RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 WAPLQ7Z5K2 1190 aa29.18■■■□□ 2.26
PDZRN3-202ENST00000308537 PHF23Q9BUL5 403 aaPredicted RBP29.17■■■□□ 2.26
PDZRN3-202ENST00000308537 STK26Q9P289 416 aa29.17■■■□□ 2.26
PDZRN3-202ENST00000308537 DDX17Q92841 729 aaKnown RBP29.15■■■□□ 2.26
PDZRN3-202ENST00000308537 ORAI2Q96SN7 254 aa29.13■■■□□ 2.25
PDZRN3-202ENST00000308537 SIRT1Q96EB6 747 aa29.12■■■□□ 2.25
PDZRN3-202ENST00000308537 SPATA31A6Q5VVP1 1343 aa29.11■■■□□ 2.25
PDZRN3-202ENST00000308537 FMN2Q9NZ56 1722 aa29.11■■■□□ 2.25
PDZRN3-202ENST00000308537 DLC1Q96QB1 1528 aa29.1■■■□□ 2.25
PDZRN3-202ENST00000308537 DCAF11Q8TEB1 546 aa29.07■■■□□ 2.24
PDZRN3-202ENST00000308537 SOS2Q07890 1332 aaPredicted RBP29.06■■■□□ 2.24
PDZRN3-202ENST00000308537 PNPLA6Q8IY17 1366 aa29.05■■■□□ 2.24
PDZRN3-202ENST00000308537 POTEAQ6S8J7 498 aa29.05■■■□□ 2.24
PDZRN3-202ENST00000308537 STAC3Q96MF2 364 aa29.03■■■□□ 2.24
PDZRN3-202ENST00000308537 KDM2AQ9Y2K7 1162 aa29.03■■■□□ 2.24
PDZRN3-202ENST00000308537 LRRC59Q96AG4 307 aaKnown RBP29.02■■■□□ 2.24
PDZRN3-202ENST00000308537 RGPD8O14715 1765 aaPredicted RBP29.01■■■□□ 2.23
PDZRN3-202ENST00000308537 PXDNQ92626 1479 aa29■■■□□ 2.23
PDZRN3-202ENST00000308537 ADGRB2O60241 1585 aa29■■■□□ 2.23
PDZRN3-202ENST00000308537 PRAM1Q96QH2 718 aa28.98■■■□□ 2.23
PDZRN3-202ENST00000308537 USP32Q8NFA0 1604 aa28.96■■■□□ 2.23
PDZRN3-202ENST00000308537 COL22A1Q8NFW1 1626 aaPredicted RBP28.96■■■□□ 2.23
PDZRN3-202ENST00000308537 ESCO1Q5FWF5 840 aa28.96■■■□□ 2.23
PDZRN3-202ENST00000308537 ARHGEF28Q8N1W1 1705 aaKnown RBP28.95■■■□□ 2.23
PDZRN3-202ENST00000308537 KIAA1210Q9ULL0 1709 aa28.95■■■□□ 2.23
PDZRN3-202ENST00000308537 NUTM2FA1L443 756 aa28.95■■■□□ 2.22
PDZRN3-202ENST00000308537 KIF1AQ12756 1690 aa28.93■■■□□ 2.22
PDZRN3-202ENST00000308537 SAFB2Q14151 953 aaKnown RBP eCLIP28.91■■■□□ 2.22
PDZRN3-202ENST00000308537 TRAK1Q9UPV9 953 aa28.91■■■□□ 2.22
PDZRN3-202ENST00000308537 NPHP3Q7Z494 1330 aa28.91■■■□□ 2.22
PDZRN3-202ENST00000308537 NUTM2BA6NNL0 878 aaPredicted RBP28.9■■■□□ 2.22
PDZRN3-202ENST00000308537 NUTM2EB1AL46 878 aaPredicted RBP28.9■■■□□ 2.22
PDZRN3-202ENST00000308537 FOXO3O43524 673 aa28.9■■■□□ 2.22
PDZRN3-202ENST00000308537 NUTM2AQ8IVF1 878 aaPredicted RBP28.9■■■□□ 2.22
PDZRN3-202ENST00000308537 XPCQ01831 940 aaPredicted RBP28.85■■■□□ 2.21
PDZRN3-202ENST00000308537 MEX3CQ5U5Q3 659 aaKnown RBP28.85■■■□□ 2.21
PDZRN3-202ENST00000308537 POGKQ9P215 609 aa28.85■■■□□ 2.21
PDZRN3-202ENST00000308537 ANKARQ7Z5J8 1434 aa28.85■■■□□ 2.21
PDZRN3-202ENST00000308537 SIN3AQ96ST3 1273 aa28.83■■■□□ 2.21
PDZRN3-202ENST00000308537 PRR36Q9H6K5 1346 aa28.81■■■□□ 2.2
PDZRN3-202ENST00000308537 NBPF1Q3BBV0 1214 aa28.81■■■□□ 2.2
PDZRN3-202ENST00000308537 TULP4Q9NRJ4 1543 aa28.8■■■□□ 2.2
PDZRN3-202ENST00000308537 AFF2P51816 1311 aa28.8■■■□□ 2.2
PDZRN3-202ENST00000308537 MINK1Q8N4C8 1332 aaPredicted RBP28.8■■■□□ 2.2
PDZRN3-202ENST00000308537 ZNF772Q68DY9 489 aaPredicted RBP28.8■■■□□ 2.2
PDZRN3-202ENST00000308537 HIRIP3Q9BW71 556 aaPredicted RBP28.8■■■□□ 2.2
PDZRN3-202ENST00000308537 PHF8Q9UPP1 1060 aa28.8■■■□□ 2.2
PDZRN3-202ENST00000308537 L3MBTL2Q969R5 705 aa28.79■■■□□ 2.2
PDZRN3-202ENST00000308537 SPATA31A3Q5VYP0 1347 aa28.78■■■□□ 2.2
PDZRN3-202ENST00000308537 MARF1Q9Y4F3 1742 aaKnown RBP28.77■■■□□ 2.2
PDZRN3-202ENST00000308537 WASLO00401 505 aaPredicted RBP28.75■■■□□ 2.19
PDZRN3-202ENST00000308537 C8orf37Q96NL8 207 aa28.75■■■□□ 2.19
PDZRN3-202ENST00000308537 TRPM3Q9HCF6 1732 aaPredicted RBP28.74■■■□□ 2.19
PDZRN3-202ENST00000308537 ATP7BP35670 1465 aa28.74■■■□□ 2.19
PDZRN3-202ENST00000308537 ADAMTS2O95450 1211 aa28.74■■■□□ 2.19
PDZRN3-202ENST00000308537 KRT28Q7Z3Y7 464 aa28.74■■■□□ 2.19
PDZRN3-202ENST00000308537 TRPM1Q7Z4N2 1603 aa28.73■■■□□ 2.19
PDZRN3-202ENST00000308537 TNS3Q68CZ2 1445 aa28.72■■■□□ 2.19
PDZRN3-202ENST00000308537 ABCA3Q99758 1704 aa28.7■■■□□ 2.19
PDZRN3-202ENST00000308537 SBNO1A3KN83 1393 aa28.7■■■□□ 2.18
PDZRN3-202ENST00000308537 FNBP4Q8N3X1 1017 aaPredicted RBP28.69■■■□□ 2.18
PDZRN3-202ENST00000308537 PMFBP1Q8TBY8 1022 aa28.69■■■□□ 2.18
PDZRN3-202ENST00000308537 EIF3AQ14152 1382 aaKnown RBP28.69■■■□□ 2.18
PDZRN3-202ENST00000308537 CDK12Q9NYV4 1490 aaPredicted RBP28.69■■■□□ 2.18
PDZRN3-202ENST00000308537 TOPAZ1Q8N9V7 1692 aa28.69■■■□□ 2.18
PDZRN3-202ENST00000308537 ALS2Q96Q42 1657 aa28.68■■■□□ 2.18
PDZRN3-202ENST00000308537 ITSN1Q15811 1721 aa28.67■■■□□ 2.18
PDZRN3-202ENST00000308537 TRIM26Q12899 539 aaPredicted RBP28.67■■■□□ 2.18
PDZRN3-202ENST00000308537 NEUROD1Q13562 356 aa28.65■■■□□ 2.18
PDZRN3-202ENST00000308537 NGLY1Q96IV0 654 aa28.65■■■□□ 2.18
PDZRN3-202ENST00000308537 BCL9LQ86UU0 1499 aa28.65■■■□□ 2.18
PDZRN3-202ENST00000308537 RXRBP28702 533 aa28.64■■■□□ 2.18
PDZRN3-202ENST00000308537 QRICH2Q9H0J4 1663 aa28.62■■■□□ 2.17
PDZRN3-202ENST00000308537 PSME1Q06323 249 aa28.62■■■□□ 2.17
PDZRN3-202ENST00000308537 QTRT2Q9H974 415 aaKnown RBP28.62■■■□□ 2.17
PDZRN3-202ENST00000308537 CRYBG1Q9Y4K1 1723 aa28.61■■■□□ 2.17
PDZRN3-202ENST00000308537 NUDT16Q96DE0 195 aaKnown RBP28.61■■■□□ 2.17
PDZRN3-202ENST00000308537 CDK19Q9BWU1 502 aa28.61■■■□□ 2.17
PDZRN3-202ENST00000308537 RGS12O14924 1447 aa28.6■■■□□ 2.17
PDZRN3-202ENST00000308537 ATRNO75882 1429 aa28.6■■■□□ 2.17
PDZRN3-202ENST00000308537 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.6■■■□□ 2.17
PDZRN3-202ENST00000308537 SLIT2O94813 1529 aa28.6■■■□□ 2.17
PDZRN3-202ENST00000308537 NBPF8Q3BBV2 869 aa28.59■■■□□ 2.17
PDZRN3-202ENST00000308537 USP21Q9UK80 565 aa28.59■■■□□ 2.17
PDZRN3-202ENST00000308537 RBM6P78332 1123 aaKnown RBP28.58■■■□□ 2.17
PDZRN3-202ENST00000308537 ARHGEF10O15013 1369 aa28.58■■■□□ 2.17
PDZRN3-202ENST00000308537 CABLES1Q8TDN4 633 aa28.57■■■□□ 2.16
PDZRN3-202ENST00000308537 CENPJQ9HC77 1338 aaPredicted RBP28.57■■■□□ 2.16
PDZRN3-202ENST00000308537 GPRASP1Q5JY77 1395 aa28.56■■■□□ 2.16
PDZRN3-202ENST00000308537 POLR3AO14802 1390 aaPredicted RBP28.55■■■□□ 2.16
PDZRN3-202ENST00000308537 PLCH1Q4KWH8 1693 aa28.52■■■□□ 2.16
PDZRN3-202ENST00000308537 TRPC5Q9UL62 973 aaPredicted RBP28.52■■■□□ 2.16
PDZRN3-202ENST00000308537 CCDC61Q9Y6R9 512 aa28.51■■■□□ 2.15
PDZRN3-202ENST00000308537 ROCK2O75116 1388 aaKnown RBP28.5■■■□□ 2.15
PDZRN3-202ENST00000308537 PLEKHG3A1L390 1219 aa28.5■■■□□ 2.15
PDZRN3-202ENST00000308537 NGDNQ8NEJ9 315 aaKnown RBP28.5■■■□□ 2.15
PDZRN3-202ENST00000308537 NWD2Q9ULI1 1742 aa28.49■■■□□ 2.15
PDZRN3-202ENST00000308537 GLI3P10071 1580 aa28.49■■■□□ 2.15
PDZRN3-202ENST00000308537 LMOD2Q6P5Q4 547 aa28.47■■■□□ 2.15
PDZRN3-202ENST00000308537 ACEP12821 1306 aa28.46■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms