RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 IQSEC2Q5JU85 1478 aa13.46□□□□□ -0.25
SKA1-201ENST00000285116 AAMPQ13685 434 aa13.45□□□□□ -0.26
SKA1-201ENST00000285116 ADGRL1O94910 1474 aa13.44□□□□□ -0.26
SKA1-201ENST00000285116 ADGRB1O14514 1584 aa13.44□□□□□ -0.26
SKA1-201ENST00000285116 C8orf34Q49A92 452 aa13.44□□□□□ -0.26
SKA1-201ENST00000285116 PDE3AQ14432 1141 aa13.43□□□□□ -0.26
SKA1-201ENST00000285116 RSPH6AQ9H0K4 717 aa13.43□□□□□ -0.26
SKA1-201ENST00000285116 EIF5BO60841 1220 aaKnown RBP13.43□□□□□ -0.26
SKA1-201ENST00000285116 FAM43AQ8N2R8 423 aa13.43□□□□□ -0.26
SKA1-201ENST00000285116 UGGT1Q9NYU2 1555 aa13.43□□□□□ -0.26
SKA1-201ENST00000285116 KIF3BO15066 747 aa13.43□□□□□ -0.26
SKA1-201ENST00000285116 CHGAP10645 457 aaKnown RBP13.43□□□□□ -0.26
SKA1-201ENST00000285116 HECW2Q9P2P5 1572 aa13.42□□□□□ -0.26
SKA1-201ENST00000285116 PUS7Q96PZ0 661 aaKnown RBP13.42□□□□□ -0.26
SKA1-201ENST00000285116 CGNL1Q0VF96 1302 aa13.41□□□□□ -0.26
SKA1-201ENST00000285116 PIK3C2BO00750 1634 aa13.41□□□□□ -0.26
SKA1-201ENST00000285116 ZNF518AQ6AHZ1 1483 aa13.41□□□□□ -0.26
SKA1-201ENST00000285116 ADGRB2O60241 1585 aa13.4□□□□□ -0.26
SKA1-201ENST00000285116 SLC4A3P48751 1232 aa13.4□□□□□ -0.26
SKA1-201ENST00000285116 CARD14Q9BXL6 1004 aa13.39□□□□□ -0.27
SKA1-201ENST00000285116 ARHGEF28Q8N1W1 1705 aaKnown RBP13.38□□□□□ -0.27
SKA1-201ENST00000285116 SKAP1Q86WV1 359 aa13.38□□□□□ -0.27
SKA1-201ENST00000285116 FRMPD1Q5SYB0 1578 aa13.38□□□□□ -0.27
SKA1-201ENST00000285116 ADGRF5Q8IZF2 1346 aa13.38□□□□□ -0.27
SKA1-201ENST00000285116 NSD2O96028 1365 aa13.37□□□□□ -0.27
SKA1-201ENST00000285116 APAF1O14727 1248 aa13.37□□□□□ -0.27
SKA1-201ENST00000285116 MLH3Q9UHC1 1453 aa13.37□□□□□ -0.27
SKA1-201ENST00000285116 RPGRIP1LQ68CZ1 1315 aa13.37□□□□□ -0.27
SKA1-201ENST00000285116 MAPK8IP3Q9UPT6 1336 aa13.37□□□□□ -0.27
SKA1-201ENST00000285116 CAMSAP1Q5T5Y3 1602 aa13.37□□□□□ -0.27
SKA1-201ENST00000285116 CCDC27Q2M243 656 aa13.36□□□□□ -0.27
SKA1-201ENST00000285116 SPINK5Q9NQ38 1064 aaPredicted RBP13.36□□□□□ -0.27
SKA1-201ENST00000285116 ANKRD26Q9UPS8 1709 aa13.36□□□□□ -0.27
SKA1-201ENST00000285116 FRAT2O75474 233 aaPredicted RBP13.36□□□□□ -0.27
SKA1-201ENST00000285116 CFAP70Q5T0N1 1121 aa13.36□□□□□ -0.27
SKA1-201ENST00000285116 GLI2P10070 1586 aa13.35□□□□□ -0.27
SKA1-201ENST00000285116 CENPJQ9HC77 1338 aaPredicted RBP13.35□□□□□ -0.27
SKA1-201ENST00000285116 TSPOAP1O95153 1857 aa13.35□□□□□ -0.27
SKA1-201ENST00000285116 NOS1P29475 1434 aa13.35□□□□□ -0.27
SKA1-201ENST00000285116 RIMBP3CA6NJZ7 1639 aa13.35□□□□□ -0.27
SKA1-201ENST00000285116 RIMBP3BA6NNM3 1639 aa13.35□□□□□ -0.27
SKA1-201ENST00000285116 RIMBP3Q9UFD9 1639 aa13.35□□□□□ -0.27
SKA1-201ENST00000285116 WDR63Q8IWG1 891 aa13.34□□□□□ -0.27
SKA1-201ENST00000285116 WWC1Q8IX03 1113 aa13.34□□□□□ -0.27
SKA1-201ENST00000285116 CD109Q6YHK3 1445 aa13.34□□□□□ -0.27
SKA1-201ENST00000285116 NSD3Q9BZ95 1437 aa13.34□□□□□ -0.27
SKA1-201ENST00000285116 NLRP1Q9C000 1473 aa13.34□□□□□ -0.27
SKA1-201ENST00000285116 C14orf93Q9H972 538 aaKnown RBP13.34□□□□□ -0.27
SKA1-201ENST00000285116 ABCC3O15438 1527 aa13.33□□□□□ -0.27
SKA1-201ENST00000285116 CCDC146Q8IYE0 955 aa13.33□□□□□ -0.27
SKA1-201ENST00000285116 NPATQ14207 1427 aa13.33□□□□□ -0.28
SKA1-201ENST00000285116 POGZQ7Z3K3 1410 aa13.33□□□□□ -0.28
SKA1-201ENST00000285116 RUNDC1Q96C34 613 aa13.33□□□□□ -0.28
SKA1-201ENST00000285116 CLTCQ00610 1675 aaKnown RBP13.33□□□□□ -0.28
SKA1-201ENST00000285116 CLUAP1Q96AJ1 413 aa13.32□□□□□ -0.28
SKA1-201ENST00000285116 BCAR3O75815 825 aa13.32□□□□□ -0.28
SKA1-201ENST00000285116 NEXMIFQ5QGS0 1516 aa13.32□□□□□ -0.28
SKA1-201ENST00000285116 TULP4Q9NRJ4 1543 aa13.31□□□□□ -0.28
SKA1-201ENST00000285116 SIGLEC1Q9BZZ2 1709 aa13.31□□□□□ -0.28
SKA1-201ENST00000285116 ZFYVE9O95405 1425 aa13.31□□□□□ -0.28
SKA1-201ENST00000285116 USP19O94966 1318 aa13.3□□□□□ -0.28
SKA1-201ENST00000285116 DMRT2Q9Y5R5 561 aa13.3□□□□□ -0.28
SKA1-201ENST00000285116 MED14O60244 1454 aa13.3□□□□□ -0.28
SKA1-201ENST00000285116 CT47B1P0C2W7 299 aaPredicted RBP13.29□□□□□ -0.28
SKA1-201ENST00000285116 ANKRD36BQ8N2N9 1353 aa13.29□□□□□ -0.28
SKA1-201ENST00000285116 ARHGAP31Q2M1Z3 1444 aa13.29□□□□□ -0.28
SKA1-201ENST00000285116 IGHDP01880 384 aa13.29□□□□□ -0.28
SKA1-201ENST00000285116 PMFBP1Q8TBY8 1022 aa13.29□□□□□ -0.28
SKA1-201ENST00000285116 CEBPAP49715 358 aaPredicted RBP13.29□□□□□ -0.28
SKA1-201ENST00000285116 RARSP54136 660 aaKnown RBP13.28□□□□□ -0.28
SKA1-201ENST00000285116 MORC1Q86VD1 984 aa13.27□□□□□ -0.29
SKA1-201ENST00000285116 CFAP65Q6ZU64 1925 aaKnown RBP13.27□□□□□ -0.29
SKA1-201ENST00000285116 L1TD1Q5T7N2 865 aaKnown RBP13.26□□□□□ -0.29
SKA1-201ENST00000285116 FBXO31Q5XUX0 539 aaPredicted RBP13.26□□□□□ -0.29
SKA1-201ENST00000285116 COL3A1P02461 1466 aaPredicted RBP13.26□□□□□ -0.29
SKA1-201ENST00000285116 CDC42BPGQ6DT37 1551 aa13.26□□□□□ -0.29
SKA1-201ENST00000285116 DNAJC5Q9H3Z4 198 aa13.26□□□□□ -0.29
SKA1-201ENST00000285116 CFAP53Q96M91 514 aa13.25□□□□□ -0.29
SKA1-201ENST00000285116 NEO1Q92859 1461 aa13.24□□□□□ -0.29
SKA1-201ENST00000285116 ADRA2BP18089 450 aa13.24□□□□□ -0.29
SKA1-201ENST00000285116 RGS3P49796 1198 aa13.24□□□□□ -0.29
SKA1-201ENST00000285116 TCP11L2Q8N4U5 519 aa13.24□□□□□ -0.29
SKA1-201ENST00000285116 ABCC11Q96J66 1382 aa13.24□□□□□ -0.29
SKA1-201ENST00000285116 MYH16Q9H6N6 1097 aa13.23□□□□□ -0.29
SKA1-201ENST00000285116 BECN1Q14457 450 aa13.23□□□□□ -0.29
SKA1-201ENST00000285116 POGKQ9P215 609 aa13.23□□□□□ -0.29
SKA1-201ENST00000285116 DIP2CQ9Y2E4 1556 aa13.23□□□□□ -0.29
SKA1-201ENST00000285116 EVC2Q86UK5 1308 aa13.23□□□□□ -0.29
SKA1-201ENST00000285116 GLIPR1L2Q4G1C9 344 aa13.23□□□□□ -0.29
SKA1-201ENST00000285116 KIF20BQ96Q89 1820 aa13.22□□□□□ -0.29
SKA1-201ENST00000285116 PANK1Q8TE04 598 aa13.22□□□□□ -0.29
SKA1-201ENST00000285116 RRAGDQ9NQL2 400 aaPredicted RBP13.22□□□□□ -0.29
SKA1-201ENST00000285116 YEATS2Q9ULM3 1422 aa13.21□□□□□ -0.29
SKA1-201ENST00000285116 IL16Q14005 1332 aa13.21□□□□□ -0.29
SKA1-201ENST00000285116 COG6Q9Y2V7 657 aa13.21□□□□□ -0.29
SKA1-201ENST00000285116 RICTORQ6R327 1708 aa13.21□□□□□ -0.29
SKA1-201ENST00000285116 SAFB2Q14151 953 aaKnown RBP eCLIP13.21□□□□□ -0.3
SKA1-201ENST00000285116 SLC12A5Q9H2X9 1139 aa13.21□□□□□ -0.3
SKA1-201ENST00000285116 CANXP27824 592 aaKnown RBP13.2□□□□□ -0.3
SKA1-201ENST00000285116 TMEM131LA2VDJ0 1609 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms