□ 3
SHMT1-204ENST00000395682 ADAMTS2O95450 1211 aa33.74■■■□□ 2.99
SHMT1-204ENST00000395682 NGDNQ8NEJ9 315 aaKnown RBP33.72■■■□□ 2.99
SHMT1-204ENST00000395682 GPRASP1Q5JY77 1395 aa33.72■■■□□ 2.99
SHMT1-204ENST00000395682 ZNF772Q68DY9 489 aaPredicted RBP33.71■■■□□ 2.99
SHMT1-204ENST00000395682 C8orf37Q96NL8 207 aa33.71■■■□□ 2.99
SHMT1-204ENST00000395682 CARD11Q9BXL7 1154 aa33.71■■■□□ 2.99
SHMT1-204ENST00000395682 SOCS7O14512 581 aa33.7■■■□□ 2.99
SHMT1-204ENST00000395682 SRPK2P78362 688 aaKnown RBP33.7■■■□□ 2.99
SHMT1-204ENST00000395682 ATP7BP35670 1465 aa33.69■■■□□ 2.98
SHMT1-204ENST00000395682 CCDC61Q9Y6R9 512 aa33.69■■■□□ 2.98
SHMT1-204ENST00000395682 SBNO1A3KN83 1393 aa33.69■■■□□ 2.98
SHMT1-204ENST00000395682 COL22A1Q8NFW1 1626 aaPredicted RBP33.68■■■□□ 2.98
SHMT1-204ENST00000395682 LMOD2Q6P5Q4 547 aa33.68■■■□□ 2.98
SHMT1-204ENST00000395682 NGLY1Q96IV0 654 aa33.67■■■□□ 2.98
SHMT1-204ENST00000395682 CABP2Q9NPB3 220 aa33.67■■■□□ 2.98
SHMT1-204ENST00000395682 AFF2P51816 1311 aa33.67■■■□□ 2.98
SHMT1-204ENST00000395682 CLSPNQ9HAW4 1339 aa33.67■■■□□ 2.98
SHMT1-204ENST00000395682 TNS3Q68CZ2 1445 aa33.66■■■□□ 2.98
SHMT1-204ENST00000395682 QRICH2Q9H0J4 1663 aa33.65■■■□□ 2.98
SHMT1-204ENST00000395682 RALGAPBQ86X10 1494 aa33.64■■■□□ 2.98
SHMT1-204ENST00000395682 PLEKHG3A1L390 1219 aa33.62■■■□□ 2.97
SHMT1-204ENST00000395682 EVC2Q86UK5 1308 aa33.61■■■□□ 2.97
SHMT1-204ENST00000395682 PLEKHG5O94827 1062 aa33.61■■■□□ 2.97
SHMT1-204ENST00000395682 ITSN1Q15811 1721 aa33.6■■■□□ 2.97
SHMT1-204ENST00000395682 ARHGEF10O15013 1369 aa33.6■■■□□ 2.97
SHMT1-204ENST00000395682 CCER1Q8TC90 406 aaPredicted RBP33.59■■■□□ 2.97
SHMT1-204ENST00000395682 ACEP12821 1306 aa33.58■■■□□ 2.97
SHMT1-204ENST00000395682 PAK3O75914 559 aaPredicted RBP33.58■■■□□ 2.97
SHMT1-204ENST00000395682 CABLES1Q8TDN4 633 aa33.58■■■□□ 2.97
SHMT1-204ENST00000395682 TIMELESSQ9UNS1 1208 aa33.58■■■□□ 2.97
SHMT1-204ENST00000395682 HAP1P54257 671 aaPredicted RBP33.56■■■□□ 2.96
SHMT1-204ENST00000395682 POLR3AO14802 1390 aaPredicted RBP33.55■■■□□ 2.96
SHMT1-204ENST00000395682 QTRT2Q9H974 415 aaKnown RBP33.54■■■□□ 2.96
SHMT1-204ENST00000395682 PPIP5K1Q6PFW1 1433 aa33.53■■■□□ 2.96
SHMT1-204ENST00000395682 TOPAZ1Q8N9V7 1692 aa33.53■■■□□ 2.96
SHMT1-204ENST00000395682 FNBP4Q8N3X1 1017 aaPredicted RBP33.53■■■□□ 2.96
SHMT1-204ENST00000395682 CABP1Q9NZU7 370 aa33.53■■■□□ 2.96
SHMT1-204ENST00000395682 TRPM3Q9HCF6 1732 aaPredicted RBP33.53■■■□□ 2.96
SHMT1-204ENST00000395682 USP21Q9UK80 565 aa33.52■■■□□ 2.96
SHMT1-204ENST00000395682 RXRBP28702 533 aa33.51■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms