RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 BRICD5Q6PL45 260 aa10.59□□□□□ -0.71
RNU4-28P-201ENST00000364739 FMNL1O95466 1100 aaPredicted RBP10.58□□□□□ -0.72
RNU4-28P-201ENST00000364739 S1PR4O95977 384 aa10.58□□□□□ -0.72
RNU4-28P-201ENST00000364739 FDX1P10109 184 aa10.58□□□□□ -0.72
RNU4-28P-201ENST00000364739 PDZRN3Q9UPQ7 1066 aa10.58□□□□□ -0.72
RNU4-28P-201ENST00000364739 ADH1BP00325 375 aa10.57□□□□□ -0.72
RNU4-28P-201ENST00000364739 FAM160A2Q8N612 972 aaPredicted RBP10.57□□□□□ -0.72
RNU4-28P-201ENST00000364739 PCDHB15Q9Y5E8 787 aa10.57□□□□□ -0.72
RNU4-28P-201ENST00000364739 PLEKHG3A1L390 1219 aa10.56□□□□□ -0.72
RNU4-28P-201ENST00000364739 IL27Q8NEV9 243 aa10.56□□□□□ -0.72
RNU4-28P-201ENST00000364739 PRDM9Q9NQV7 894 aa10.56□□□□□ -0.72
RNU4-28P-201ENST00000364739 CSPP1Q1MSJ5 1256 aa10.55□□□□□ -0.72
RNU4-28P-201ENST00000364739 MYSM1Q5VVJ2 828 aa10.55□□□□□ -0.72
RNU4-28P-201ENST00000364739 RIC3Q7Z5B4 369 aa10.55□□□□□ -0.72
RNU4-28P-201ENST00000364739 SLC6A16Q9GZN6 736 aa10.55□□□□□ -0.72
RNU4-28P-201ENST00000364739 POLR3EQ9NVU0 708 aa10.55□□□□□ -0.72
RNU4-28P-201ENST00000364739 LIMD1Q9UGP4 676 aa10.54□□□□□ -0.72
RNU4-28P-201ENST00000364739 RNF223E7ERA6 249 aa10.53□□□□□ -0.72
RNU4-28P-201ENST00000364739 C6orf229H3BNL8 230 aa10.53□□□□□ -0.72
RNU4-28P-201ENST00000364739 Q3C1V9 767 aa10.53□□□□□ -0.72
RNU4-28P-201ENST00000364739 RSBN1LQ6PCB5 846 aaPredicted RBP10.53□□□□□ -0.72
RNU4-28P-201ENST00000364739 SALL2Q9Y467 1007 aaPredicted RBP10.53□□□□□ -0.72
RNU4-28P-201ENST00000364739 SPTLC1O15269 473 aa10.51□□□□□ -0.73
RNU4-28P-201ENST00000364739 DIXDC1Q155Q3 683 aa10.51□□□□□ -0.73
RNU4-28P-201ENST00000364739 USB1Q9BQ65 265 aaKnown RBP10.51□□□□□ -0.73
RNU4-28P-201ENST00000364739 ZNF787Q6DD87 383 aa10.5□□□□□ -0.73
RNU4-28P-201ENST00000364739 CABLES1Q8TDN4 633 aa10.5□□□□□ -0.73
RNU4-28P-201ENST00000364739 DDRGK1Q96HY6 314 aa10.5□□□□□ -0.73
RNU4-28P-201ENST00000364739 QPCTQ16769 361 aa10.48□□□□□ -0.73
RNU4-28P-201ENST00000364739 PROCA1Q8NCQ7 364 aaPredicted RBP10.48□□□□□ -0.73
RNU4-28P-201ENST00000364739 ATP1B4Q9UN42 357 aaPredicted RBP10.48□□□□□ -0.73
RNU4-28P-201ENST00000364739 HRCP23327 699 aa10.47□□□□□ -0.73
RNU4-28P-201ENST00000364739 SLC19A1P41440 591 aa10.47□□□□□ -0.73
RNU4-28P-201ENST00000364739 RSPH6AQ9H0K4 717 aa10.47□□□□□ -0.73
RNU4-28P-201ENST00000364739 CLK2P49760 499 aaKnown RBP10.46□□□□□ -0.73
RNU4-28P-201ENST00000364739 MTMR2Q13614 643 aa10.46□□□□□ -0.73
RNU4-28P-201ENST00000364739 MSS51Q4VC12 460 aa10.46□□□□□ -0.73
RNU4-28P-201ENST00000364739 PLA2G2CQ5R387 149 aa10.46□□□□□ -0.73
RNU4-28P-201ENST00000364739 FBXO31Q5XUX0 539 aaPredicted RBP10.45□□□□□ -0.74
RNU4-28P-201ENST00000364739 TRIM67Q6ZTA4 783 aa10.45□□□□□ -0.74
RNU4-28P-201ENST00000364739 RETREG3Q86VR2 466 aa10.45□□□□□ -0.74
RNU4-28P-201ENST00000364739 ANKLE1Q8NAG6 615 aa10.45□□□□□ -0.74
RNU4-28P-201ENST00000364739 EMID1Q96A84 441 aaPredicted RBP10.45□□□□□ -0.74
RNU4-28P-201ENST00000364739 FCF1Q9Y324 198 aaKnown RBP10.45□□□□□ -0.74
RNU4-28P-201ENST00000364739 GJA5P36382 358 aa10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 PRR20EP86478 221 aa10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 PRR20CP86479 221 aa10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 PRR20DP86480 221 aa10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 PRR20BP86481 221 aa10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 PRR20AP86496 221 aa10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 SKIV2LQ15477 1246 aaKnown RBP10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 PRR7Q8TB68 274 aa10.44□□□□□ -0.74
RNU4-28P-201ENST00000364739 NUTM2BA6NNL0 878 aaPredicted RBP10.43□□□□□ -0.74
RNU4-28P-201ENST00000364739 NUTM2EB1AL46 878 aaPredicted RBP10.43□□□□□ -0.74
RNU4-28P-201ENST00000364739 RTL5Q5HYW3 569 aaPredicted RBP10.43□□□□□ -0.74
RNU4-28P-201ENST00000364739 NUTM2DQ5VT03 806 aaPredicted RBP10.43□□□□□ -0.74
RNU4-28P-201ENST00000364739 SPRYD7Q5W111 196 aa10.43□□□□□ -0.74
RNU4-28P-201ENST00000364739 ZNF598Q86UK7 904 aaKnown RBP10.43□□□□□ -0.74
RNU4-28P-201ENST00000364739 NUTM2AQ8IVF1 878 aaPredicted RBP10.43□□□□□ -0.74
RNU4-28P-201ENST00000364739 CFAP99D6REC4 459 aa10.42□□□□□ -0.74
RNU4-28P-201ENST00000364739 MMP16P51512 607 aa10.42□□□□□ -0.74
RNU4-28P-201ENST00000364739 SH3D19Q5HYK7 790 aa10.42□□□□□ -0.74
RNU4-28P-201ENST00000364739 LIAT1Q6ZQX7 453 aa10.42□□□□□ -0.74
RNU4-28P-201ENST00000364739 ZBTB3Q9H5J0 574 aa10.42□□□□□ -0.74
RNU4-28P-201ENST00000364739 LILRB3O75022 631 aa10.41□□□□□ -0.74
RNU4-28P-201ENST00000364739 DGAT1O75907 488 aa10.41□□□□□ -0.74
RNU4-28P-201ENST00000364739 DXOO77932 396 aaKnown RBP10.41□□□□□ -0.74
RNU4-28P-201ENST00000364739 CCDC24Q8N4L8 307 aa10.41□□□□□ -0.74
RNU4-28P-201ENST00000364739 JUNDP17535 347 aa10.4□□□□□ -0.74
RNU4-28P-201ENST00000364739 PKDCCQ504Y2 493 aa10.4□□□□□ -0.74
RNU4-28P-201ENST00000364739 TSC1Q92574 1164 aa10.4□□□□□ -0.74
RNU4-28P-201ENST00000364739 PRPF38BQ5VTL8 546 aaKnown RBP10.39□□□□□ -0.75
RNU4-28P-201ENST00000364739 SPDYE5A6NIY4 337 aa10.38□□□□□ -0.75
RNU4-28P-201ENST00000364739 ZNF775Q96BV0 537 aaPredicted RBP10.38□□□□□ -0.75
RNU4-28P-201ENST00000364739 MYT1Q01538 1121 aa10.37□□□□□ -0.75
RNU4-28P-201ENST00000364739 TUSC1Q2TAM9 212 aa10.37□□□□□ -0.75
RNU4-28P-201ENST00000364739 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.37□□□□□ -0.75
RNU4-28P-201ENST00000364739 ZNF697Q5TEC3 545 aa10.36□□□□□ -0.75
RNU4-28P-201ENST00000364739 PER1O15534 1290 aaPredicted RBP10.35□□□□□ -0.75
RNU4-28P-201ENST00000364739 PTCRAQ6ISU1 281 aaPredicted RBP10.35□□□□□ -0.75
RNU4-28P-201ENST00000364739 NUDT12Q9BQG2 462 aa10.35□□□□□ -0.75
RNU4-28P-201ENST00000364739 GDF9O60383 454 aa10.33□□□□□ -0.76
RNU4-28P-201ENST00000364739 PCMTD1Q96MG8 357 aaPredicted RBP10.33□□□□□ -0.76
RNU4-28P-201ENST00000364739 CTDSPL2Q05D32 466 aa10.32□□□□□ -0.76
RNU4-28P-201ENST00000364739 FAM187AA6NFU0 413 aa10.31□□□□□ -0.76
RNU4-28P-201ENST00000364739 ZBTB24O43167 697 aaPredicted RBP10.31□□□□□ -0.76
RNU4-28P-201ENST00000364739 DESI1Q6ICB0 168 aa10.31□□□□□ -0.76
RNU4-28P-201ENST00000364739 LYPD8Q6UX82 237 aa10.31□□□□□ -0.76
RNU4-28P-201ENST00000364739 GOPCQ9HD26 462 aa10.31□□□□□ -0.76
RNU4-28P-201ENST00000364739 CCNYL3P0C7X3 344 aa10.3□□□□□ -0.76
RNU4-28P-201ENST00000364739 PTPRNQ16849 979 aa10.3□□□□□ -0.76
RNU4-28P-201ENST00000364739 EVA1BQ9NVM1 165 aa10.29□□□□□ -0.76
RNU4-28P-201ENST00000364739 AP1G2O75843 785 aa10.28□□□□□ -0.76
RNU4-28P-201ENST00000364739 CTHP32929 405 aa10.28□□□□□ -0.76
RNU4-28P-201ENST00000364739 PPP2R2DQ66LE6 453 aa10.28□□□□□ -0.76
RNU4-28P-201ENST00000364739 MAP10Q9P2G4 905 aa10.28□□□□□ -0.76
RNU4-28P-201ENST00000364739 TNFRSF10AO00220 468 aa10.27□□□□□ -0.77
RNU4-28P-201ENST00000364739 CD2BP2O95400 341 aaKnown RBP10.27□□□□□ -0.77
RNU4-28P-201ENST00000364739 RFC5P40937 340 aa10.27□□□□□ -0.77
RNU4-28P-201ENST00000364739 RPIAP49247 311 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms