RNA–Protein interactions for RNA: ENST00000348495.10

SSBP4-202, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP4, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-202ENST00000348495 SAFB2Q14151 953 aaKnown RBP eCLIP37.8■■■■□ 3.641e-6■■■■□ 20.5
SSBP4-202ENST00000348495 DMRT2Q9Y5R5 561 aa37.79■■■■□ 3.64
SSBP4-202ENST00000348495 NKTRP30414 1462 aaKnown RBP37.75■■■■□ 3.63
SSBP4-202ENST00000348495 TULP4Q9NRJ4 1543 aa37.75■■■■□ 3.63
SSBP4-202ENST00000348495 STRCP1A6NGW2 1772 aa37.74■■■■□ 3.63
SSBP4-202ENST00000348495 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.73■■■■□ 3.63
SSBP4-202ENST00000348495 MINK1Q8N4C8 1332 aaPredicted RBP37.73■■■■□ 3.63
SSBP4-202ENST00000348495 ADGRB2O60241 1585 aa37.7■■■■□ 3.63
SSBP4-202ENST00000348495 EVC2Q86UK5 1308 aa37.68■■■■□ 3.62
SSBP4-202ENST00000348495 CDCA8Q53HL2 280 aa37.68■■■■□ 3.62
SSBP4-202ENST00000348495 PUS7Q96PZ0 661 aaKnown RBP37.64■■■■□ 3.62
SSBP4-202ENST00000348495 ZNF335Q9H4Z2 1342 aaPredicted RBP37.61■■■■□ 3.61
SSBP4-202ENST00000348495 NALCNQ8IZF0 1738 aa37.59■■■■□ 3.61
SSBP4-202ENST00000348495 WASLO00401 505 aaPredicted RBP37.58■■■■□ 3.61
SSBP4-202ENST00000348495 PROSER2Q86WR7 435 aaPredicted RBP37.58■■■■□ 3.61
SSBP4-202ENST00000348495 POLR3GLQ9BT43 218 aa37.58■■■■□ 3.61
SSBP4-202ENST00000348495 CDK19Q9BWU1 502 aa37.58■■■■□ 3.61
SSBP4-202ENST00000348495 ADGRL3Q9HAR2 1447 aa37.56■■■■□ 3.6
SSBP4-202ENST00000348495 DDX10Q13206 875 aaKnown RBP37.56■■■■□ 3.6
SSBP4-202ENST00000348495 RBM33Q96EV2 1170 aaKnown RBP37.55■■■■□ 3.6
SSBP4-202ENST00000348495 CABP2Q9NPB3 220 aa37.55■■■■□ 3.6
SSBP4-202ENST00000348495 NCOA3Q9Y6Q9 1424 aa37.54■■■■□ 3.6
SSBP4-202ENST00000348495 MYOM1P52179 1685 aa37.53■■■■□ 3.6
SSBP4-202ENST00000348495 SRPK2P78362 688 aaKnown RBP37.53■■■■□ 3.6
SSBP4-202ENST00000348495 TMEM94Q12767 1356 aa37.52■■■■□ 3.6
SSBP4-202ENST00000348495 CDC42BPGQ6DT37 1551 aa37.52■■■■□ 3.6
SSBP4-202ENST00000348495 LRRC7Q96NW7 1537 aa37.5■■■■□ 3.59
SSBP4-202ENST00000348495 ATAD2Q6PL18 1390 aa37.49■■■■□ 3.59
SSBP4-202ENST00000348495 XIRP1Q702N8 1843 aaKnown RBP37.46■■■■□ 3.59
SSBP4-202ENST00000348495 ATP7BP35670 1465 aa37.44■■■■□ 3.58
SSBP4-202ENST00000348495 FMN2Q9NZ56 1722 aa37.44■■■■□ 3.58
SSBP4-202ENST00000348495 PRR36Q9H6K5 1346 aa37.42■■■■□ 3.58
SSBP4-202ENST00000348495 NINLQ9Y2I6 1382 aa37.41■■■■□ 3.58
SSBP4-202ENST00000348495 USP32Q8NFA0 1604 aa37.41■■■■□ 3.58
SSBP4-202ENST00000348495 C14orf37Q86TY3 774 aa37.41■■■■□ 3.58
SSBP4-202ENST00000348495 C19orf44Q9H6X5 657 aa37.41■■■■□ 3.58
SSBP4-202ENST00000348495 LTBP4Q8N2S1 1624 aa37.41■■■■□ 3.58
SSBP4-202ENST00000348495 DIEXFQ68CQ4 756 aaKnown RBP37.4■■■■□ 3.58
SSBP4-202ENST00000348495 NUDT16Q96DE0 195 aaKnown RBP37.4■■■■□ 3.58
SSBP4-202ENST00000348495 ANKARQ7Z5J8 1434 aa37.38■■■■□ 3.57
SSBP4-202ENST00000348495 SLC12A5Q9H2X9 1139 aa37.38■■■■□ 3.57
SSBP4-202ENST00000348495 DCCP43146 1447 aa37.37■■■■□ 3.57
SSBP4-202ENST00000348495 TOPAZ1Q8N9V7 1692 aa37.37■■■■□ 3.57
SSBP4-202ENST00000348495 CCDC61Q9Y6R9 512 aa37.36■■■■□ 3.57
SSBP4-202ENST00000348495 TMC1Q8TDI8 760 aa37.35■■■■□ 3.57
SSBP4-202ENST00000348495 PANK3Q9H999 370 aa37.34■■■■□ 3.57
SSBP4-202ENST00000348495 PPIP5K1Q6PFW1 1433 aa37.32■■■■□ 3.56
SSBP4-202ENST00000348495 NUTM2FA1L443 756 aa37.31■■■■□ 3.56
SSBP4-202ENST00000348495 CABP1Q9NZU7 370 aa37.31■■■■□ 3.56
SSBP4-202ENST00000348495 MSH6P52701 1360 aa37.31■■■■□ 3.56
SSBP4-202ENST00000348495 CD163L1Q9NR16 1453 aa37.3■■■■□ 3.56
SSBP4-202ENST00000348495 RGPD8O14715 1765 aaPredicted RBP37.29■■■■□ 3.56
SSBP4-202ENST00000348495 ITSN1Q15811 1721 aa37.29■■■■□ 3.56
SSBP4-202ENST00000348495 ANKRD36BQ8N2N9 1353 aa37.28■■■■□ 3.56
SSBP4-202ENST00000348495 PER1O15534 1290 aaPredicted RBP37.27■■■■□ 3.56
SSBP4-202ENST00000348495 PLEKHG3A1L390 1219 aa37.24■■■■□ 3.55
SSBP4-202ENST00000348495 ATF3P18847 181 aa37.24■■■■□ 3.55
SSBP4-202ENST00000348495 CADPS2Q86UW7 1296 aa37.23■■■■□ 3.55
SSBP4-202ENST00000348495 A0A1W2PP64 1363 aa37.23■■■■□ 3.55
SSBP4-202ENST00000348495 CARD14Q9BXL6 1004 aa37.22■■■■□ 3.55
SSBP4-202ENST00000348495 MST1RQ04912 1400 aa37.22■■■■□ 3.55
SSBP4-202ENST00000348495 CPSF1Q10570 1443 aaKnown RBP37.22■■■■□ 3.55
SSBP4-202ENST00000348495 TERF2IPQ9NYB0 399 aa37.22■■■■□ 3.55
SSBP4-202ENST00000348495 C1orf167Q5SNV9 1468 aa37.2■■■■□ 3.55
SSBP4-202ENST00000348495 AKAP12Q02952 1782 aa37.16■■■■□ 3.54
SSBP4-202ENST00000348495 POLR3AO14802 1390 aaPredicted RBP37.15■■■■□ 3.54
SSBP4-202ENST00000348495 HDGFL2Q7Z4V5 671 aaPredicted RBP37.15■■■■□ 3.54
SSBP4-202ENST00000348495 ACEP12821 1306 aa37.13■■■■□ 3.54
SSBP4-202ENST00000348495 NSD3Q9BZ95 1437 aa37.13■■■■□ 3.54
SSBP4-202ENST00000348495 KNSTRNQ9Y448 316 aa37.13■■■■□ 3.53
SSBP4-202ENST00000348495 MON2Q7Z3U7 1717 aa37.12■■■■□ 3.53
SSBP4-202ENST00000348495 PMFBP1Q8TBY8 1022 aa37.11■■■■□ 3.53
SSBP4-202ENST00000348495 PHF8Q9UPP1 1060 aa37.11■■■■□ 3.53
SSBP4-202ENST00000348495 ZNF692Q9BU19 519 aaPredicted RBP37.1■■■■□ 3.53
SSBP4-202ENST00000348495 ESCO1Q5FWF5 840 aa37.1■■■■□ 3.53
SSBP4-202ENST00000348495 KTN1Q86UP2 1357 aaKnown RBP37.09■■■■□ 3.53
SSBP4-202ENST00000348495 AMER1Q5JTC6 1135 aaPredicted RBP37.09■■■■□ 3.53
SSBP4-202ENST00000348495 ORAI2Q96SN7 254 aa37.09■■■■□ 3.53
SSBP4-202ENST00000348495 NPC1L1Q9UHC9 1359 aa37.07■■■■□ 3.52
SSBP4-202ENST00000348495 KIF1AQ12756 1690 aa37.06■■■■□ 3.52
SSBP4-202ENST00000348495 EDC4Q6P2E9 1401 aaKnown RBP37.05■■■■□ 3.52
SSBP4-202ENST00000348495 USP6P35125 1406 aa37.05■■■■□ 3.52
SSBP4-202ENST00000348495 NGDNQ8NEJ9 315 aaKnown RBP37.05■■■■□ 3.52
SSBP4-202ENST00000348495 SLAIN2Q9P270 581 aa37.04■■■■□ 3.52
SSBP4-202ENST00000348495 NRKQ7Z2Y5 1582 aa37.04■■■■□ 3.52
SSBP4-202ENST00000348495 SSH2Q76I76 1423 aa37.02■■■■□ 3.52
SSBP4-202ENST00000348495 ANP32CO43423 234 aa37.02■■■■□ 3.52
SSBP4-202ENST00000348495 CGNL1Q0VF96 1302 aa37■■■■□ 3.51
SSBP4-202ENST00000348495 PRKRIP1Q9H875 184 aaPredicted RBP36.99■■■■□ 3.51
SSBP4-202ENST00000348495 IQSEC2Q5JU85 1478 aa36.97■■■■□ 3.51
SSBP4-202ENST00000348495 MIER1Q8N108 512 aa36.96■■■■□ 3.51
SSBP4-202ENST00000348495 CC2D1BQ5T0F9 858 aaKnown RBP36.95■■■■□ 3.51
SSBP4-202ENST00000348495 NSD2O96028 1365 aa36.94■■■■□ 3.5
SSBP4-202ENST00000348495 BRINP3Q76B58 766 aa36.94■■■■□ 3.5
SSBP4-202ENST00000348495 PARD3Q8TEW0 1356 aa36.94■■■■□ 3.5
SSBP4-202ENST00000348495 BRD4O60885 1362 aaPredicted RBP36.93■■■■□ 3.5
SSBP4-202ENST00000348495 TTC21BQ7Z4L5 1316 aa36.93■■■■□ 3.5
SSBP4-202ENST00000348495 FOXO3O43524 673 aa36.93■■■■□ 3.5
SSBP4-202ENST00000348495 FYB1O15117 783 aa36.92■■■■□ 3.5
SSBP4-202ENST00000348495 KIF20BQ96Q89 1820 aa36.92■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms