RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 THEMISQ8N1K5 641 aaPredicted RBP18.48■□□□□ 0.55
NPHP4-201ENST00000378156 HSP90B1P14625 803 aaKnown RBP18.47■□□□□ 0.55
NPHP4-201ENST00000378156 TNNT3P45378 269 aaPredicted RBP18.47■□□□□ 0.55
NPHP4-201ENST00000378156 MAGI1Q96QZ7 1491 aaPredicted RBP18.47■□□□□ 0.55
NPHP4-201ENST00000378156 DDX11L8A8MPP1 907 aa18.47■□□□□ 0.55
NPHP4-201ENST00000378156 FRAT2O75474 233 aaPredicted RBP18.47■□□□□ 0.55
NPHP4-201ENST00000378156 DDX58O95786 925 aaKnown RBP18.47■□□□□ 0.55
NPHP4-201ENST00000378156 MSH5O43196 834 aa18.46■□□□□ 0.55
NPHP4-201ENST00000378156 RPGRIP1LQ68CZ1 1315 aa18.45■□□□□ 0.54
NPHP4-201ENST00000378156 GRIN2AQ12879 1464 aa18.45■□□□□ 0.54
NPHP4-201ENST00000378156 NLRP2Q9NX02 1062 aa18.45■□□□□ 0.54
NPHP4-201ENST00000378156 EXOSC9Q06265 439 aaKnown RBP18.44■□□□□ 0.54
NPHP4-201ENST00000378156 PDE3AQ14432 1141 aa18.44■□□□□ 0.54
NPHP4-201ENST00000378156 ABTB2Q8N961 1025 aa18.44■□□□□ 0.54
NPHP4-201ENST00000378156 C22orf23Q9BZE7 217 aa18.44■□□□□ 0.54
NPHP4-201ENST00000378156 TSR2Q969E8 191 aaKnown RBP18.44■□□□□ 0.54
NPHP4-201ENST00000378156 CDK19Q9BWU1 502 aa18.43■□□□□ 0.54
NPHP4-201ENST00000378156 CABP1Q9NZU7 370 aa18.43■□□□□ 0.54
NPHP4-201ENST00000378156 AAMPQ13685 434 aa18.43■□□□□ 0.54
NPHP4-201ENST00000378156 CCDC141Q6ZP82 1450 aa18.43■□□□□ 0.54
NPHP4-201ENST00000378156 PRKAR2BP31323 418 aa18.42■□□□□ 0.54
NPHP4-201ENST00000378156 PDZRN3Q9UPQ7 1066 aa18.42■□□□□ 0.54
NPHP4-201ENST00000378156 GPRASP1Q5JY77 1395 aa18.42■□□□□ 0.54
NPHP4-201ENST00000378156 TOMM22Q9NS69 142 aa18.42■□□□□ 0.54
NPHP4-201ENST00000378156 CHMP5Q9NZZ3 219 aa18.42■□□□□ 0.54
NPHP4-201ENST00000378156 DDX49Q9Y6V7 483 aaKnown RBP18.42■□□□□ 0.54
NPHP4-201ENST00000378156 AMER1Q5JTC6 1135 aaPredicted RBP18.42■□□□□ 0.54
NPHP4-201ENST00000378156 SKAP1Q86WV1 359 aa18.41■□□□□ 0.54
NPHP4-201ENST00000378156 ESCO1Q5FWF5 840 aa18.41■□□□□ 0.54
NPHP4-201ENST00000378156 SYTL4Q96C24 671 aaPredicted RBP18.41■□□□□ 0.54
NPHP4-201ENST00000378156 ZNF692Q9BU19 519 aaPredicted RBP18.41■□□□□ 0.54
NPHP4-201ENST00000378156 PROSER2Q86WR7 435 aaPredicted RBP18.41■□□□□ 0.54
NPHP4-201ENST00000378156 THOC2Q8NI27 1593 aaKnown RBP18.4■□□□□ 0.54
NPHP4-201ENST00000378156 DIAPH3Q9NSV4 1193 aa18.4■□□□□ 0.54
NPHP4-201ENST00000378156 G3V3G9 751 aa18.4■□□□□ 0.54
NPHP4-201ENST00000378156 DCAF8Q5TAQ9 597 aa18.4■□□□□ 0.54
NPHP4-201ENST00000378156 KIF3AQ9Y496 699 aa18.4■□□□□ 0.54
NPHP4-201ENST00000378156 CSPP1Q1MSJ5 1256 aa18.39■□□□□ 0.54
NPHP4-201ENST00000378156 ZNF608Q9ULD9 1512 aaPredicted RBP18.39■□□□□ 0.53
NPHP4-201ENST00000378156 REC8O95072 547 aa18.39■□□□□ 0.53
NPHP4-201ENST00000378156 C20orf194Q5TEA3 1177 aa18.39■□□□□ 0.53
NPHP4-201ENST00000378156 SLC26A8Q96RN1 970 aa18.39■□□□□ 0.53
NPHP4-201ENST00000378156 SLFN5Q08AF3 891 aa18.38■□□□□ 0.53
NPHP4-201ENST00000378156 IFIT2P09913 472 aaKnown RBP18.38■□□□□ 0.53
NPHP4-201ENST00000378156 FOXD4L6Q3SYB3 417 aaPredicted RBP18.38■□□□□ 0.53
NPHP4-201ENST00000378156 FOXD4L3Q6VB84 417 aaPredicted RBP18.38■□□□□ 0.53
NPHP4-201ENST00000378156 GAS2L2Q8NHY3 880 aa18.38■□□□□ 0.53
NPHP4-201ENST00000378156 TPM4P67936 248 aa18.38■□□□□ 0.53
NPHP4-201ENST00000378156 RUFY2Q8WXA3 655 aa18.38■□□□□ 0.53
NPHP4-201ENST00000378156 PHF14O94880 888 aa18.37■□□□□ 0.53
NPHP4-201ENST00000378156 G3BP1Q13283 466 aaKnown RBP eCLIP18.37■□□□□ 0.53
NPHP4-201ENST00000378156 CD109Q6YHK3 1445 aa18.36■□□□□ 0.53
NPHP4-201ENST00000378156 ARID3AQ99856 593 aa18.36■□□□□ 0.53
NPHP4-201ENST00000378156 LRRFIP1Q32MZ4 808 aaKnown RBP18.36■□□□□ 0.53
NPHP4-201ENST00000378156 CCDC34Q96HJ3 373 aa18.35■□□□□ 0.53
NPHP4-201ENST00000378156 UGGT2Q9NYU1 1516 aa18.35■□□□□ 0.53
NPHP4-201ENST00000378156 HSP90AB4PQ58FF6 505 aa18.34■□□□□ 0.53
NPHP4-201ENST00000378156 RTEL1-TNFRSF6BF6WH68 1400 aa18.34■□□□□ 0.53
NPHP4-201ENST00000378156 WWC1Q8IX03 1113 aa18.34■□□□□ 0.53
NPHP4-201ENST00000378156 SKOR2Q2VWA4 1001 aaPredicted RBP18.34■□□□□ 0.53
NPHP4-201ENST00000378156 NOB1Q9ULX3 412 aaKnown RBP18.34■□□□□ 0.53
NPHP4-201ENST00000378156 WDR63Q8IWG1 891 aa18.33■□□□□ 0.53
NPHP4-201ENST00000378156 ZKSCAN1P17029 563 aaPredicted RBP18.33■□□□□ 0.52
NPHP4-201ENST00000378156 RIC3Q7Z5B4 369 aa18.33■□□□□ 0.52
NPHP4-201ENST00000378156 GOLGA6L1Q8N7Z2 621 aa18.33■□□□□ 0.52
NPHP4-201ENST00000378156 AIMP1Q12904 312 aaKnown RBP18.32■□□□□ 0.52
NPHP4-201ENST00000378156 SULT6B1Q6IMI4 303 aa18.32■□□□□ 0.52
NPHP4-201ENST00000378156 ATAD2Q6PL18 1390 aa18.32■□□□□ 0.52
NPHP4-201ENST00000378156 ANKLE2Q86XL3 938 aa18.32■□□□□ 0.52
NPHP4-201ENST00000378156 C1orf115Q9H7X2 142 aa18.32■□□□□ 0.52
NPHP4-201ENST00000378156 GPATCH8Q9UKJ3 1502 aaKnown RBP18.32■□□□□ 0.52
NPHP4-201ENST00000378156 PLEKHO1Q53GL0 409 aaPredicted RBP18.31■□□□□ 0.52
NPHP4-201ENST00000378156 CHMP4CQ96CF2 233 aa18.31■□□□□ 0.52
NPHP4-201ENST00000378156 UBTFL1P0CB47 393 aaPredicted RBP18.31■□□□□ 0.52
NPHP4-201ENST00000378156 TWISTNBQ3B726 338 aaPredicted RBP18.3■□□□□ 0.52
NPHP4-201ENST00000378156 VSIG10Q8N0Z9 540 aa18.3■□□□□ 0.52
NPHP4-201ENST00000378156 CCDC30Q5VVM6 783 aa18.3■□□□□ 0.52
NPHP4-201ENST00000378156 ANO2Q9NQ90 1003 aa18.3■□□□□ 0.52
NPHP4-201ENST00000378156 KIF14Q15058 1648 aa18.3■□□□□ 0.52
NPHP4-201ENST00000378156 NSD3Q9BZ95 1437 aa18.3■□□□□ 0.52
NPHP4-201ENST00000378156 POGZQ7Z3K3 1410 aa18.3■□□□□ 0.52
NPHP4-201ENST00000378156 SF3A1Q15459 793 aaKnown RBP18.29■□□□□ 0.52
NPHP4-201ENST00000378156 CCDC61Q9Y6R9 512 aa18.29■□□□□ 0.52
NPHP4-201ENST00000378156 INTS3Q68E01 1043 aaKnown RBP18.29■□□□□ 0.52
NPHP4-201ENST00000378156 FAM184AQ8NB25 1140 aa18.29■□□□□ 0.52
NPHP4-201ENST00000378156 DISP3Q9P2K9 1392 aa18.28■□□□□ 0.52
NPHP4-201ENST00000378156 MVPQ14764 893 aaKnown RBP18.28■□□□□ 0.52
NPHP4-201ENST00000378156 ATP6V1DQ9Y5K8 247 aa18.28■□□□□ 0.52
NPHP4-201ENST00000378156 ADGRL1O94910 1474 aa18.28■□□□□ 0.52
NPHP4-201ENST00000378156 GNAI3P08754 354 aa18.28■□□□□ 0.52
NPHP4-201ENST00000378156 H3BQV1 296 aa18.28■□□□□ 0.52
NPHP4-201ENST00000378156 IFFO2Q5TF58 517 aa18.28■□□□□ 0.52
NPHP4-201ENST00000378156 ATF7IPQ6VMQ6 1270 aa18.28■□□□□ 0.52
NPHP4-201ENST00000378156 CDC45O75419 566 aa18.27■□□□□ 0.51
NPHP4-201ENST00000378156 ADGRF5Q8IZF2 1346 aa18.26■□□□□ 0.51
NPHP4-201ENST00000378156 ERC2O15083 957 aa18.26■□□□□ 0.51
NPHP4-201ENST00000378156 RASSF8Q8NHQ8 419 aa18.26■□□□□ 0.51
NPHP4-201ENST00000378156 BRPF3Q9ULD4 1205 aa18.26■□□□□ 0.51
NPHP4-201ENST00000378156 DUSP27Q5VZP5 1158 aa18.25■□□□□ 0.51
NPHP4-201ENST00000378156 CPLX2Q6PUV4 134 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms