RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 PCGF6Q9BYE7 350 aa11.13□□□□□ -0.63
HMGB3P1-201ENST00000393368 KNDC1Q76NI1 1749 aa11.12□□□□□ -0.63
HMGB3P1-201ENST00000393368 BRINP3Q76B58 766 aa11.12□□□□□ -0.63
HMGB3P1-201ENST00000393368 DDX17Q92841 729 aaKnown RBP11.12□□□□□ -0.63
HMGB3P1-201ENST00000393368 L3MBTL2Q969R5 705 aa11.12□□□□□ -0.63
HMGB3P1-201ENST00000393368 TRAK1Q9UPV9 953 aa11.12□□□□□ -0.63
HMGB3P1-201ENST00000393368 NUTM2FA1L443 756 aa11.11□□□□□ -0.63
HMGB3P1-201ENST00000393368 PRAM1Q96QH2 718 aa11.11□□□□□ -0.63
HMGB3P1-201ENST00000393368 DISP3Q9P2K9 1392 aa11.1□□□□□ -0.63
HMGB3P1-201ENST00000393368 C1orf167Q5SNV9 1468 aa11.1□□□□□ -0.63
HMGB3P1-201ENST00000393368 PHLPP1O60346 1717 aa11.09□□□□□ -0.63
HMGB3P1-201ENST00000393368 CDC42BPGQ6DT37 1551 aa11.09□□□□□ -0.63
HMGB3P1-201ENST00000393368 NBPF1Q3BBV0 1214 aa11.09□□□□□ -0.63
HMGB3P1-201ENST00000393368 ORAI2Q96SN7 254 aa11.09□□□□□ -0.63
HMGB3P1-201ENST00000393368 COL16A1Q07092 1604 aaPredicted RBP11.09□□□□□ -0.63
HMGB3P1-201ENST00000393368 MED1Q15648 1581 aaPredicted RBP11.08□□□□□ -0.64
HMGB3P1-201ENST00000393368 HOXD11P31277 338 aaPredicted RBP11.08□□□□□ -0.64
HMGB3P1-201ENST00000393368 HIRIP3Q9BW71 556 aaPredicted RBP11.08□□□□□ -0.64
HMGB3P1-201ENST00000393368 POGKQ9P215 609 aa11.08□□□□□ -0.64
HMGB3P1-201ENST00000393368 DLC1Q96QB1 1528 aa11.08□□□□□ -0.64
HMGB3P1-201ENST00000393368 AHDC1Q5TGY3 1603 aaPredicted RBP11.07□□□□□ -0.64
HMGB3P1-201ENST00000393368 STAC3Q96MF2 364 aa11.07□□□□□ -0.64
HMGB3P1-201ENST00000393368 MINK1Q8N4C8 1332 aaPredicted RBP11.06□□□□□ -0.64
HMGB3P1-201ENST00000393368 ESCO1Q5FWF5 840 aa11.05□□□□□ -0.64
HMGB3P1-201ENST00000393368 SIRT1Q96EB6 747 aa11.05□□□□□ -0.64
HMGB3P1-201ENST00000393368 NHSL1Q5SYE7 1610 aa11.05□□□□□ -0.64
HMGB3P1-201ENST00000393368 ARHGEF28Q8N1W1 1705 aaKnown RBP11.04□□□□□ -0.64
HMGB3P1-201ENST00000393368 XPCQ01831 940 aaPredicted RBP11.04□□□□□ -0.64
HMGB3P1-201ENST00000393368 NBPF8Q3BBV2 869 aa11.04□□□□□ -0.64
HMGB3P1-201ENST00000393368 NCBP3Q53F19 620 aaKnown RBP11.04□□□□□ -0.64
HMGB3P1-201ENST00000393368 RNF216Q9NWF9 866 aaPredicted RBP11.04□□□□□ -0.64
HMGB3P1-201ENST00000393368 FMN2Q9NZ56 1722 aa11.04□□□□□ -0.64
HMGB3P1-201ENST00000393368 TONSLQ96HA7 1378 aa11.03□□□□□ -0.64
HMGB3P1-201ENST00000393368 JCADQ9P266 1359 aa11.03□□□□□ -0.64
HMGB3P1-201ENST00000393368 KIAA1210Q9ULL0 1709 aa11.03□□□□□ -0.64
HMGB3P1-201ENST00000393368 ADGRB2O60241 1585 aa11.02□□□□□ -0.65
HMGB3P1-201ENST00000393368 LRP6O75581 1613 aa11.02□□□□□ -0.65
HMGB3P1-201ENST00000393368 TRPM1Q7Z4N2 1603 aa11.02□□□□□ -0.65
HMGB3P1-201ENST00000393368 FOXO3O43524 673 aa11.01□□□□□ -0.65
HMGB3P1-201ENST00000393368 ILDR2Q71H61 639 aa11.01□□□□□ -0.65
HMGB3P1-201ENST00000393368 PRR36Q9H6K5 1346 aa11.01□□□□□ -0.65
HMGB3P1-201ENST00000393368 USP32Q8NFA0 1604 aa11.01□□□□□ -0.65
HMGB3P1-201ENST00000393368 ROCK2O75116 1388 aaKnown RBP11.01□□□□□ -0.65
HMGB3P1-201ENST00000393368 NUTM2BA6NNL0 878 aaPredicted RBP11□□□□□ -0.65
HMGB3P1-201ENST00000393368 NUTM2EB1AL46 878 aaPredicted RBP11□□□□□ -0.65
HMGB3P1-201ENST00000393368 NUTM2AQ8IVF1 878 aaPredicted RBP11□□□□□ -0.65
HMGB3P1-201ENST00000393368 PXDNQ92626 1479 aa11□□□□□ -0.65
HMGB3P1-201ENST00000393368 WASLO00401 505 aaPredicted RBP10.99□□□□□ -0.65
HMGB3P1-201ENST00000393368 PMFBP1Q8TBY8 1022 aa10.99□□□□□ -0.65
HMGB3P1-201ENST00000393368 SOS2Q07890 1332 aaPredicted RBP10.99□□□□□ -0.65
HMGB3P1-201ENST00000393368 PNPLA6Q8IY17 1366 aa10.99□□□□□ -0.65
HMGB3P1-201ENST00000393368 SHPRHQ149N8 1683 aa10.98□□□□□ -0.65
HMGB3P1-201ENST00000393368 LRRC59Q96AG4 307 aaKnown RBP10.98□□□□□ -0.65
HMGB3P1-201ENST00000393368 RGS17Q9UGC6 210 aaPredicted RBP10.98□□□□□ -0.65
HMGB3P1-201ENST00000393368 PHF8Q9UPP1 1060 aa10.98□□□□□ -0.65
HMGB3P1-201ENST00000393368 NPHP3Q7Z494 1330 aa10.98□□□□□ -0.65
HMGB3P1-201ENST00000393368 TULP4Q9NRJ4 1543 aa10.98□□□□□ -0.65
HMGB3P1-201ENST00000393368 RGPD8O14715 1765 aaPredicted RBP10.98□□□□□ -0.65
HMGB3P1-201ENST00000393368 CDK19Q9BWU1 502 aa10.97□□□□□ -0.65
HMGB3P1-201ENST00000393368 CENPJQ9HC77 1338 aaPredicted RBP10.97□□□□□ -0.65
HMGB3P1-201ENST00000393368 KIF1AQ12756 1690 aa10.96□□□□□ -0.65
HMGB3P1-201ENST00000393368 ATP7BP35670 1465 aa10.96□□□□□ -0.65
HMGB3P1-201ENST00000393368 RALGAPBQ86X10 1494 aa10.96□□□□□ -0.65
HMGB3P1-201ENST00000393368 ANKARQ7Z5J8 1434 aa10.96□□□□□ -0.65
HMGB3P1-201ENST00000393368 SPATA31A6Q5VVP1 1343 aa10.96□□□□□ -0.65
HMGB3P1-201ENST00000393368 PLEKHG5O94827 1062 aa10.96□□□□□ -0.65
HMGB3P1-201ENST00000393368 MEX3CQ5U5Q3 659 aaKnown RBP10.96□□□□□ -0.65
HMGB3P1-201ENST00000393368 QRICH2Q9H0J4 1663 aa10.95□□□□□ -0.66
HMGB3P1-201ENST00000393368 KRT28Q7Z3Y7 464 aa10.95□□□□□ -0.66
HMGB3P1-201ENST00000393368 CCER1Q8TC90 406 aaPredicted RBP10.95□□□□□ -0.66
HMGB3P1-201ENST00000393368 NUDT16Q96DE0 195 aaKnown RBP10.95□□□□□ -0.66
HMGB3P1-201ENST00000393368 CABP2Q9NPB3 220 aa10.95□□□□□ -0.66
HMGB3P1-201ENST00000393368 GPRASP1Q5JY77 1395 aa10.94□□□□□ -0.66
HMGB3P1-201ENST00000393368 ADAMTS2O95450 1211 aa10.94□□□□□ -0.66
HMGB3P1-201ENST00000393368 CARD11Q9BXL7 1154 aa10.94□□□□□ -0.66
HMGB3P1-201ENST00000393368 EIF3AQ14152 1382 aaKnown RBP10.93□□□□□ -0.66
HMGB3P1-201ENST00000393368 SRPK2P78362 688 aaKnown RBP10.93□□□□□ -0.66
HMGB3P1-201ENST00000393368 SPATA31A3Q5VYP0 1347 aa10.92□□□□□ -0.66
HMGB3P1-201ENST00000393368 NPM3O75607 178 aaKnown RBP10.92□□□□□ -0.66
HMGB3P1-201ENST00000393368 PSME1Q06323 249 aa10.92□□□□□ -0.66
HMGB3P1-201ENST00000393368 LMOD2Q6P5Q4 547 aa10.92□□□□□ -0.66
HMGB3P1-201ENST00000393368 POTEAQ6S8J7 498 aa10.92□□□□□ -0.66
HMGB3P1-201ENST00000393368 C8orf37Q96NL8 207 aa10.92□□□□□ -0.66
HMGB3P1-201ENST00000393368 TNS3Q68CZ2 1445 aa10.92□□□□□ -0.66
HMGB3P1-201ENST00000393368 NGDNQ8NEJ9 315 aaKnown RBP10.91□□□□□ -0.66
HMGB3P1-201ENST00000393368 TOPAZ1Q8N9V7 1692 aa10.91□□□□□ -0.66
HMGB3P1-201ENST00000393368 COL22A1Q8NFW1 1626 aaPredicted RBP10.91□□□□□ -0.66
HMGB3P1-201ENST00000393368 CABLES1Q8TDN4 633 aa10.9□□□□□ -0.66
HMGB3P1-201ENST00000393368 PPIP5K1Q6PFW1 1433 aa10.9□□□□□ -0.66
HMGB3P1-201ENST00000393368 ACEP12821 1306 aa10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 AFF2P51816 1311 aa10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 CLSPNQ9HAW4 1339 aa10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 DCAF8L1A6NGE4 600 aa10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 PAK3O75914 559 aaPredicted RBP10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 CCDC61Q9Y6R9 512 aa10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 ITSN1Q15811 1721 aa10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 TRPM3Q9HCF6 1732 aaPredicted RBP10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 SBNO1A3KN83 1393 aa10.89□□□□□ -0.67
HMGB3P1-201ENST00000393368 KCNA4P22459 653 aa10.88□□□□□ -0.67
HMGB3P1-201ENST00000393368 EVC2Q86UK5 1308 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms