RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 KDM2AQ9Y2K7 1162 aa38.54■■■■□ 3.76
CDKN2A-201ENST00000304494 SPATA31A6Q5VVP1 1343 aa38.5■■■■□ 3.75
CDKN2A-201ENST00000304494 PLEKHH1Q9ULM0 1364 aa38.49■■■■□ 3.75
CDKN2A-201ENST00000304494 SHPRHQ149N8 1683 aa38.48■■■■□ 3.75
CDKN2A-201ENST00000304494 ORAI2Q96SN7 254 aa38.45■■■■□ 3.75
CDKN2A-201ENST00000304494 LRRC59Q96AG4 307 aaKnown RBP38.44■■■■□ 3.74
CDKN2A-201ENST00000304494 ADGRB1O14514 1584 aa38.44■■■■□ 3.74
CDKN2A-201ENST00000304494 SOCS7O14512 581 aa38.43■■■■□ 3.74
CDKN2A-201ENST00000304494 DLC1Q96QB1 1528 aa38.42■■■■□ 3.74
CDKN2A-201ENST00000304494 DDX17Q92841 729 aaKnown RBP38.41■■■■□ 3.74
CDKN2A-201ENST00000304494 PRAM1Q96QH2 718 aa38.39■■■■□ 3.74
CDKN2A-201ENST00000304494 ESCO1Q5FWF5 840 aa38.38■■■■□ 3.73
CDKN2A-201ENST00000304494 RGS17Q9UGC6 210 aaPredicted RBP38.38■■■■□ 3.73
CDKN2A-201ENST00000304494 POGKQ9P215 609 aa38.35■■■■□ 3.73
CDKN2A-201ENST00000304494 LRP6O75581 1613 aa38.34■■■■□ 3.73
CDKN2A-201ENST00000304494 FMN2Q9NZ56 1722 aa38.33■■■■□ 3.73
CDKN2A-201ENST00000304494 MEX3CQ5U5Q3 659 aaKnown RBP38.33■■■■□ 3.73
CDKN2A-201ENST00000304494 TRAK1Q9UPV9 953 aa38.33■■■■□ 3.73
CDKN2A-201ENST00000304494 SOS2Q07890 1332 aaPredicted RBP38.33■■■■□ 3.73
CDKN2A-201ENST00000304494 NUTM2FA1L443 756 aa38.31■■■■□ 3.72
CDKN2A-201ENST00000304494 SAFB2Q14151 953 aaKnown RBP eCLIP38.31■■■■□ 3.72
CDKN2A-201ENST00000304494 NPHP3Q7Z494 1330 aa38.3■■■■□ 3.72
CDKN2A-201ENST00000304494 PNPLA6Q8IY17 1366 aa38.29■■■■□ 3.72
CDKN2A-201ENST00000304494 NUTM2BA6NNL0 878 aaPredicted RBP38.26■■■■□ 3.72
CDKN2A-201ENST00000304494 NUTM2EB1AL46 878 aaPredicted RBP38.26■■■■□ 3.72
CDKN2A-201ENST00000304494 TRIM26Q12899 539 aaPredicted RBP38.26■■■■□ 3.72
CDKN2A-201ENST00000304494 NUTM2AQ8IVF1 878 aaPredicted RBP38.26■■■■□ 3.72
CDKN2A-201ENST00000304494 KIAA1210Q9ULL0 1709 aa38.23■■■■□ 3.71
CDKN2A-201ENST00000304494 ADGRB2O60241 1585 aa38.23■■■■□ 3.71
CDKN2A-201ENST00000304494 FOXO3O43524 673 aa38.22■■■■□ 3.71
CDKN2A-201ENST00000304494 KIF1AQ12756 1690 aa38.21■■■■□ 3.71
CDKN2A-201ENST00000304494 POTEAQ6S8J7 498 aa38.2■■■■□ 3.71
CDKN2A-201ENST00000304494 PXDNQ92626 1479 aa38.19■■■■□ 3.7
CDKN2A-201ENST00000304494 SIN3AQ96ST3 1273 aa38.17■■■■□ 3.7
CDKN2A-201ENST00000304494 ANKARQ7Z5J8 1434 aa38.15■■■■□ 3.7
CDKN2A-201ENST00000304494 ZNF772Q68DY9 489 aaPredicted RBP38.15■■■■□ 3.7
CDKN2A-201ENST00000304494 EIF3AQ14152 1382 aaKnown RBP38.15■■■■□ 3.7
CDKN2A-201ENST00000304494 MINK1Q8N4C8 1332 aaPredicted RBP38.14■■■■□ 3.7
CDKN2A-201ENST00000304494 L3MBTL2Q969R5 705 aa38.14■■■■□ 3.7
CDKN2A-201ENST00000304494 ARHGEF28Q8N1W1 1705 aaKnown RBP38.14■■■■□ 3.7
CDKN2A-201ENST00000304494 HIRIP3Q9BW71 556 aaPredicted RBP38.13■■■■□ 3.69
CDKN2A-201ENST00000304494 PHF8Q9UPP1 1060 aa38.13■■■■□ 3.69
CDKN2A-201ENST00000304494 XPCQ01831 940 aaPredicted RBP38.12■■■■□ 3.69
CDKN2A-201ENST00000304494 NEUROD1Q13562 356 aa38.12■■■■□ 3.69
CDKN2A-201ENST00000304494 COL22A1Q8NFW1 1626 aaPredicted RBP38.1■■■■□ 3.69
CDKN2A-201ENST00000304494 RGPD8O14715 1765 aaPredicted RBP38.1■■■■□ 3.69
CDKN2A-201ENST00000304494 WASLO00401 505 aaPredicted RBP38.07■■■■□ 3.68
CDKN2A-201ENST00000304494 NBPF1Q3BBV0 1214 aa38.07■■■■□ 3.68
CDKN2A-201ENST00000304494 USP32Q8NFA0 1604 aa38.05■■■■□ 3.68
CDKN2A-201ENST00000304494 KRT28Q7Z3Y7 464 aa38.05■■■■□ 3.68
CDKN2A-201ENST00000304494 TULP4Q9NRJ4 1543 aa38.05■■■■□ 3.68
CDKN2A-201ENST00000304494 C8orf37Q96NL8 207 aa38.04■■■■□ 3.68
CDKN2A-201ENST00000304494 PSME1Q06323 249 aa38.03■■■■□ 3.68
CDKN2A-201ENST00000304494 AFF2P51816 1311 aa38.03■■■■□ 3.68
CDKN2A-201ENST00000304494 ADAMTS2O95450 1211 aa38.02■■■■□ 3.68
CDKN2A-201ENST00000304494 SPATA31A3Q5VYP0 1347 aa38.01■■■■□ 3.68
CDKN2A-201ENST00000304494 PMFBP1Q8TBY8 1022 aa37.98■■■■□ 3.67
CDKN2A-201ENST00000304494 PRR36Q9H6K5 1346 aa37.97■■■■□ 3.67
CDKN2A-201ENST00000304494 NGLY1Q96IV0 654 aa37.97■■■■□ 3.67
CDKN2A-201ENST00000304494 SBNO1A3KN83 1393 aa37.95■■■■□ 3.67
CDKN2A-201ENST00000304494 TNS3Q68CZ2 1445 aa37.95■■■■□ 3.67
CDKN2A-201ENST00000304494 TRPM1Q7Z4N2 1603 aa37.92■■■■□ 3.66
CDKN2A-201ENST00000304494 CENPJQ9HC77 1338 aaPredicted RBP37.9■■■■□ 3.66
CDKN2A-201ENST00000304494 RXRBP28702 533 aa37.9■■■■□ 3.66
CDKN2A-201ENST00000304494 CDK19Q9BWU1 502 aa37.9■■■■□ 3.66
CDKN2A-201ENST00000304494 GPRASP1Q5JY77 1395 aa37.9■■■■□ 3.66
CDKN2A-201ENST00000304494 ATP7BP35670 1465 aa37.89■■■■□ 3.66
CDKN2A-201ENST00000304494 NUDT16Q96DE0 195 aaKnown RBP37.88■■■■□ 3.65
CDKN2A-201ENST00000304494 ARHGEF10O15013 1369 aa37.88■■■■□ 3.65
CDKN2A-201ENST00000304494 ITSN1Q15811 1721 aa37.87■■■■□ 3.65
CDKN2A-201ENST00000304494 ROCK2O75116 1388 aaKnown RBP37.87■■■■□ 3.65
CDKN2A-201ENST00000304494 TONSLQ96HA7 1378 aa37.85■■■■□ 3.65
CDKN2A-201ENST00000304494 NGDNQ8NEJ9 315 aaKnown RBP37.85■■■■□ 3.65
CDKN2A-201ENST00000304494 FNBP4Q8N3X1 1017 aaPredicted RBP37.84■■■■□ 3.65
CDKN2A-201ENST00000304494 QTRT2Q9H974 415 aaKnown RBP37.84■■■■□ 3.65
CDKN2A-201ENST00000304494 LMOD2Q6P5Q4 547 aa37.83■■■■□ 3.65
CDKN2A-201ENST00000304494 USP21Q9UK80 565 aa37.83■■■■□ 3.65
CDKN2A-201ENST00000304494 MARF1Q9Y4F3 1742 aaKnown RBP37.82■■■■□ 3.65
CDKN2A-201ENST00000304494 QRICH2Q9H0J4 1663 aa37.8■■■■□ 3.64
CDKN2A-201ENST00000304494 CDK12Q9NYV4 1490 aaPredicted RBP37.8■■■■□ 3.64
CDKN2A-201ENST00000304494 HAP1P54257 671 aaPredicted RBP37.8■■■■□ 3.64
CDKN2A-201ENST00000304494 TRPM3Q9HCF6 1732 aaPredicted RBP37.79■■■■□ 3.64
CDKN2A-201ENST00000304494 CCDC61Q9Y6R9 512 aa37.79■■■■□ 3.64
CDKN2A-201ENST00000304494 RBM6P78332 1123 aaKnown RBP37.78■■■■□ 3.64
CDKN2A-201ENST00000304494 SRPK2P78362 688 aaKnown RBP37.76■■■■□ 3.64
CDKN2A-201ENST00000304494 NBPF8Q3BBV2 869 aa37.76■■■■□ 3.64
CDKN2A-201ENST00000304494 TRPC5Q9UL62 973 aaPredicted RBP37.76■■■■□ 3.64
CDKN2A-201ENST00000304494 TOPAZ1Q8N9V7 1692 aa37.76■■■■□ 3.63
CDKN2A-201ENST00000304494 CABLES1Q8TDN4 633 aa37.73■■■■□ 3.63
CDKN2A-201ENST00000304494 ALS2Q96Q42 1657 aa37.72■■■■□ 3.63
CDKN2A-201ENST00000304494 POLR3AO14802 1390 aaPredicted RBP37.71■■■■□ 3.63
CDKN2A-201ENST00000304494 PLEKHG3A1L390 1219 aa37.71■■■■□ 3.63
CDKN2A-201ENST00000304494 PAK3O75914 559 aaPredicted RBP37.71■■■■□ 3.63
CDKN2A-201ENST00000304494 BCL9LQ86UU0 1499 aa37.7■■■■□ 3.63
CDKN2A-201ENST00000304494 PLEKHG5O94827 1062 aa37.69■■■■□ 3.62
CDKN2A-201ENST00000304494 ABCA3Q99758 1704 aa37.69■■■■□ 3.62
CDKN2A-201ENST00000304494 ATRNO75882 1429 aa37.69■■■■□ 3.62
CDKN2A-201ENST00000304494 ACEP12821 1306 aa37.68■■■■□ 3.62
CDKN2A-201ENST00000304494 CABP2Q9NPB3 220 aa37.68■■■■□ 3.62
CDKN2A-201ENST00000304494 EVC2Q86UK5 1308 aa37.67■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms