RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 ERBB4Q15303 1308 aa6.98□□□□□ -1.29
ATG4A-204ENST00000372246 RLBP1P12271 317 aa6.97□□□□□ -1.29
ATG4A-204ENST00000372246 PDIA4P13667 645 aaKnown RBP6.97□□□□□ -1.29
ATG4A-204ENST00000372246 TAOK2Q9UL54 1235 aa6.97□□□□□ -1.29
ATG4A-204ENST00000372246 DNMT1P26358 1616 aaKnown RBP6.97□□□□□ -1.29
ATG4A-204ENST00000372246 CANXP27824 592 aaKnown RBP6.97□□□□□ -1.29
ATG4A-204ENST00000372246 PCDHB15Q9Y5E8 787 aa6.97□□□□□ -1.29
ATG4A-204ENST00000372246 NUP153P49790 1475 aaKnown RBP6.97□□□□□ -1.29
ATG4A-204ENST00000372246 STK25O00506 426 aa6.96□□□□□ -1.29
ATG4A-204ENST00000372246 SLFN5Q08AF3 891 aa6.96□□□□□ -1.29
ATG4A-204ENST00000372246 MS4A4AQ96JQ5 239 aa6.96□□□□□ -1.29
ATG4A-204ENST00000372246 ANTXR1Q9H6X2 564 aa6.96□□□□□ -1.29
ATG4A-204ENST00000372246 PLB1Q6P1J6 1458 aa6.96□□□□□ -1.29
ATG4A-204ENST00000372246 WDR62O43379 1518 aa6.96□□□□□ -1.29
ATG4A-204ENST00000372246 STK24Q9Y6E0 443 aa6.96□□□□□ -1.3
ATG4A-204ENST00000372246 BLMP54132 1417 aaPredicted RBP6.96□□□□□ -1.3
ATG4A-204ENST00000372246 ZNF608Q9ULD9 1512 aaPredicted RBP6.96□□□□□ -1.3
ATG4A-204ENST00000372246 SOX12O15370 315 aa6.95□□□□□ -1.3
ATG4A-204ENST00000372246 ZNF521Q96K83 1311 aa6.95□□□□□ -1.3
ATG4A-204ENST00000372246 MFAP1P55081 439 aaKnown RBP6.95□□□□□ -1.3
ATG4A-204ENST00000372246 PHF8Q9UPP1 1060 aa6.95□□□□□ -1.3
ATG4A-204ENST00000372246 KNSTRNQ9Y448 316 aa6.95□□□□□ -1.3
ATG4A-204ENST00000372246 MAGI2Q86UL8 1455 aa6.94□□□□□ -1.3
ATG4A-204ENST00000372246 UHRF1BP1Q6BDS2 1440 aa6.94□□□□□ -1.3
ATG4A-204ENST00000372246 ANKRD30AQ9BXX3 1397 aa6.94□□□□□ -1.3
ATG4A-204ENST00000372246 ZBTB7CA1YPR0 619 aa6.94□□□□□ -1.3
ATG4A-204ENST00000372246 PNNQ9H307 717 aaKnown RBP6.94□□□□□ -1.3
ATG4A-204ENST00000372246 ZMYM4Q5VZL5 1548 aa6.94□□□□□ -1.3
ATG4A-204ENST00000372246 FBXO22Q8NEZ5 403 aa6.94□□□□□ -1.3
ATG4A-204ENST00000372246 L3MBTL3Q96JM7 780 aaPredicted RBP6.94□□□□□ -1.3
ATG4A-204ENST00000372246 PDZRN3Q9UPQ7 1066 aa6.94□□□□□ -1.3
ATG4A-204ENST00000372246 GPATCH8Q9UKJ3 1502 aaKnown RBP6.94□□□□□ -1.3
ATG4A-204ENST00000372246 GOLGA6L3A6NEY3 463 aa6.93□□□□□ -1.3
ATG4A-204ENST00000372246 PDE4CQ08493 712 aa6.93□□□□□ -1.3
ATG4A-204ENST00000372246 GAS2L3Q86XJ1 694 aa6.93□□□□□ -1.3
ATG4A-204ENST00000372246 AMER1Q5JTC6 1135 aaPredicted RBP6.93□□□□□ -1.3
ATG4A-204ENST00000372246 MFRPQ9BY79 579 aa6.93□□□□□ -1.3
ATG4A-204ENST00000372246 PRAG1Q86YV5 1406 aa6.93□□□□□ -1.3
ATG4A-204ENST00000372246 TSPY4P0CV99 314 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 TSPY10P0CW01 314 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 TMF1P82094 1093 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 HSP90AA2PQ14568 343 aaPredicted RBP6.92□□□□□ -1.3
ATG4A-204ENST00000372246 SLAIN1Q8ND83 568 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 TMEM121BQ9BXQ6 578 aaPredicted RBP6.92□□□□□ -1.3
ATG4A-204ENST00000372246 ERBINQ96RT1 1412 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 IQGAP2Q13576 1575 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 E9PCH4 1651 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 NLRP1Q9C000 1473 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 TRAK2O60296 914 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 MCM4P33991 863 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 LCE2DQ5TA82 110 aaPredicted RBP6.92□□□□□ -1.3
ATG4A-204ENST00000372246 BOLA1Q9Y3E2 137 aa6.92□□□□□ -1.3
ATG4A-204ENST00000372246 RBM10P98175 930 aaKnown RBP6.91□□□□□ -1.3
ATG4A-204ENST00000372246 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.91□□□□□ -1.3
ATG4A-204ENST00000372246 C9orf84Q5VXU9 1444 aa6.91□□□□□ -1.3
ATG4A-204ENST00000372246 TBC1D32Q96NH3 1257 aa6.91□□□□□ -1.3
ATG4A-204ENST00000372246 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.91□□□□□ -1.3
ATG4A-204ENST00000372246 A2MP01023 1474 aa6.91□□□□□ -1.3
ATG4A-204ENST00000372246 CCDC144AA2RUR9 1427 aa6.9□□□□□ -1.3
ATG4A-204ENST00000372246 BECN1Q14457 450 aa6.9□□□□□ -1.3
ATG4A-204ENST00000372246 HS6ST3Q8IZP7 471 aa6.9□□□□□ -1.3
ATG4A-204ENST00000372246 DISP1Q96F81 1524 aa6.9□□□□□ -1.3
ATG4A-204ENST00000372246 PLA2R1Q13018 1463 aa6.9□□□□□ -1.3
ATG4A-204ENST00000372246 COL17A1Q9UMD9 1497 aaPredicted RBP6.9□□□□□ -1.3
ATG4A-204ENST00000372246 CENPJQ9HC77 1338 aaPredicted RBP6.9□□□□□ -1.3
ATG4A-204ENST00000372246 HSP90AA1P07900 732 aaKnown RBP6.9□□□□□ -1.31
ATG4A-204ENST00000372246 CHAMP1Q96JM3 812 aa6.9□□□□□ -1.31
ATG4A-204ENST00000372246 FSD2A1L4K1 749 aa6.89□□□□□ -1.31
ATG4A-204ENST00000372246 WWC1Q8IX03 1113 aa6.89□□□□□ -1.31
ATG4A-204ENST00000372246 TRMT2AQ8IZ69 625 aaKnown RBP6.89□□□□□ -1.31
ATG4A-204ENST00000372246 TSR2Q969E8 191 aaKnown RBP6.89□□□□□ -1.31
ATG4A-204ENST00000372246 CARD14Q9BXL6 1004 aa6.89□□□□□ -1.31
ATG4A-204ENST00000372246 KDM5DQ9BY66 1539 aa6.89□□□□□ -1.31
ATG4A-204ENST00000372246 CD2BP2O95400 341 aaKnown RBP6.89□□□□□ -1.31
ATG4A-204ENST00000372246 NLRP6P59044 892 aa6.89□□□□□ -1.31
ATG4A-204ENST00000372246 FGD1P98174 961 aa6.89□□□□□ -1.31
ATG4A-204ENST00000372246 C3orf67Q6ZVT6 689 aa6.89□□□□□ -1.31
ATG4A-204ENST00000372246 TROQ12816 1431 aaPredicted RBP6.89□□□□□ -1.31
ATG4A-204ENST00000372246 L1TD1Q5T7N2 865 aaKnown RBP6.88□□□□□ -1.31
ATG4A-204ENST00000372246 NKTRP30414 1462 aaKnown RBP6.88□□□□□ -1.31
ATG4A-204ENST00000372246 WDR7Q9Y4E6 1490 aa6.88□□□□□ -1.31
ATG4A-204ENST00000372246 EIF3AQ14152 1382 aaKnown RBP6.88□□□□□ -1.31
ATG4A-204ENST00000372246 PLEKHD1A6NEE1 506 aa6.88□□□□□ -1.31
ATG4A-204ENST00000372246 CLCN1P35523 988 aa6.88□□□□□ -1.31
ATG4A-204ENST00000372246 MICALL2Q8IY33 904 aa6.88□□□□□ -1.31
ATG4A-204ENST00000372246 GRPEL1Q9HAV7 217 aa6.88□□□□□ -1.31
ATG4A-204ENST00000372246 ESPNB1AK53 854 aa6.87□□□□□ -1.31
ATG4A-204ENST00000372246 RARSP54136 660 aaKnown RBP6.87□□□□□ -1.31
ATG4A-204ENST00000372246 C22orf23Q9BZE7 217 aa6.87□□□□□ -1.31
ATG4A-204ENST00000372246 CHGAP10645 457 aaKnown RBP6.87□□□□□ -1.31
ATG4A-204ENST00000372246 HOMEZQ8IX15 550 aa6.87□□□□□ -1.31
ATG4A-204ENST00000372246 JARID2Q92833 1246 aaPredicted RBP6.87□□□□□ -1.31
ATG4A-204ENST00000372246 KIF21AQ7Z4S6 1674 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 CEP170Q5SW79 1584 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 E9PSI1 815 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 MPNDQ8N594 471 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 MYH16Q9H6N6 1097 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 UPF2Q9HAU5 1272 aaKnown RBP6.86□□□□□ -1.31
ATG4A-204ENST00000372246 TRPM1Q7Z4N2 1603 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 TCP11L2Q8N4U5 519 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms