RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 HDAC5Q9UQL6 1122 aa7.87□□□□□ -1.15
PRKDC-202ENST00000338368 CFAP43Q8NDM7 1665 aa7.87□□□□□ -1.15
PRKDC-202ENST00000338368 SHANK2Q9UPX8 1470 aa7.87□□□□□ -1.15
PRKDC-202ENST00000338368 DEKP35659 375 aaKnown RBP7.87□□□□□ -1.15
PRKDC-202ENST00000338368 TARBP1Q13395 1621 aaKnown RBP7.87□□□□□ -1.15
PRKDC-202ENST00000338368 KCNJ4P48050 445 aa7.87□□□□□ -1.15
PRKDC-202ENST00000338368 FCHSD2O94868 740 aa7.86□□□□□ -1.15
PRKDC-202ENST00000338368 MCCP23508 829 aa7.86□□□□□ -1.15
PRKDC-202ENST00000338368 UHRF1BP1Q6BDS2 1440 aa7.86□□□□□ -1.15
PRKDC-202ENST00000338368 AMER1Q5JTC6 1135 aaPredicted RBP7.86□□□□□ -1.15
PRKDC-202ENST00000338368 FAM135AQ9P2D6 1515 aa7.86□□□□□ -1.15
PRKDC-202ENST00000338368 A2MP01023 1474 aa7.86□□□□□ -1.15
PRKDC-202ENST00000338368 ABCC2Q92887 1545 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 KDM5BQ9UGL1 1544 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 SULT6B1Q6IMI4 303 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 TWISTNBQ3B726 338 aaPredicted RBP7.85□□□□□ -1.15
PRKDC-202ENST00000338368 C20orf194Q5TEA3 1177 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 LNPKQ9C0E8 428 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 EIF2S2P20042 333 aaKnown RBP7.85□□□□□ -1.15
PRKDC-202ENST00000338368 TRIM44Q96DX7 344 aaPredicted RBP7.85□□□□□ -1.15
PRKDC-202ENST00000338368 C1orf141Q5JVX7 400 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 TSPYL4Q9UJ04 414 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 ATF7IPQ6VMQ6 1270 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 MBD5Q9P267 1494 aa7.85□□□□□ -1.15
PRKDC-202ENST00000338368 ZNF518AQ6AHZ1 1483 aa7.84□□□□□ -1.15
PRKDC-202ENST00000338368 FKBP5Q13451 457 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-202ENST00000338368 NECTIN2Q92692 538 aa7.84□□□□□ -1.15
PRKDC-202ENST00000338368 RRS1Q15050 365 aaKnown RBP7.84□□□□□ -1.15
PRKDC-202ENST00000338368 DUSP27Q5VZP5 1158 aa7.84□□□□□ -1.15
PRKDC-202ENST00000338368 CEBPAP49715 358 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-202ENST00000338368 PARD3Q8TEW0 1356 aa7.84□□□□□ -1.15
PRKDC-202ENST00000338368 ZNF330Q9Y3S2 320 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-202ENST00000338368 TEX14Q8IWB6 1497 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 TMPOP42166 694 aaKnown RBP7.83□□□□□ -1.16
PRKDC-202ENST00000338368 ESCO1Q5FWF5 840 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 BACH2Q9BYV9 841 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 EMILIN1Q9Y6C2 1016 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 TRIM6-TRIM34B2RNG4 842 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 CT47B1P0C2W7 299 aaPredicted RBP7.83□□□□□ -1.16
PRKDC-202ENST00000338368 HMGB2P26583 209 aaKnown RBP7.83□□□□□ -1.16
PRKDC-202ENST00000338368 ABTB2Q8N961 1025 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 PDZRN3Q9UPQ7 1066 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 PROSER2Q86WR7 435 aaPredicted RBP7.83□□□□□ -1.16
PRKDC-202ENST00000338368 CARD14Q9BXL6 1004 aa7.83□□□□□ -1.16
PRKDC-202ENST00000338368 CTTNBP2Q8WZ74 1663 aa7.82□□□□□ -1.16
PRKDC-202ENST00000338368 WASLO00401 505 aaPredicted RBP7.82□□□□□ -1.16
PRKDC-202ENST00000338368 CEP170Q5SW79 1584 aa7.82□□□□□ -1.16
PRKDC-202ENST00000338368 RARSP54136 660 aaKnown RBP7.82□□□□□ -1.16
PRKDC-202ENST00000338368 KIF21AQ7Z4S6 1674 aa7.82□□□□□ -1.16
PRKDC-202ENST00000338368 ABCC10Q5T3U5 1492 aa7.82□□□□□ -1.16
PRKDC-202ENST00000338368 NOB1Q9ULX3 412 aaKnown RBP7.82□□□□□ -1.16
PRKDC-202ENST00000338368 NFE2L2Q16236 605 aa7.82□□□□□ -1.16
PRKDC-202ENST00000338368 TPRNQ4KMQ1 711 aa7.82□□□□□ -1.16
PRKDC-202ENST00000338368 NME9Q86XW9 330 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 USP35Q9P2H5 1018 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 FGD1P98174 961 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 DNMT1P26358 1616 aaKnown RBP7.81□□□□□ -1.16
PRKDC-202ENST00000338368 KIAA1211Q6ZU35 1233 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 RAPGEF4Q8WZA2 1011 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 GAS2L2Q8NHY3 880 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 ANKLE2Q86XL3 938 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 PUS7Q96PZ0 661 aaKnown RBP7.81□□□□□ -1.16
PRKDC-202ENST00000338368 GPRASP1Q5JY77 1395 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 FYB1O15117 783 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 ZNF428Q96B54 188 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 ARHGEF12Q9NZN5 1544 aa7.81□□□□□ -1.16
PRKDC-202ENST00000338368 POGZQ7Z3K3 1410 aa7.8□□□□□ -1.16
PRKDC-202ENST00000338368 AMOTL2Q9Y2J4 779 aa7.8□□□□□ -1.16
PRKDC-202ENST00000338368 MVPQ14764 893 aaKnown RBP7.8□□□□□ -1.16
PRKDC-202ENST00000338368 GZF1Q9H116 711 aaPredicted RBP7.8□□□□□ -1.16
PRKDC-202ENST00000338368 FOXD4L1Q9NU39 408 aa7.8□□□□□ -1.16
PRKDC-202ENST00000338368 RILPL2Q969X0 211 aa7.8□□□□□ -1.16
PRKDC-202ENST00000338368 GBP4Q96PP9 640 aa7.8□□□□□ -1.16
PRKDC-202ENST00000338368 ATF3P18847 181 aa7.8□□□□□ -1.16
PRKDC-202ENST00000338368 THUMPD2Q9BTF0 503 aaKnown RBP7.79□□□□□ -1.16
PRKDC-202ENST00000338368 NINLQ9Y2I6 1382 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 NSD2O96028 1365 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 SLC4A2P04920 1241 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 CCDC30Q5VVM6 783 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 SPATA31E1Q6ZUB1 1445 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 SKAP1Q86WV1 359 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 NLRP2Q9NX02 1062 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 TTC5Q8N0Z6 440 aa7.79□□□□□ -1.16
PRKDC-202ENST00000338368 NEXNQ0ZGT2 675 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 C9orf78Q9NZ63 289 aaPredicted RBP7.78□□□□□ -1.16
PRKDC-202ENST00000338368 CHMP3Q9Y3E7 222 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 GNAI3P08754 354 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 FBLN1P23142 703 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 SSH1Q8WYL5 1049 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 GCC1Q96CN9 775 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 ANKRD36BQ8N2N9 1353 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 DDX58O95786 925 aaKnown RBP7.78□□□□□ -1.16
PRKDC-202ENST00000338368 C1orf115Q9H7X2 142 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 DCTN1Q14203 1278 aa7.78□□□□□ -1.16
PRKDC-202ENST00000338368 RTN4Q9NQC3 1192 aaKnown RBP7.78□□□□□ -1.16
PRKDC-202ENST00000338368 NAP1L2Q9ULW6 460 aaPredicted RBP7.77□□□□□ -1.16
PRKDC-202ENST00000338368 C22orf23Q9BZE7 217 aa7.77□□□□□ -1.17
PRKDC-202ENST00000338368 GORABQ5T7V8 394 aa7.77□□□□□ -1.17
PRKDC-202ENST00000338368 CCDC9Q9Y3X0 531 aaKnown RBP7.77□□□□□ -1.17
PRKDC-202ENST00000338368 NOL8Q76FK4 1167 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms